Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02090 832 / 0 MPPBETA Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) AT1G51980 181 / 9e-51 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) AT3G16480 178 / 1e-49 MPPALPHA mitochondrial processing peptidase alpha subunit (.1) AT2G41790 61 / 1e-09 Insulinase (Peptidase family M16) family protein (.1) AT1G06900 58 / 2e-08 Insulinase (Peptidase family M16) family protein (.1) AT3G57470 54 / 2e-07 Insulinase (Peptidase family M16) family protein (.1), Insulinase (Peptidase family M16) family protein (.2), Insulinase (Peptidase family M16) family protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G118900 [exp] 997 / 0 AT3G02090 822 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) Potri.008G193200 [exp] 190 / 4e-54 AT1G51980 592 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) Potri.001G191100 [exp] 184 / 1e-51 AT1G51980 620 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) Potri.010G036700 [exp] 172 / 2e-47 AT1G51980 592 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) Potri.013G154600 [exp] 60 / 4e-09 AT1G06900 1461 / 0.0 Insulinase (Peptidase family M16) family protein (.1) Potri.014G149200 [exp] 59 / 6e-09 AT5G42390 1815 / 0.0 stromal processing peptidase, Insulinase (Peptidase family M16) family protein (.1) Potri.006G050700 [exp] 55 / 2e-07 AT2G41790 1503 / 0.0 Insulinase (Peptidase family M16) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004939 [exp] 870 / 0 AT3G02090 869 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) Lus10040886 [exp] 864 / 0 AT3G02090 869 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) Lus10040885 [exp] 860 / 0 AT3G02090 869 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) Lus10004938 [exp] 555 / 0 AT3G02090 546 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) Lus10035000 [exp] 180 / 2e-50 AT1G51980 631 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) Lus10025839 [exp] 178 / 1e-49 AT1G51980 643 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) Lus10038262 [exp] 178 / 1e-49 AT1G51980 637 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) Lus10004937 [exp] 142 / 5e-40 AT3G02090 151 / 6e-44 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) Lus10012926 [exp] 140 / 3e-35 AT3G16480 504 / 3e-173 mitochondrial processing peptidase alpha subunit (.1) Lus10018072 [exp] 53 / 7e-07 AT2G41790 1451 / 0.0 Insulinase (Peptidase family M16) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0094 [poplar] [flax] Peptidase_ME PF00675 [poplar] [flax] Peptidase_M16 Insulinase (Peptidase family M16) CL0094 [poplar] [flax] Peptidase_ME PF05193 [poplar] [flax] Peptidase_M16_C Peptidase M16 inactive domain
Representative CDS sequence Show only first row Show all	>Potri.017G092400.1 pacid=42813068 polypeptide=Potri.017G092400.1.p locus=Potri.017G092400 ID=Potri.017G092400.1.v4.1 annot-version=v4.1 ATGGCTTGGAAGCGCCTTCTAACCCTAGCTCGCCGGCCCCACAGACCTTTATCAGCAACCACGGCCAGATCCTTTTCCAATGCCGCCTCCGTCGCCACCG TCAGTCCCACCACACCATCCACCCCGCCACCACCAACCGCCATGATCTACGACCGATTAGCTGAATCAGTCAAATCAAAGCTCAAACTCCTCGAAAACCC GGACCCAAGATTCCTCAAATACGGGTCACCCCACCCAACTCTCAAAACCCACACCCATATCCTCTCCTCACCTGAAACCCGCATCACTACGCTTCCTAAT GGTCTCCGTGTCGCTACTGAGTCGAATCTGGCTGCTAAAACTGCGACTGTTGGGGTTTGGATTGATGCCGGGTCGAGATTTGAGTCCGATGAGACAAATG GGACTGCTCATTTCTTGGAACATATGATATTTAAGGGAACGGAGAAAAGGGGCGTGAGGGAATTGGAAGAGGAGATAGAGAATATGGGAGGGCATTTGAA TGCGTATACAAGTAGAGAACAGACTACTTATTATGCTAAAGTTATGGACAAAGATGTTAACAAGGCCTTGGATATTTTGGCTGATATTTTGCAGAACTCT ACTTTCGATGAGGGGAGGATATCTAGGGAGAGGGACGTTATTACTTTGGAAATGAAGGAGGTTGAGGGGCAAACCGAGGAAGTAATTTTTGACCATTTGC ATGCAACTGCTTTTCAATACACTCCTTTAGGTAGAACTATTCTGGGACCTGCTAAAAACATCGAGACAATATCCAGGAATGATCTTCAGAACTATATACA AACACACTACACAGCTCCTAGAATGGTGATTGTCGCATCAGGGGCTGTGAAACATGAGGAATTTGTTGGGGAAGTAAAGAAGTTGTTTACGAAGTTATCA TCTGATCCAACTACTGCTGCACAGTTAGTTTCCAAAGACCCTGCATATTTCACTGGTTCTGAGGTCAGGATAATTGATGACGATGTTCCTCTGGCACAAT TCGCTGTCGCTTTTCAAGGAGCATCTTGGACAGATCCAGATTCCATTGCTTTGATGGTCATGCAGGCTATGTTGGGTTCTTGGAACAAGAGTGCAGGAGG TGGAAAGCACATGGGTTCTGAACTAGCACAAAGGGTTGGCATTGATGAAATAGCAGAAAGTATGATGGCTTTCAACACAAACTACAAGGACACTGGTCTT TTTGGTGTTTATGCTGTTGCGAAGCCGGATAGCTTGGATGATTTAGCCTGGGCAATCATGCACGAGACATCTAAGTTATGCTATCGAGTTTCAGAAGCTG ATGTAACGCGTGCTTGTAATCAGTTAAAATCTTCCTTGCTACTTCACATTGATGGAACTAGTCCTGTAGCGGAAGATATTGGGCGCCAGCTACTTACTTA TGGTCGAAGAATCCCATACGCTGAACTGTTTGCTAGGATTGATTCTGTCGATTCAAGCACTATCAAACGTGTTGCAAACCGATTTATTCACGACCAGGAT ATTGCAATTGCTGCCATGGGTCCCATCCAAGGGTTGCCTGACTACAACTGGTTCAGGCGCAGGACCTACTTGAATCGTTACTAG
AA sequence Show only first row Show all	>Potri.017G092400.1 pacid=42813068 polypeptide=Potri.017G092400.1.p locus=Potri.017G092400 ID=Potri.017G092400.1.v4.1 annot-version=v4.1 MAWKRLLTLARRPHRPLSATTARSFSNAASVATVSPTTPSTPPPPTAMIYDRLAESVKSKLKLLENPDPRFLKYGSPHPTLKTHTHILSSPETRITTLPN GLRVATESNLAAKTATVGVWIDAGSRFESDETNGTAHFLEHMIFKGTEKRGVRELEEEIENMGGHLNAYTSREQTTYYAKVMDKDVNKALDILADILQNS TFDEGRISRERDVITLEMKEVEGQTEEVIFDHLHATAFQYTPLGRTILGPAKNIETISRNDLQNYIQTHYTAPRMVIVASGAVKHEEFVGEVKKLFTKLS SDPTTAAQLVSKDPAYFTGSEVRIIDDDVPLAQFAVAFQGASWTDPDSIALMVMQAMLGSWNKSAGGGKHMGSELAQRVGIDEIAESMMAFNTNYKDTGL FGVYAVAKPDSLDDLAWAIMHETSKLCYRVSEADVTRACNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPYAELFARIDSVDSSTIKRVANRFIHDQD IAIAAMGPIQGLPDYNWFRRRTYLNRY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G02090		MPPBETA	Insulinase (Peptidase family M...		Potri.017G092400 [exp]	0	1
AT3G15020		mMDH2	mitochondrial malate dehydroge...		Potri.001G376500 [exp]	1.41	0.9575
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Potri.011G079700 [exp]	3.00	0.9258	Pt-I.1
AT2G20420			ATP citrate lyase (ACL) family...		Potri.002G259600 [exp]	3.46	0.9371
AT5G66680		DGL1	DEFECTIVE GLYCOSYLATION, dolic...		Potri.005G127000 [exp]	4.47	0.9255
AT5G08690			ATP synthase alpha/beta family...		Potri.010G116600 [exp]	4.47	0.9257	PtrAtpB_1,ATP.1
AT5G55070			Dihydrolipoamide succinyltrans...		Potri.011G089200 [exp]	4.69	0.9094
AT5G37510		CI76, EMB1467	embryo defective 1467, NADH-ub...		Potri.017G136950 [exp]	5.29	0.9148
AT3G13920		RH4, TIF4A1, EI...	eukaryotic translation initiat...		Potri.006G225700 [exp]	6.00	0.9058	TIF4.1
AT5G14040		PHT3;1	phosphate transporter 3;1 (.1)		Potri.001G322300 [exp]	6.48	0.9233	PtrPht3-2
AT1G78570		ATRHM1, RHM1, R...	REPRESSOR OF LRX1 1, ARABIDOPS...		Potri.001G383500 [exp]	7.34	0.8945

Compare expression of checked genes

Potri.017G092400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.