Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39250 335 / 6e-117 F-box family protein (.1) AT3G44326 47 / 5e-06 F-box family protein (.1) AT2G36090 43 / 0.0001 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G119500 [exp] 453 / 7e-164 AT5G39250 347 / 8e-122 F-box family protein (.1) Potri.001G452000 [exp] 50 / 6e-07 AT2G36090 115 / 2e-29 F-box family protein (.1) Potri.004G199300 [exp] 46 / 1e-05 AT2G27310 248 / 3e-80 F-box family protein (.1) Potri.006G044801 [exp] 45 / 3e-05 AT5G04010 114 / 8e-30 F-box family protein (.1) Potri.009G160700 [exp] 42 / 0.0002 AT2G27310 221 / 9e-70 F-box family protein (.1) Potri.002G082500 [exp] 42 / 0.0002 AT1G21760 474 / 7e-170 F-box protein 7 (.1) Potri.014G165700 [exp] 40 / 0.0003 AT5G48170 144 / 9e-45 SNEEZY, SLEEPY2, F-box family protein (.1) Potri.005G178600 [exp] 41 / 0.0004 AT1G21760 479 / 6e-172 F-box protein 7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032969 [exp] 390 / 9e-139 AT5G39250 351 / 1e-123 F-box family protein (.1) Lus10013309 [exp] 47 / 9e-06 AT2G27310 247 / 4e-80 F-box family protein (.1) Lus10042716 [exp] 43 / 0.0002 AT1G69740 644 / 0.0 Aldolase superfamily protein (.1.2) Lus10029676 [exp] 41 / 0.0006 AT1G21760 444 / 5e-156 F-box protein 7 (.1) Lus10031031 [exp] 40 / 0.001 AT5G04010 106 / 4e-27 F-box family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF12937 [poplar] [flax] F-box-like F-box-like
Representative CDS sequence Show only first row Show all	>Potri.017G092800.1 pacid=42813978 polypeptide=Potri.017G092800.1.p locus=Potri.017G092800 ID=Potri.017G092800.1.v4.1 annot-version=v4.1 ATGTCATATGTAGAAATTCTGAAGGCTGTTTTCCCTTTACTGGAGGGTGCAGATCTGGCTTCATGCGTGGCAGTGTGTAAACAGTGGAGAGATATAGCGC AAGATGATTACTTATGGAAATGTCTTTGTGCCAAGAGATGGCCTTCCATTTGCAAGAGGCCAAACCCTCCAACTGTCACATACTACAAGCTATATCAGAC CTTTTATAAGCACCAGCGTCAACAAACCCTGCTTCCTCCAAGACTTTCCTTTGACAATTTGGAATTCTTCATCGACATCTGGACCAGAGATAAATTGATC TTCTCTGAGGTGGTCTCAGGCCCTGTTTTGCAAACTGGAATCAAATGCCCACCTCCTAGAATTTGTGATAGGCTTGGATTTCATCTTGAAGGCCCCGATT ATAAGATGATTTTACCTGTTGAACCAAGGTTCAAAGCCCCCTTAGGCGAGACTGTAAGCGTTTCAGTGCTTGTGGGGCGGAAGGATAATAATAAGGTTGC TTGCATAATCAATAAATCTGTCTTTGATTATATCGATCGGACAGCCTATAGGGCCATGGCGTTTGATTATCTTGGTTTCTCACCAGCACATCCTTTTGTA CCAGGAATCCGGGCTTGGATTTCTTTGCTATTCGTGGATGATAAAAATGACAGTGTTCTTGATGTCTTTGGGATTGAAATAGATTTTTGTGATGCTGCAA AATCCAGGGATGAGGTTTTGTGGCTGCTTGACATACTTGACTGGAAGTGA
AA sequence Show only first row Show all	>Potri.017G092800.1 pacid=42813978 polypeptide=Potri.017G092800.1.p locus=Potri.017G092800 ID=Potri.017G092800.1.v4.1 annot-version=v4.1 MSYVEILKAVFPLLEGADLASCVAVCKQWRDIAQDDYLWKCLCAKRWPSICKRPNPPTVTYYKLYQTFYKHQRQQTLLPPRLSFDNLEFFIDIWTRDKLI FSEVVSGPVLQTGIKCPPPRICDRLGFHLEGPDYKMILPVEPRFKAPLGETVSVSVLVGRKDNNKVACIINKSVFDYIDRTAYRAMAFDYLGFSPAHPFV PGIRAWISLLFVDDKNDSVLDVFGIEIDFCDAAKSRDEVLWLLDILDWK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G39250			F-box family protein (.1)		Potri.017G092800 [exp]	0	1
AT2G18630			Protein of unknown function (D...		Potri.005G127200 [exp]	27.56	0.6137
AT2G20740			Tetraspanin family protein (.1...		Potri.019G101800 [exp]	28.49	0.7639
AT4G10030			alpha/beta-Hydrolases superfam...		Potri.019G074600 [exp]	30.16	0.7775
AT5G62020	HSF	AT-HSFB2A	ARABIDOPSIS THALIANA HEAT SHOC...		Potri.012G138900 [exp]	35.49	0.6486
					Potri.006G140801 [exp]	36.18	0.7477
AT3G05327			Cyclin family protein (.1)		Potri.005G033600 [exp]	36.90	0.7736
AT2G42280	bHLH	bHLH130	basic helix-loop-helix (bHLH) ...		Potri.006G057600 [exp]	42.66	0.6747
AT4G21980		ATG8A, APG8A	AUTOPHAGY-RELATED 8A, AUTOPHAG...		Potri.011G004300 [exp]	43.06	0.7038
					Potri.001G379150 [exp]	44.63	0.7236
AT1G16250			Galactose oxidase/kelch repeat...		Potri.010G004500 [exp]	46.98	0.6931

Compare expression of checked genes

Potri.017G092800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.