Plant FIBer expression Database

Potri.017G092600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G15540 2142 / 0 EMB2773, ATSCC2 EMBRYO DEFECTIVE 2773, ARABIDOPSIS THALIANA SISTER-CHROMATID COHESION 2, PHD finger family protein (.1.2)
AT5G12400 45 / 0.0005 DNA binding;zinc ion binding;DNA binding (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G049100
[exp]
48 / 0.0001 AT5G12400 1084 / 0.0 DNA binding;zinc ion binding;DNA binding (.1)
Potri.001G254300
[exp]
45 / 0.0006 AT5G12400 1020 / 0.0 DNA binding;zinc ion binding;DNA binding (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10015385
[exp]
2390 / 0 AT5G15540 2092 / 0.0 EMBRYO DEFECTIVE 2773, ARABIDOPSIS THALIANA SISTER-CHROMATID COHESION 2, PHD finger family protein (.1.2)
Lus10032966
[exp]
368 / 1e-109 AT5G15540 337 / 3e-99 EMBRYO DEFECTIVE 2773, ARABIDOPSIS THALIANA SISTER-CHROMATID COHESION 2, PHD finger family protein (.1.2)
Lus10014918
[exp]
45 / 0.0007 AT5G12400 1062 / 0.0 DNA binding;zinc ion binding;DNA binding (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0020 TPR PF12765 Cohesin_HEAT HEAT repeat associated with sister chromatid cohesion
CL0020 TPR PF12830 Nipped-B_C Sister chromatid cohesion C-terminus
Representative CDS sequence
>Potri.017G092600.6 pacid=42812913 polypeptide=Potri.017G092600.6.p locus=Potri.017G092600 ID=Potri.017G092600.6.v4.1 annot-version=v4.1
ATGAGCAATTCAAATTCAAATCCAAGCGGTTCGGGTTCGGTTCCTAGAGGAATCGGCCTGTCCAACAGCATACACTCTGAAGTAGCGCCGTGTTTGCCTT
TGCCTTCGCTTCCTGTTTTCTGTGGCGCTTCGGATCCGGAGCTCCGGTTGTTCGACGGAGCTAGTGCTAGAAATAGTAATTTCTGGTTTTTGAATCGAAA
TGAAATTCTGTCTCAGTCTTCCAGAATCGCTGATCTGCTTCGTCAAACCGACGTATCCTACCTGACACTTAGAGATGAGAATAGGGAAACTGCGTCTGAC
AACGTGGAGCGGTTGGAACTTTATGAAGAGGTTCTTCGCTGCAATCCTGATGCATTCGAGTATGTTACTCATGGTAAACAAAGTAAGGGGCAAATTTCTG
GAAATGCAGCATTTGAAAGCAAGCGCATTGAGCTAAGTGTACCTGTTTCGTTTCAAGCACAAAGAGATTATGATGGATTTCAAAATCACCAACCGAAATA
CACCCCTAATGACATTGCCTCATCTCTGAGGAAACCAAAAGTCAAGAAAAAAGGCAGTGATGACATTTCAGCAGTGATTCAGCCAGATCCTGCTGAGCTT
CAAGATGCAACAATTGGAAGCTTCTGTGATATGTTGGAAGACTTTTGTGGAAGAGCTGAAGTTCCTGGTGATGATCGGGAAGAAGCAGAGTGGTTATCGT
TGCCTGCTGCTGACCTCAGAAAGCTTGTGAATGAAATAACATCGTTACGTGCAAAAAAGCTTTTAAATTTGATCCCCGTAGAAGTTCTTGTAAGACTCTT
GAGGGTTCTGGATCACCAAATACATCGAGCTGAAGGCTTATCCATTGATGAATGTGAACATTCAGATTCAGAAGTAGTCTCCTATGTCTTCTGTGCCCTG
GAGTCTATTCATGCAGCTCTAGCTGTAATGGCGCATAATAACATGCCAAAGCAGCTGTATAAAGAAGAGATTATTGAAAGAATTTTGGAGTTCTCTAAGC
ATCAAATAATGGATGTGATGTCTGCTTATGATCCATCATATCGTGCTTTGCATAGGCCTAGTGAAAATGGGGCACCTGAAGGTTATGAAGACGAAGAGCC
TGACCCTGACTATGGTTCAGCTAACAAGAAACGGCGAACTGTAAAGAGTGTAAGAGTGAAGAAGTCATCATCCAACAGGGTCTCTGGTGCTGTGAATACT
ATACTACAAAAACTGTGCACAATACTCGGTTTACTGAAGGATTTGTTGTTGATAGAGAGGTTATCTGATAGTTGCATTCTACAACTGGTGAGGACAAGCT
TTACGACTTTTTTGGTGGACAATATCCAACTTTTGCAGATGAAGGCTATTGGGTTAATCTGTGGGATATTCTATTCATACATACAGCATCGTCCATACAT
CATAGACGAAATAGTTCAGCTACTCTGGAAGTTACCATCCTCAAAGCGAGCACTCAGAGCCTATCACCTGCCTGATGAAGAACAGAGGCAGATTCAGATG
GTCACTGCTTTACTGATTCAGTTGGTTCAGAGCAGTGCAAACCTTCCTGATGCTTTGAGGCAAGCATCGAGTGGTAATTCCATCTTAGAAGTCTCTTTGG
ATGCTAGTTATCCTATCAAGTCCCACGAAGCAGCCACAGAGACCTGCTGTCTTTTCTGGACCCGAGTTCTCCAGCGCTTCACAACTGTCAAGAATCAAGA
TGCTTCTGAACTGAAAGTGATGATGGAGAATCTTGTTACAGATCTACTAACAACTCTCAACTTACCAGAATACCCTTCTTCGTCTCCCATTCTGGAGGTT
CTTTGTGTCTTACTACTTCAGAATGCTGGACTGAAATCCAAGGACGTCTCTGCACGTTCCATGGCCATTGATTTTCTGGGCACCATTGCAGCAAGGTTAA
AGCAGGATGCACTTATTTGTAGTGGGAACAAATTTTGGATATTGCAGGAACTGAGTTGTGGGGATGATGTGGATCTGAGTTTCCCAAAAGATGCATGCTG
TGTTTGCTTAGATGGAAGGGTGGAGAACAGGTTGTTTATGTGTCCGGGTTGTCGCAGATTGTTTCATGCTGATTGCGTGGGAGAGAGAGAACATGAAGCT
CCTAATCGAAGCTGGCACTGTATGATTTGCCTCTGCAAGAATCAACTTCTTGTGTTACAATCTTACAGCGATTCACATTACAAGGATGAGGAAAAAAAGG
ATAATATCCGGTCAAAGAACAATTCGGATGCTTCAGATACAGTAACAAAAGCTGAAATTGTTCAACAAATGCTTTTAAATTACCTCCAAGATGTTGTAAC
TGCTGATGATGCATACCTCTTTGTTCGCTGGTTTTATCTGTGCTTGTGGTACAAGGATGACCCGAAATCTAAACAAAAGTTTATGTACCATCTCACTAGA
CTGAAATCAAACCTTATTGTGCGTGATTCTGGGACTGCATTTTCATTGTTGACGAGGGATTCTGTTAAGAAGATTGCTTTAGCATTGGGACAAAATAGTT
CTTTTTGTAGAGGGTTCGATAAGATTCTTCATATGCTTTTGGCAAGTTTGAGGGAGAATTCTCCTGTAATTAGGGCCAAGGCATTACGAGCAGTCAGTAT
TATTGTAGAAGCTGATCCTGATGTATTACGTGACAAGCGAGTACAATTGGCTGTTGAAGGAAGATTTTGTGATTCAGCAATATCTGTGAGAGAAGCTGCA
TTGGAACTTGTCGGTAGGCATATTGCTTCACACCCTGATGTCGGTCTGCAGTATTTTGAGAAGGTTGCTGAAAGGATTAAAGATACTGGAGTGAGTGTGA
GAAAACGAGCTATCAAAATCATCAGAGACATGTGCATTTCAAATCCAAACTTCACTCAATTTACAACTGCATGTATTGAGATCATATCCCGTGTCAGTGA
TGACGAATCCAGTATTCAGGATCTTGTCTGCAAAACATTTTATGAGTTTTGGTTCGAGGAACCTTCTGGATTGCGAACACAATTTTTTGGAGATGGCAGT
TCTGTGCCACTGGAGGTGGCTAAGAAGACTGAGCAAATTGTTGAGATGTTGAGGAGGATGCCAAGTCATCAGCTTCTTGTCACAGTCATCAAGCGCAATC
TAGCCCTTGACTTTTTCCCTCAATCAGCTAAAGCTGTTGGGATCAACCCTGTGTCACTTGCATCAGTGCGCAAGCGCTGTGAGTTGATGTGCAAGTGCTT
ACTGGAAAGAATACTGCAGGTAGAGGAAATGAATAGTGATGAAGTGGAGCTCTGCACACTTCCTTATGTGCTTGCATTGCATGCATTTTGTGTTGTTGAT
CCAACGCTTTGTGCACCTGCTTCTGATCCCTCCCAGTTCGTTGTTACTCTACAGCCATATCTCAAGAGTCAGGTTGATGACCGAGCTATTGCACAATTAT
TGGAGAGTATAATCTTTATAATTGATTCTGTTCTTCCCTTAATCCGAAAGCTGCCTCAAAGTGTTGTTGAAGAACTAGAGCAAGATCTGAAGCAAATGAT
TGTTCGACATTCGTTTTTGACAGTGGTCCATGCTTGCATCAAGTGTCTTTGTTCTTTGAGTAAAGTAGCAGCAAAGGGTGCTAGTGTAGTTGAGTATCTT
ATTCAGGTTTTTTTCAAACGTTTGGATGCTCAAGGAATCGATAACAAGCAGCTAGCAGGCCGCTCTTTGTTCTGTCTTGGATTGCTTATTCGCTATGGAA
ACTCTTTGCTGAGTATCTCCAACAACAAAAATATTGATGTTGCGAGCAGTCTCAGTTTGTTTAAAAAGCATCTCCTTATGGAGGATTTCGGTATAAAAGT
CAGGTCTTTGCAGGCATTAGGATTTGTTCTTATTGCTAGGCCTGAGTTTATGCTGGAAAAGGACATTGGGAAAATATTGGAGGCAACTTTATCTTCTGGT
TCTCATGTTCGTCTTAAGATGCAAGCTTTGCAAAATATGCATGAATATCTTCTGGATGCTGAAAGCCAAATGGACACAGATAAGACTAATAGTGTAGCTC
ATCATCCTGTAGAAGGGAGCAACAGTGTACCTGTTGCTGCTGGTGCAGGTGATACTAACATCTGTGGTGGTATAGTCCAGCTGTATTGGGATCATATTTT
GGGAAGGTGCTTGGACTTCAACGAACAAGTTCGCCAGACTGCCCTTAAGATTGTGGAAGTAGTACTACGCCAGGGTCTGGTCCATCCTATAACCTGTGTT
CCATATCTAATAGCATTGGAAACGGATCCTCAAGAGTTAAACTCAAAATTAGCCCACCATTTGCTGATGAATATGAATGAGAAGTATCCTGCTTTTTTTG
AAAGCCGATTGGGTGATGGCCTTCAGCTGTCATTTATATTCATGAAATCTATCGTTAATATTTCTCCTGAAATTCCAAACCAAAAACTCCAATCTAAGAC
TGCTGGAAATCTCAAGGGAAAACCTGAAGGTGGCTCCCTATCTCAAGCAAGGCTTGGGGTTTCTCGGATATACAAGCTTATTCGCGGAAACCGAGTTTCA
AGGAACAAATTTATGTCCTCAATTGTGCGAAAATTTGACAATCCAAGCCGGAGTGATTCAGTGATTCCTTTTTTAGTGTACTGCACGGAAATGCTTGCTT
TGCTGCCATTTACTTTACCTGATGAACCTCTGTATTTGATTTATGTTATAAATCGAGTTATTCAAGTAAGAGCAGGGGCACTTGAAGCAAATATGAAGGG
ACTAATCTTACATTTTTCCCAAAGAAATGCTCGAATGGTTAATGAAAATCGGTTCATTCAAAGGGAACTTGTGGAGCCTGTTTCCCATCACATGGACATG
AATGGTACAATTCAACCAAAGCCAGATGGTCAGCCTGATCACAGTCCTTTGAGATCATTTGATCTGAACGGAACAGTTCAAGAACAGCCTGCTGATCATG
CAGTTCTAAACTCTAGTGTCTCAAGATATCCAAAGATGGAGCGTGTGAGCTCTGGTGAGTCCGTAGGCATCTCCAAAGATGATGTGGAGAAAATTCAGGT
TGACTGCCTCGCAGCAACTGCTTTGGAGCTTCTTTTGAAGCTCAAGAGACACCTGAAAATTGTGTATGGCCTTAATGATGCTCGGTGCCAGGCTTTTTCT
CCCACTGAACCCCCAAAGCCAGGAGAGGCTTTCTCAAGGCAGAACATTCCTTTTGACATGAGTCAAACAGGCACCAGTTTGCCGTCCACCTATCAAGATT
TGGTTCAGAGATATCAGGAATTCAAGGGAGCCTTAAAGGAGGATACTGTCGATTACTCAACGTACACAGCAAATATCAAGAGGAAACGACCTGCCCCAAG
AAAGGTGAAATCTGGACGTGTGATGGGAGACGATGAAGACGACGATGAAGACGACGACTGGGCATCCGGGGGTCGGAGGCCGGGCAGTGGCAGGAAAGGC
AACAGCAGTAGAAGTAGGCACCGGCAATAG
AA sequence
>Potri.017G092600.6 pacid=42812913 polypeptide=Potri.017G092600.6.p locus=Potri.017G092600 ID=Potri.017G092600.6.v4.1 annot-version=v4.1
MSNSNSNPSGSGSVPRGIGLSNSIHSEVAPCLPLPSLPVFCGASDPELRLFDGASARNSNFWFLNRNEILSQSSRIADLLRQTDVSYLTLRDENRETASD
NVERLELYEEVLRCNPDAFEYVTHGKQSKGQISGNAAFESKRIELSVPVSFQAQRDYDGFQNHQPKYTPNDIASSLRKPKVKKKGSDDISAVIQPDPAEL
QDATIGSFCDMLEDFCGRAEVPGDDREEAEWLSLPAADLRKLVNEITSLRAKKLLNLIPVEVLVRLLRVLDHQIHRAEGLSIDECEHSDSEVVSYVFCAL
ESIHAALAVMAHNNMPKQLYKEEIIERILEFSKHQIMDVMSAYDPSYRALHRPSENGAPEGYEDEEPDPDYGSANKKRRTVKSVRVKKSSSNRVSGAVNT
ILQKLCTILGLLKDLLLIERLSDSCILQLVRTSFTTFLVDNIQLLQMKAIGLICGIFYSYIQHRPYIIDEIVQLLWKLPSSKRALRAYHLPDEEQRQIQM
VTALLIQLVQSSANLPDALRQASSGNSILEVSLDASYPIKSHEAATETCCLFWTRVLQRFTTVKNQDASELKVMMENLVTDLLTTLNLPEYPSSSPILEV
LCVLLLQNAGLKSKDVSARSMAIDFLGTIAARLKQDALICSGNKFWILQELSCGDDVDLSFPKDACCVCLDGRVENRLFMCPGCRRLFHADCVGEREHEA
PNRSWHCMICLCKNQLLVLQSYSDSHYKDEEKKDNIRSKNNSDASDTVTKAEIVQQMLLNYLQDVVTADDAYLFVRWFYLCLWYKDDPKSKQKFMYHLTR
LKSNLIVRDSGTAFSLLTRDSVKKIALALGQNSSFCRGFDKILHMLLASLRENSPVIRAKALRAVSIIVEADPDVLRDKRVQLAVEGRFCDSAISVREAA
LELVGRHIASHPDVGLQYFEKVAERIKDTGVSVRKRAIKIIRDMCISNPNFTQFTTACIEIISRVSDDESSIQDLVCKTFYEFWFEEPSGLRTQFFGDGS
SVPLEVAKKTEQIVEMLRRMPSHQLLVTVIKRNLALDFFPQSAKAVGINPVSLASVRKRCELMCKCLLERILQVEEMNSDEVELCTLPYVLALHAFCVVD
PTLCAPASDPSQFVVTLQPYLKSQVDDRAIAQLLESIIFIIDSVLPLIRKLPQSVVEELEQDLKQMIVRHSFLTVVHACIKCLCSLSKVAAKGASVVEYL
IQVFFKRLDAQGIDNKQLAGRSLFCLGLLIRYGNSLLSISNNKNIDVASSLSLFKKHLLMEDFGIKVRSLQALGFVLIARPEFMLEKDIGKILEATLSSG
SHVRLKMQALQNMHEYLLDAESQMDTDKTNSVAHHPVEGSNSVPVAAGAGDTNICGGIVQLYWDHILGRCLDFNEQVRQTALKIVEVVLRQGLVHPITCV
PYLIALETDPQELNSKLAHHLLMNMNEKYPAFFESRLGDGLQLSFIFMKSIVNISPEIPNQKLQSKTAGNLKGKPEGGSLSQARLGVSRIYKLIRGNRVS
RNKFMSSIVRKFDNPSRSDSVIPFLVYCTEMLALLPFTLPDEPLYLIYVINRVIQVRAGALEANMKGLILHFSQRNARMVNENRFIQRELVEPVSHHMDM
NGTIQPKPDGQPDHSPLRSFDLNGTVQEQPADHAVLNSSVSRYPKMERVSSGESVGISKDDVEKIQVDCLAATALELLLKLKRHLKIVYGLNDARCQAFS
PTEPPKPGEAFSRQNIPFDMSQTGTSLPSTYQDLVQRYQEFKGALKEDTVDYSTYTANIKRKRPAPRKVKSGRVMGDDEDDDEDDDWASGGRRPGSGRKG
NSSRSRHRQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G15540 EMB2773, ATSCC2 EMBRYO DEFECTIVE 2773, ARABIDO... Potri.017G092600
[exp]
0 1
AT4G31880 unknown protein Potri.006G263300
[exp]
1.00 0.9156
AT2G19390 unknown protein Potri.006G146600
[exp]
2.44 0.9008
AT2G44950 RDO4, HUB1 REDUCED DORMANCY 4, histone mo... Potri.014G055800
[exp]
3.46 0.8939
AT5G15920 EMB2782, SMC5 EMBRYO DEFECTIVE 2782, structu... Potri.001G262600
[exp]
6.00 0.8935
AT5G55600 agenet domain-containing prote... Potri.001G365800
[exp]
6.32 0.8834
AT5G60410 ATSIZ1, SIZ1 DNA-binding protein with MIZ/S... Potri.010G219600
[exp]
7.00 0.8848
AT5G51230 C2H2ZnF AtEMF2, CYR1, V... CYTOKININ RESISTANT 1, EMBRYON... Potri.003G150450
[exp]
7.81 0.8202
AT1G24706 EMB2793, AtTHO2 EMBRYO DEFECTIVE 2793, THO2 (.... Potri.013G085000
[exp]
7.93 0.8787
AT4G17330 ATG2484-1 G2484-1 protein (.1) Potri.001G157300
[exp]
8.36 0.8910
AT1G77800 PHD finger family protein (.1.... Potri.002G089400
[exp]
8.48 0.8877

Potri.017G092600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.