Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ATEXPA21.1,PtEXPA27
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39280 325 / 6e-113 ATEXP23, ATHEXPALPHA1.17, ATEXPA23 EXPANSIN 23, expansin A23 (.1) AT5G39300 325 / 9e-113 ATHEXPALPHA1.18, ATEXP25, ATEXPA25 EXPANSIN 25, expansin A25 (.1) AT5G39270 308 / 3e-106 ATHEXPALPHA1.15, ATEXP22, ATEXPA22 EXPANSIN 22, expansin A22 (.1) AT5G39290 306 / 2e-105 ATHEXPALPHA1.16, ATEXP26 EXPANSIN 26, expansin A26 (.1) AT5G02260 301 / 1e-103 ATHEXPALPHA1.10, ATEXP9, ATEXPA9 expansin A9 (.1) AT5G39310 295 / 1e-100 ATHEXPALPHA1.19, ATEXP24, ATEXPA24 EXPANSIN 24, expansin A24 (.1) AT5G56320 293 / 2e-100 ATHEXPALPHA1.5, ATEXP14, ATEXPA14 EXPANSIN 14, expansin A14 (.1) AT2G39700 287 / 4e-98 ATHEXPALPHA1.6, ATEXP4, ATEXPA4 expansin A4 (.1) AT3G55500 285 / 4e-97 ATHEXPALPHA1.7, ATEXP16, ATEXPA16 EXPANSIN 16, expansin A16 (.1) AT2G37640 284 / 9e-97 ATHEXPALPHA1.9, ATEXP3, ATEXPA3, EXP3 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G057100 [exp] 295 / 3e-101 AT2G39700 459 / 6e-166 expansin A4 (.1) Potri.010G202500 [exp] 294 / 7e-101 AT2G39700 473 / 2e-171 expansin A4 (.1) Potri.001G240900 [exp] 294 / 1e-100 AT2G39700 449 / 6e-162 expansin A4 (.1) Potri.009G031800 [exp] 292 / 5e-100 AT2G39700 453 / 1e-163 expansin A4 (.1) Potri.006G086100 [exp] 292 / 6e-100 AT2G37640 435 / 2e-156 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1) Potri.017G085300 [exp] 285 / 2e-97 AT1G26770 355 / 5e-125 ARABIDOPSIS THALIANA EXPANSIN ALPHA 1.1, ARABIDOPSIS THALIANA EXPANSIN 10, expansin A10 (.1.2) Potri.001G001100 [exp] 283 / 2e-96 AT2G03090 375 / 5e-133 EXPANSIN 15, expansin A15 (.1) Potri.013G060800 [exp] 282 / 4e-96 AT2G03090 356 / 1e-125 EXPANSIN 15, expansin A15 (.1) Potri.016G135200 [exp] 282 / 5e-96 AT2G40610 400 / 6e-143 expansin A8 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012747 [exp] 314 / 1e-108 AT5G39280 317 / 1e-109 EXPANSIN 23, expansin A23 (.1) Lus10023407 [exp] 300 / 3e-103 AT2G39700 445 / 3e-160 expansin A4 (.1) Lus10040286 [exp] 299 / 1e-102 AT2G39700 447 / 4e-161 expansin A4 (.1) Lus10000304 [exp] 296 / 1e-101 AT5G39280 311 / 8e-108 EXPANSIN 23, expansin A23 (.1) Lus10040801 [exp] 291 / 1e-99 AT2G39700 456 / 1e-164 expansin A4 (.1) Lus10016533 [exp] 291 / 2e-99 AT2G39700 456 / 9e-165 expansin A4 (.1) Lus10024388 [exp] 283 / 2e-96 AT2G37640 430 / 3e-154 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1) Lus10020257 [exp] 283 / 6e-96 AT2G03090 349 / 2e-122 EXPANSIN 15, expansin A15 (.1) Lus10036763 [exp] 281 / 1e-95 AT1G69530 426 / 3e-153 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Lus10002638 [exp] 280 / 7e-94 AT2G37640 347 / 6e-120 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [poplar] [flax] E-set PF01357 [poplar] [flax] Expansin_C Expansin C-terminal domain CL0199 [poplar] [flax] DPBB PF03330 [poplar] [flax] DPBB_1 Lytic transglycolase
Representative CDS sequence Show only first row Show all	>Potri.017G092700.1 pacid=42813370 polypeptide=Potri.017G092700.1.p locus=Potri.017G092700 ID=Potri.017G092700.1.v4.1 annot-version=v4.1 ATGGCTAGTTTCAAGAACTCCTTTGCTTGTTTAGTGTTAATGGCACTTCTGGGAGTGGCTAGGAGTGACCAAATTAGCTTTGGTGAAAAAATAGACAGTT CATGGTATGATGCACATGCAACTTTTTATGGGGACATAAAAGGAGGACAGACAATGATGGGAGCTTGTGGCTATGGCGATCTCTTCAAACAAGGGTATGG ACTTCAAACAGCAGCCTTAAGCACAGCACTCTTCAACAATGGACAAACCTGTGGTGCTTGCTTTGAACTCAAGTGTGTGAATGATCCACAATGGTGCAAA AACCATGCTGGCACCATCAAAATCACAGCAACCAATTTATGCCCTCCCAATTACGGAGCTTCCAATGCTTGGTGCAACCCACCACAGCAACATTTTGATC TATCGATGCCCATGTTTCTAACGATCGCAGAATATAGAGCAGGGATTGTCCCTGTTAAGTATCGCAGAATCTTGTGTTCCAAGGAAGGAGGGGTTAAGTT TGACATTCATGGCAATCCCTATTGGATGCTTGTGTTAGTGCGCAATGTTGCAGGGGCTGGTGAAGTTATTAATGTCAGGATTAAGGGCTCACAAACTCGT TGGATACAGATGTCAAGAAACTGGGGACAGAACTGGCAGACCGGGACTGATCTCGTTGGACAAAGCTTGTCATTCCTAGTTACTACAAGTGACTACAAGA GATTATACTTTAATGATGTTGCCGGAGCTGACTGGAGTTTTGGACAAGCTTACGATGGGAAAATAAACTTTTAG
AA sequence Show only first row Show all	>Potri.017G092700.1 pacid=42813370 polypeptide=Potri.017G092700.1.p locus=Potri.017G092700 ID=Potri.017G092700.1.v4.1 annot-version=v4.1 MASFKNSFACLVLMALLGVARSDQISFGEKIDSSWYDAHATFYGDIKGGQTMMGACGYGDLFKQGYGLQTAALSTALFNNGQTCGACFELKCVNDPQWCK NHAGTIKITATNLCPPNYGASNAWCNPPQQHFDLSMPMFLTIAEYRAGIVPVKYRRILCSKEGGVKFDIHGNPYWMLVLVRNVAGAGEVINVRIKGSQTR WIQMSRNWGQNWQTGTDLVGQSLSFLVTTSDYKRLYFNDVAGADWSFGQAYDGKINF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G39280		ATEXP23, ATHEXP...	EXPANSIN 23, expansin A23 (.1)		Potri.017G092700 [exp]	0	1	ATEXPA21.1,PtEXPA27
AT2G33480	NAC	ANAC041	NAC domain containing protein ...		Potri.017G031000 [exp]	1.00	0.7972	NAC131
AT2G18260		ATSYP112, SYP11...	syntaxin of plants 112 (.1)		Potri.009G117900 [exp]	2.82	0.7213
					Potri.013G031151 [exp]	6.92	0.6428
AT3G26660	AS2	LBD24	LOB domain-containing protein ...		Potri.015G135900 [exp]	9.48	0.6124	LBD23.2
AT3G26660	AS2	LBD24	LOB domain-containing protein ...		Potri.012G133800 [exp]	13.85	0.5492	Pt-ARR13.1,PtRR17
AT5G28470			Major facilitator superfamily ...		Potri.006G091600 [exp]	15.90	0.5742
AT2G44810		DAD1	DEFECTIVE ANTHER DEHISCENCE 1,...		Potri.004G128800 [exp]	18.33	0.4855
AT1G16820			vacuolar ATP synthase catalyti...		Potri.005G106933 [exp]	29.66	0.5348
					Potri.008G113301 [exp]	32.40	0.5245
AT5G19040		ATIPT5	Arabidopsis thaliana ISOPENTEN...		Potri.004G150900 [exp]	41.89	0.4889

Compare expression of checked genes

Potri.017G092700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.