Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69830 519 / 5e-170 ATAMY3, AMY3 alpha-amylase-like 3 (.1) AT1G76130 431 / 2e-142 ATAMY2, AMY2 ARABIDOPSIS THALIANA ALPHA-AMYLASE-LIKE 2, alpha-amylase-like 2 (.1) AT4G25000 345 / 2e-109 AMY1, AMY3, ATAMY1 alpha-amylase-like (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G092900 [exp] 523 / 3e-171 AT1G69830 1236 / 0.0 alpha-amylase-like 3 (.1) Potri.002G014300 [exp] 438 / 5e-145 AT1G76130 709 / 0.0 ARABIDOPSIS THALIANA ALPHA-AMYLASE-LIKE 2, alpha-amylase-like 2 (.1) Potri.014G029400 [exp] 409 / 4e-134 AT4G25000 580 / 0.0 alpha-amylase-like (.1) Potri.002G126300 [exp] 398 / 1e-129 AT4G25000 591 / 0.0 alpha-amylase-like (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013270 [exp] 533 / 5e-175 AT1G69830 1180 / 0.0 alpha-amylase-like 3 (.1) Lus10036717 [exp] 528 / 3e-173 AT1G69830 1175 / 0.0 alpha-amylase-like 3 (.1) Lus10030793 [exp] 529 / 3e-170 AT1G69830 1173 / 0.0 alpha-amylase-like 3 (.1) Lus10037211 [exp] 518 / 2e-169 AT1G69830 1156 / 0.0 alpha-amylase-like 3 (.1) Lus10021836 [exp] 433 / 5e-143 AT1G76130 700 / 0.0 ARABIDOPSIS THALIANA ALPHA-AMYLASE-LIKE 2, alpha-amylase-like 2 (.1) Lus10042655 [exp] 363 / 2e-116 AT4G25000 567 / 0.0 alpha-amylase-like (.1) Lus10021728 [exp] 362 / 6e-116 AT4G25000 563 / 0.0 alpha-amylase-like (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00128 [poplar] [flax] Alpha-amylase Alpha amylase, catalytic domain CL0369 [poplar] [flax] GHD PF07821 [poplar] [flax] Alpha-amyl_C2 Alpha-amylase C-terminal beta-sheet domain
Representative CDS sequence Show only first row Show all	>Potri.017G093200.1 pacid=42813375 polypeptide=Potri.017G093200.1.p locus=Potri.017G093200 ID=Potri.017G093200.1.v4.1 annot-version=v4.1 ATGGGAACCATTTTGATGCCCGGGGCCACATTGGGGATCCTCCAACAGAAAAACATTAATTTTGTTTCAAGTTTGTGTCTTGTTCACCACCATTCTCTCA TCTTTCCTCCTGCGCGAACAAGGAAAAGGAGACTGTTGAGTAATGGCAACTGGAATCGGAAGTCGAGAACCGTTGTTTTTTCAACTGTGGATGATTCCAA TGACAGCTCTGCTGATATGGTTGATGATGATAATGGTTTTATGTTACGAGGAACTGAGGACTTGGTGATAGAAGAAAACGAATTAGTTGCAACTAAGAAA GCTCTTTCTGAGGCTCGGGCCAGACAGGAAGCCATTGAAAAAGAAAGGGATCAGTTGCTTGAAGAGTTGGCTCAGTCCCAGGCGAAACAACAAGAGCATG TTGCTACCATATTGCGTGACAAGGAAGTTGCTATTACAGAACTTGAGGCTGCCAAATCTCTGTTCCACAATAAGCTTCAGGATTCGGTGGAAGAGAAGTT CACCTTAGAATCTAAACTGGTTTTAGCAAAACAAGATGCTGTTGAACTTGCTGTACAAGTTGAAAAGTTGGCAGAGATTGCTTTCCAGCAGGCAACATCT CATATACTTGAAGATGCCCAGCGGAGAGTATCAGCTGCTGAAACTTCTGCTGCTGAAGCTGCCTTTCATATTGAAGAACAAGTTAGAATTGCAACTGAAG GCACCATATTGTCAATTGTCGAACAGTCAAAAGATGCTATAGAGAAGGCCCTGGATGTGGCAGAAAAAGCTGGTGACTATGCTACAAGAGCTGTGGCAGT CTTTACTGATGGAATTAATCCTGTTGATGAGATTGCATCTGTTCAATCAGAAAATATTAAGTTACAAGGAATTGTAAATGATCTGGAATCTCAACTACTG ATCACAAGAAATGAGATAGCTAAGTTGAAGGTGGAGTTAGAACAGGTCAATGCACAAGCAAAAACATCTGAACTCCATGCTGAAGATGCTGAGAAAGCTC TGCTTGAATTTCAGGAGTCAAACAGGGAAATGACTATCCAGCGGGAAGAGGAAATCAACTCTTTGCTGGAGAAAATGAAGAAAGATGCTGCTGAAAAAAA GAAGGCTGCATCCAAGGCATTTAAGGCTCAGTTGGAAAGCATCAAGGCTGCTATCAAAGCTGCCAAAGAAACAGCACATTCAAGAAATGAGGCTTACATG AGAAGATGTGAAGCATTGCAGAGATCATTGAGGGCCTCTGAAGCTGCTTCAAAGATGTGGAAACACAGAGCAGAAATTGCAGAGTCACTATTATTAAAGG AGGAAGAGGATGAAGATGCCATCTATATAGTCAATGGTGGGCGTATAGACCTTTTGACAGATGATGATTCACAGAAATGGAAACTGTTGAGTGATGGTCC TCGTAGAGAGACACCTCACTGGATGGCGAGGAGGATAAGAAGCATCCGTCCCAAGTTTCCGCCAAGAAAGATTGATGTATCTGAAGCATTGACATCAAAT TTTAGACCACTGGACCTGCCCAAACCTGATGAAGTGTGGTCAATTGCTCAAGAAAAGCTTAAGGAAAGGGATACACTTATTGAACATGTAATTGAGAAAG AAACAATAGAGAAAAAGCGAAAGGCTCTAGAACGTGCTCTTCAACGGAAGACCATACAATGGCAGAAGACCCCTGAGGAAACAAAATTAGAGCCAGGAAC TGGAACAGGACGTGAGATTGTGTTTCAAGGTTTCAATTGGGAAAGTTGGAGAAAGCAGTGGTACCTGGATTTAGCTCCTAAAGCTGCTGATTTATCTCGA TGTGGAGTAACAGCAGTTTGGCTCCCTCCACCAACAGAATCTGTTGCCCCTCAAGGTTATATGCCTTCTGATCTCTACAACTTGAACTCTGCATATGGTT CTGTGGAAGAACTGAAACACTGCGTAGAGGAAATGCATTCTCAAGATCTTCTGGCCTTGGGAGATGTTGTACTCAATCATCGATGTGCGCAGAAACAGAG TCCAAATGGTGTTTGGAACATTTATGGTGGAAAGCTTGCATGGGGTCCTGAAGCAATTGTGTGTGATGATCCAAATTTCCAGGGTAACGGAAATCCATCA AGTGGTGATGTCTTCCATGCTGCTCCAAACATTGACCATTCCCAGGACTTTGTGAGAAGAGATATAAAGGATTGGCTAAATTGGCTTCGAAATGATATTG GTTTTGATGGTTGGCGCCTTGACTTTGTAAGGGGCTTCTCTGGCACATATGTTAAAGAATATATTGAAGCTTCAAATCCTGCGTTTGCTATTGGAGAATA CTGGGATAGTTTAGCTTATGAACAAGGTAGCTTGTGCTACAATCAAGATGTTCATCGGCAGAGGATAGTCAATTGGATCAATGCCACAGGAGGTACTTCT TCAGCGTTTGATGTCACCACAAAGGGAATACTGCACTCTGCTCTGCACAACCAATATTGGAGACTAATCGATCCCCAAGGAAAACCAACTGGAGTGATGG GATGGTGGCCCTCACGTGCTGTCACTTTTTTGGAGAACCATGACACAGGATCAACTCAGGGTCATTGGCCATTTCCTCGAGATAAGCTGACACAAGGATA TGCATACATTTTAACCCATCCAGGAACGCCCACAATATTTTATGATCACTTCTATGATTTTGGCTTCCGCGATGTCATCACTGAGCTTATTGAGGCTCGA AGACGGGCTGGGATCCATTGTCGGAGCTCTGTCAAGATATACCATGCGAACAATGAAGGTTATGTTGCACAAATAGGTGATACACTAGTGATGAAGCTTG GACATTTTGATTGGAACCCCTCAAAGGAAAATAATCTGGATGGAAGTTGGCAAAAATTTGTGGACAAAGGATCAGATTATCAATTGTGGTTGAGACAATA G
AA sequence Show only first row Show all	>Potri.017G093200.1 pacid=42813375 polypeptide=Potri.017G093200.1.p locus=Potri.017G093200 ID=Potri.017G093200.1.v4.1 annot-version=v4.1 MGTILMPGATLGILQQKNINFVSSLCLVHHHSLIFPPARTRKRRLLSNGNWNRKSRTVVFSTVDDSNDSSADMVDDDNGFMLRGTEDLVIEENELVATKK ALSEARARQEAIEKERDQLLEELAQSQAKQQEHVATILRDKEVAITELEAAKSLFHNKLQDSVEEKFTLESKLVLAKQDAVELAVQVEKLAEIAFQQATS HILEDAQRRVSAAETSAAEAAFHIEEQVRIATEGTILSIVEQSKDAIEKALDVAEKAGDYATRAVAVFTDGINPVDEIASVQSENIKLQGIVNDLESQLL ITRNEIAKLKVELEQVNAQAKTSELHAEDAEKALLEFQESNREMTIQREEEINSLLEKMKKDAAEKKKAASKAFKAQLESIKAAIKAAKETAHSRNEAYM RRCEALQRSLRASEAASKMWKHRAEIAESLLLKEEEDEDAIYIVNGGRIDLLTDDDSQKWKLLSDGPRRETPHWMARRIRSIRPKFPPRKIDVSEALTSN FRPLDLPKPDEVWSIAQEKLKERDTLIEHVIEKETIEKKRKALERALQRKTIQWQKTPEETKLEPGTGTGREIVFQGFNWESWRKQWYLDLAPKAADLSR CGVTAVWLPPPTESVAPQGYMPSDLYNLNSAYGSVEELKHCVEEMHSQDLLALGDVVLNHRCAQKQSPNGVWNIYGGKLAWGPEAIVCDDPNFQGNGNPS SGDVFHAAPNIDHSQDFVRRDIKDWLNWLRNDIGFDGWRLDFVRGFSGTYVKEYIEASNPAFAIGEYWDSLAYEQGSLCYNQDVHRQRIVNWINATGGTS SAFDVTTKGILHSALHNQYWRLIDPQGKPTGVMGWWPSRAVTFLENHDTGSTQGHWPFPRDKLTQGYAYILTHPGTPTIFYDHFYDFGFRDVITELIEAR RRAGIHCRSSVKIYHANNEGYVAQIGDTLVMKLGHFDWNPSKENNLDGSWQKFVDKGSDYQLWLRQ

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G69830		ATAMY3, AMY3	alpha-amylase-like 3 (.1)		Potri.017G093200 [exp]	0	1
AT5G48300		APS1, ADG1	ADP-GLUCOSE PYROPHOSPHORYLASE ...		Potri.014G171800 [exp]	1.00	0.9135
AT2G20740			Tetraspanin family protein (.1...		Potri.006G241400 [exp]	4.89	0.8987
AT5G12950			Putative glycosyl hydrolase of...		Potri.003G206000 [exp]	14.89	0.8999
AT5G03650		SBE2.2	starch branching enzyme 2.2 (....		Potri.006G115100 [exp]	20.97	0.8786
AT3G05345			Chaperone DnaJ-domain superfam...		Potri.013G021000 [exp]	31.62	0.8855
AT4G38620	MYB	AtMYB4	myb domain protein 4 (.1)		Potri.006G221800 [exp]	47.24	0.8371
AT3G21070		NADK1, ATNADK-1	NAD kinase 1 (.1.2)		Potri.001G256100 [exp]	57.96	0.8819
AT2G37330		ALS3	aluminum sensitive 3 (.1)		Potri.016G082100 [exp]	60.81	0.8501
AT1G13750			Purple acid phosphatases super...		Potri.010G158250 [exp]	84.08	0.8705
AT5G17520		MEX1, RCP1	MALTOSE EXCESS 1, root cap 1 (...		Potri.013G076100 [exp]	88.03	0.8727

Compare expression of checked genes

Potri.017G093200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.