Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15550 665 / 0 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G52820 81 / 3e-16 WD-40 repeat family protein / notchless protein, putative (.1) AT5G64730 69 / 7e-13 Transducin/WD40 repeat-like superfamily protein (.1) AT5G16750 70 / 1e-12 TOZ TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) AT2G43770 67 / 5e-12 Transducin/WD40 repeat-like superfamily protein (.1) AT1G48630 67 / 6e-12 RACK1B_AT receptor for activated C kinase 1B (.1) AT2G41500 67 / 7e-12 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) AT3G18130 66 / 9e-12 RACK1C_AT receptor for activated C kinase 1C (.1) AT4G15900 61 / 6e-10 PRL1 pleiotropic regulatory locus 1 (.1) AT5G08390 61 / 1e-09 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G058000 [exp] 73 / 1e-13 AT5G52820 811 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Potri.012G060800 [exp] 68 / 7e-12 AT1G49040 1782 / 0.0 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3) Potri.001G221000 [exp] 64 / 4e-11 AT2G26060 523 / 0.0 embryo defective 1345, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.002G051900 [exp] 63 / 9e-11 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G049500 [exp] 64 / 1e-10 AT1G49040 1810 / 0.0 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3) Potri.010G012800 [exp] 63 / 1e-10 AT4G15900 731 / 0.0 pleiotropic regulatory locus 1 (.1) Potri.013G079600 [exp] 63 / 2e-10 AT5G16750 1186 / 0.0 TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) Potri.019G087200 [exp] 62 / 3e-10 AT1G71840 515 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.006G045800 [exp] 62 / 3e-10 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037439 [exp] 691 / 0 AT5G15550 635 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10041271 [exp] 689 / 0 AT5G15550 635 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10024727 [exp] 687 / 0 AT5G15550 635 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10032344 [exp] 684 / 0 AT5G15550 639 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10021059 [exp] 79 / 2e-15 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10004167 [exp] 72 / 4e-13 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10001301 [exp] 69 / 2e-12 AT5G16750 1159 / 0.0 TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) Lus10023563 [exp] 69 / 4e-12 AT1G49040 1743 / 0.0 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3) Lus10039597 [exp] 68 / 4e-12 AT5G52820 792 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Lus10029493 [exp] 67 / 8e-12 AT5G52820 786 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat CL0072 [poplar] [flax] Ubiquitin PF08154 [poplar] [flax] NLE NLE (NUC135) domain
Representative CDS sequence Show only first row Show all	>Potri.017G093300.3 pacid=42814340 polypeptide=Potri.017G093300.3.p locus=Potri.017G093300 ID=Potri.017G093300.3.v4.1 annot-version=v4.1 ATGGGCACGGGCATGGACATGGACAGTGATGTAGAAGAGAGGCGAGTTCAAGTACGATTTATAACAAAATTGAAGCCACCCTTTAAAGTCCCAAATACTT CAATTGCTATCCCTGCTAATCTCACCCGTCTTGGTCTCTCCACTATCGTCAATTCCCTCCTCAAAGCCGGGGATGATGAATGGGAATCGCAACCGTTTGA TTTTCTGATTGATGGGGAATTGGTTCGCTTGCCACTTGAACAGTTTCTGCTTGCCAAGGGCATTTCTGCGGAGAAGGTATTGGAAATTGAATACACAAGG GCGGTAGTCCTGCAGAAAGAGGATGAGCCTTCTTTACATGATGACTGGGTCAGTGCTGTTGATGGTTCTTGTCCACGGTTCATTTTGACTGGCTGCTACG ATAATCTTGGGAGGGTGTGGAAAGCTGCTGGGGAATGTACTCATATATTAGAGGGACATGGTGGTGCAATTACTTCTGTCAGTGTTGTTAACTCAGAAGG GACTGATAGTGTTACTGTAGCCACTGCCTCAAAAGATGAAACTCTGAGGCTGTGGAAGTTTGATACAGAGGAGCATTTAGATCAGCCTTCAAAGATCAGG GCCTTCAAAATTTTGCGTGGGCATAATGCACCTGTTCAAAGTGTTGCAGCAGAGGCTTCTGGAAGCATGATTTGTTCTGGTTCCTGGGACTGTACAATCA ATTTATGGCGGACAAACGAGTCTGATACTGAGGGTGATTTAGTATCAATTAAAAAGAGAAAAGTGAAGAACAAAGCTGGAGAGTCTCAGTTGGAGGGGGG GGCTTTGTCTACACTTGTGGGCCATACTCAATGTGTATCCTCGGTCTATTGGCCAGAACCCAATACAATTTATTCTGCATCCTGGGATCATTCTGTTAGA AGATGGGATGTTGAGATGGGCAAAGATTTGTCGAACATATTCTGTGGGAAAGCCCTCCACTGCTTGCATGTTGGAGGTGAAGGTTCTGCCCTTATTGCTG CTGGTGGCTCTGACCCTATCCTTAGGGTATGGGATCCACGAAAACCAGGAACTTCTGCTCCTATTTATCAGTTCTCTTCACATAATTCTTGGATTTCGGC ATGCAAGTGGCATTCTGAATCGTTGTTTCATCTGCTTTCTGCATCTTATGATGGGAAACTCATGTTGTGGGATCTAAGAACTGCGTGGCCTCTGGCTATT ATTGATTCACATGAGGACAAGGTGTTATGTGCTGACTGGTGGAAAGGTGATAGTGTGATCAGTGGTGGGGTGGACTCGAAGCTCCGCATATCCTCTGGAG TTTCTGTGCTATGA
AA sequence Show only first row Show all	>Potri.017G093300.3 pacid=42814340 polypeptide=Potri.017G093300.3.p locus=Potri.017G093300 ID=Potri.017G093300.3.v4.1 annot-version=v4.1 MGTGMDMDSDVEERRVQVRFITKLKPPFKVPNTSIAIPANLTRLGLSTIVNSLLKAGDDEWESQPFDFLIDGELVRLPLEQFLLAKGISAEKVLEIEYTR AVVLQKEDEPSLHDDWVSAVDGSCPRFILTGCYDNLGRVWKAAGECTHILEGHGGAITSVSVVNSEGTDSVTVATASKDETLRLWKFDTEEHLDQPSKIR AFKILRGHNAPVQSVAAEASGSMICSGSWDCTINLWRTNESDTEGDLVSIKKRKVKNKAGESQLEGGALSTLVGHTQCVSSVYWPEPNTIYSASWDHSVR RWDVEMGKDLSNIFCGKALHCLHVGGEGSALIAAGGSDPILRVWDPRKPGTSAPIYQFSSHNSWISACKWHSESLFHLLSASYDGKLMLWDLRTAWPLAI IDSHEDKVLCADWWKGDSVISGGVDSKLRISSGVSVL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G15550			Transducin/WD40 repeat-like su...		Potri.017G093300 [exp]	0	1
AT5G22100			RNA cyclase family protein (.1...		Potri.009G016000 [exp]	1.00	0.9092
AT3G16810		APUM24	pumilio 24 (.1)		Potri.010G005600 [exp]	2.44	0.8824
AT4G26600			S-adenosyl-L-methionine-depend...		Potri.001G369600 [exp]	3.00	0.8813
AT5G67630			P-loop containing nucleoside t...		Potri.016G096800 [exp]	5.00	0.8753
AT5G14520			pescadillo-related (.1)		Potri.004G121400 [exp]	5.47	0.8735
AT4G04940			transducin family protein / WD...		Potri.006G078900 [exp]	5.65	0.8782
AT4G34910			P-loop containing nucleoside t...		Potri.007G021800 [exp]	6.48	0.8553
AT3G02650			Tetratricopeptide repeat (TPR)...		Potri.001G361500 [exp]	7.07	0.8318
AT2G34570		MEE21	maternal effect embryo arrest ...		Potri.004G197200 [exp]	7.48	0.8154
AT1G48920		ATNUC-L1, PARL1	PARALLEL 1, nucleolin like 1 (...		Potri.007G071100 [exp]	7.93	0.8458

Compare expression of checked genes

Potri.017G093300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.