Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39220 436 / 7e-154 alpha/beta-Hydrolases superfamily protein (.1) AT1G13820 419 / 3e-147 alpha/beta-Hydrolases superfamily protein (.1) AT4G36530 58 / 3e-09 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G09430 53 / 1e-07 alpha/beta-Hydrolases superfamily protein (.1) AT4G09900 44 / 0.0001 ATMES12 ARABIDOPSIS THALIANA METHYL ESTERASE 12, methyl esterase 12 (.1) AT5G19850 42 / 0.0004 alpha/beta-Hydrolases superfamily protein (.1) AT1G72620 42 / 0.0005 alpha/beta-Hydrolases superfamily protein (.1) AT1G78210 41 / 0.0007 alpha/beta-Hydrolases superfamily protein (.1) AT4G12830 41 / 0.001 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G120000 [exp] 630 / 0 AT5G39220 433 / 9e-153 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G158800 [exp] 456 / 6e-162 AT1G13820 489 / 4e-175 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G121000 [exp] 59 / 2e-09 AT4G36530 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.015G129500 [exp] 47 / 2e-05 AT4G25290 809 / 0.0 DNA photolyases;DNA photolyases (.1) Potri.001G313100 [exp] 46 / 2e-05 AT5G09430 466 / 7e-167 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G096900 [exp] 44 / 0.0001 AT1G26360 379 / 2e-129 ARABIDOPSIS THALIANA METHYL ESTERASE 13, methyl esterase 13 (.1) Potri.013G092900 [exp] 44 / 0.0002 AT3G10840 404 / 3e-137 alpha/beta-Hydrolases superfamily protein (.1) Potri.019G063900 [exp] 43 / 0.0003 AT5G38520 447 / 2e-157 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.006G219400 [exp] 42 / 0.0003 AT4G33180 329 / 3e-113 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032977 [exp] 429 / 9e-148 AT5G39220 366 / 2e-123 alpha/beta-Hydrolases superfamily protein (.1) Lus10036913 [exp] 418 / 1e-146 AT1G13820 466 / 5e-166 alpha/beta-Hydrolases superfamily protein (.1) Lus10037072 [exp] 341 / 1e-117 AT1G13820 367 / 2e-128 alpha/beta-Hydrolases superfamily protein (.1) Lus10028315 [exp] 59 / 3e-09 AT4G36530 538 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10031137 [exp] 55 / 7e-08 AT4G25290 778 / 0.0 DNA photolyases;DNA photolyases (.1) Lus10041529 [exp] 47 / 3e-05 AT5G41130 647 / 0.0 Esterase/lipase/thioesterase family protein (.1.2) Lus10041763 [exp] 44 / 0.0001 AT4G36530 484 / 6e-172 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10001210 [exp] 43 / 0.0003 AT4G02340 189 / 5e-58 alpha/beta-Hydrolases superfamily protein (.1) Lus10008266 [exp] 42 / 0.001 AT4G24140 582 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF12697 [poplar] [flax] Abhydrolase_6 Alpha/beta hydrolase family
Representative CDS sequence Show only first row Show all	>Potri.017G093500.1 pacid=42813471 polypeptide=Potri.017G093500.1.p locus=Potri.017G093500 ID=Potri.017G093500.1.v4.1 annot-version=v4.1 ATGAACACCGCTCTTAAGCTGGGGTCTCTACCCGTAATGGGAATCAATATGACCAAGAACTATGGAAGTTTGAAGGCTAGTAAAGTTAAAGTTTTTGCTG TTGATGGAGCTGGTGATGCTGAGTTTCCTTCATTTCTTCCAAAAGAGGTAGAGAAAATCAAAGACCCATTTGCTAGATCTTTGTCTAAAAGAATGAAGAG GTTACCTGTGCAGATTGGAATGTCAGAAAGTTGTATCATGAGCAGTTGTGTTAAACCACTGAGACAAAGTAACAAAACCAGTCCAGTGGTTCTTCTTCAT TGCTTTGACAGTTCTTGTTTAGAATGGAGATGCACGTATCCCTTACTTGAGGAGGCTGGTTTGGAAGCTTGGGCTGTTGATGTTCTTGGGTGGGGCTTTT CTGATTTAGAAACTCGGCCACCATGTGACGTAGCATCCAAGCGTCATCACCTTTATCAGCTTTGGAAGTCTTACATCAAAAGGCCAATGATATTAGTTGG ACCAAGTCTTGGCGCATCTGTTGCAATTGATTTTACAGTGCATTATCCAGAAGCTGTTGAAAAGCTGGTTTTGATCAACCCAAGTGTGTATGCTGAAGGC ACGGGAAATCTTGCGAAGTTACCAGAATTGGTAGCCTATGCTGGGGTTTCTTTCTTAAAGAGTCTCCCATTACGCTTTTATGCAAATATGGTGGCCTTCA ATGGCATTCCATTCTTTACAATCTTGGACTGGACTTGTGTTGGCCGGTTACATTGTTTGCTACCATGGTGGAAAGATGCAACTGTCAGTTTTATGTTGAG TGGGGGCTACAATGTTATTTCCCAGATAAAACAGGTAAAGCACAAAACCCTTATCATATGTGGCCAGCACGATCAGATTGTGAGCTACCAGCATGTAGTG AAATTGCACTCTGAACTATCCAATGCAATTATTCGAGAAGTATCTGATTCTGGCCATCTTCCTCACGTGGATAATCCCAAATGTGTTGCCAAATTGATTG CTGATTTTGCTCAAGGTGACGCTGATGTTAATGCCAAGAGCCAATTCTGTTTGGCTCAGTTAACGGCTTTACCTAGACAGTAA
AA sequence Show only first row Show all	>Potri.017G093500.1 pacid=42813471 polypeptide=Potri.017G093500.1.p locus=Potri.017G093500 ID=Potri.017G093500.1.v4.1 annot-version=v4.1 MNTALKLGSLPVMGINMTKNYGSLKASKVKVFAVDGAGDAEFPSFLPKEVEKIKDPFARSLSKRMKRLPVQIGMSESCIMSSCVKPLRQSNKTSPVVLLH CFDSSCLEWRCTYPLLEEAGLEAWAVDVLGWGFSDLETRPPCDVASKRHHLYQLWKSYIKRPMILVGPSLGASVAIDFTVHYPEAVEKLVLINPSVYAEG TGNLAKLPELVAYAGVSFLKSLPLRFYANMVAFNGIPFFTILDWTCVGRLHCLLPWWKDATVSFMLSGGYNVISQIKQVKHKTLIICGQHDQIVSYQHVV KLHSELSNAIIREVSDSGHLPHVDNPKCVAKLIADFAQGDADVNAKSQFCLAQLTALPRQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G39220			alpha/beta-Hydrolases superfam...		Potri.017G093500 [exp]	0	1
AT2G28580			Plant protein of unknown funct...		Potri.007G132300 [exp]	5.00	0.9001
AT5G46850			unknown protein		Potri.003G095200 [exp]	6.00	0.8995
AT1G64870			unknown protein		Potri.006G252800 [exp]	6.24	0.8981
AT4G10810			unknown protein		Potri.014G013600 [exp]	6.32	0.8769
AT5G24400		PGL3, EMB2024	6-PHOSPHOGLUCONOLACTONASE 3, E...		Potri.015G008401 [exp]	15.49	0.8633
AT3G22880		ARLIM15, ATDMC1	ARABIDOPSIS THALIANA DISRUPTIO...		Potri.008G158500 [exp]	15.58	0.8763
AT1G57790			F-box family protein (.1)		Potri.012G106800 [exp]	16.73	0.8897
AT1G61667			Protein of unknown function, D...		Potri.011G032600 [exp]	16.97	0.8496
AT5G65960			GTP binding (.1)		Potri.002G177100 [exp]	17.02	0.8866
AT5G17620			unknown protein		Potri.013G072300 [exp]	19.89	0.8854

Compare expression of checked genes

Potri.017G093500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.