Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G29390 443 / 2e-149 RIK RS2-interacting KH protein (.1) AT1G20920 48 / 2e-05 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G003600 [exp] 49 / 8e-06 AT1G20920 1201 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.005G257400 [exp] 48 / 2e-05 AT1G20920 1253 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015384 [exp] 416 / 1e-140 AT3G29390 418 / 9e-142 RS2-interacting KH protein (.1) Lus10032979 [exp] 306 / 1e-98 AT3G29390 306 / 2e-99 RS2-interacting KH protein (.1) Lus10035328 [exp] 48 / 1e-05 AT1G20920 293 / 3e-94 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10029986 [exp] 48 / 2e-05 AT1G20920 347 / 2e-109 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.017G093600.1 pacid=42813427 polypeptide=Potri.017G093600.1.p locus=Potri.017G093600 ID=Potri.017G093600.1.v4.1 annot-version=v4.1 ATGGTAGAGGAAAGCAGTAGTAGGATTCCTACAGATGATTCGACGGCAAACTCGGATACATCATCATCACAATCCAGGCAAAGGAGAAAGAGAAAGTGGG ATCAGCCTGCGGAGTCACTGGTTTCAGCTGGAGTTCCAGTATCTGATGCTGTACAATTAGGCAATGTGGGGTCTCTTGTTGGGATCTCGTTACCAGGGGC TGCTTCAGTTTCTGGTGCGCTTTTAACAAATCCACAAATTGCTATTGTTCCGCCTATGTTTCTGGTGCCTTCGATGCCACAAAATACTGCTGCTGTGGTC CCAAAACTAAATCAACCTAAGGTTCAGGATGAGTTAATAATAGCACGGGAGATTGTTATAAATGATGCAGAGTCCTCTGTTCGCTACAAGCTTACAAAGC GGCAGACACAGGAAGAAATTCAGAAATTCACTGGTGCTGTGGTGATAACTAGGGGCAAGTATCGTCCACCAAATGCACCGCCAGATGGTGAAAAGCCATT ATATCTTCACATATCCGCGGCTGCTCACTTAAAAGATACTGCAGAACGGATTTTGGCAGTTGATCGGGCAGCAGCCATGGTTGATGAAATGCTGAAACAG GGTCAGAGCTCACAGCCTGCTTCTTCCATTATACAAATGCCTGCAGTTAATGGAGTAAAGGCGCTAAGTACGTGTGTGTTTTTGGGCTTTGACACAGACC CAACATTGAATATTGCTGCTCGAATTCGCGGACCAAATGACCAGTACATAAGTCATATTATGAATGAAACAGGGGTTACAGTCGTACTAAGAGGGCGTGG TTCTGGAAACTGTGAAAGCCAGAGTACTGGAGAATCGCAGCAACCACTTCATTTATTTTTGTCTGCTAGTAATCCAAAAGGTCTTGAAGATGCAAAACGT TTATCTGAAAACCTTCTGGATACAATCAGTTTAGAGTGTGGTGCTTCCAGGGCTTCGTCATGTAAAGTTTATAATGCTGTCCCACCACCGCAGACATTAA CTGGAGCTCATGCTGCTGGGATTGAGCACAAACTAAATACAAGTGCAGTCACTGGATTGATGCTACCAACAATGAGCTCTACTCCACCTATTCCTGCTTC TTTGGTTTCAGTTTCCGGGGTTGCTACTGTCTGTTCCCAAGGGACTGTATCACAGTCTGGGGCAATGTTGAGCTGTGGGCAACCCCAGCCAAGTGTGGCT GGTTATTCCCAGCCTTTTGTAATGGGAGGAACGAGCTATAGTGGATATGGTGGTATATATCCTCAAGCCACACCTTTGCAACAAGTTGCCCAAGTCCTTA GGCAGCCACCTTCCCCCATCCCTTCCATAGTTTCTCCTACAACGTCTATAGCAAATGCAGCACCAAATTCAGGAATGAACTCTATTGCTGAAAAACGACC TACACAGAAGCGGAAGTTTCAGGAAGTACCAGTTGGTTCGAAGGGTCCTGCAAAACTTCATCAGGGATCAGAATTGTCCAAGTCTGGTAAATCGCTGCAG GCAGATTTGGGTGTTAGAAATATCTCAACTATGCCAGCTCCAAAAAAGTTGGTCCACCCATCATCCAATGGAATGCCACCCCCTCCTCCACGAGCCATGC CTCCACCCCCACCTCCACCAAAGTTCACTTCATCAACTCCAGCTGCAAGACTGCAAGACAAGAGCAATTGTTGGAATAAAACCATGTCTGATGCTGTTCC TGTTGTTTCAGATACTTTAGTCAAATTGATGGAATATGGCGAAGAAGATGACGATCCTGAGGATACCAGTGAAGAATCCCCAAATGGGAAGTCCAGTGTC GTGGCAGTTCGAAAACCATTTTGGGCTTTATGA
AA sequence Show only first row Show all	>Potri.017G093600.1 pacid=42813427 polypeptide=Potri.017G093600.1.p locus=Potri.017G093600 ID=Potri.017G093600.1.v4.1 annot-version=v4.1 MVEESSSRIPTDDSTANSDTSSSQSRQRRKRKWDQPAESLVSAGVPVSDAVQLGNVGSLVGISLPGAASVSGALLTNPQIAIVPPMFLVPSMPQNTAAVV PKLNQPKVQDELIIAREIVINDAESSVRYKLTKRQTQEEIQKFTGAVVITRGKYRPPNAPPDGEKPLYLHISAAAHLKDTAERILAVDRAAAMVDEMLKQ GQSSQPASSIIQMPAVNGVKALSTCVFLGFDTDPTLNIAARIRGPNDQYISHIMNETGVTVVLRGRGSGNCESQSTGESQQPLHLFLSASNPKGLEDAKR LSENLLDTISLECGASRASSCKVYNAVPPPQTLTGAHAAGIEHKLNTSAVTGLMLPTMSSTPPIPASLVSVSGVATVCSQGTVSQSGAMLSCGQPQPSVA GYSQPFVMGGTSYSGYGGIYPQATPLQQVAQVLRQPPSPIPSIVSPTTSIANAAPNSGMNSIAEKRPTQKRKFQEVPVGSKGPAKLHQGSELSKSGKSLQ ADLGVRNISTMPAPKKLVHPSSNGMPPPPPRAMPPPPPPPKFTSSTPAARLQDKSNCWNKTMSDAVPVVSDTLVKLMEYGEEDDDPEDTSEESPNGKSSV VAVRKPFWAL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G29390		RIK	RS2-interacting KH protein (.1...		Potri.017G093600 [exp]	0	1
AT4G35740		ATRECQ3, RECQL3	A. THALIANA RECQ HELICASE 3, D...		Potri.005G107400 [exp]	1.00	0.8619
					Potri.003G196200 [exp]	2.00	0.8132
AT1G24120		ARL1	ARG1-like 1 (.1)		Potri.008G193500 [exp]	3.74	0.7834	ARL1.3
					Potri.004G104301 [exp]	4.89	0.7963
AT3G04910		ATWNK1, ZIK4, W...	with no lysine (K) kinase 1 (....		Potri.013G036300 [exp]	6.48	0.7512
AT1G70620			cyclin-related (.1.2.3)		Potri.008G186900 [exp]	9.21	0.7988
AT3G06670			binding (.1.2)		Potri.008G107300 [exp]	9.79	0.8063
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Potri.006G036500 [exp]	10.09	0.7052
AT5G11700			unknown protein		Potri.018G058300 [exp]	10.19	0.7769
AT5G57250			Pentatricopeptide repeat (PPR)...		Potri.018G143800 [exp]	12.36	0.7693	CYP71.3

Compare expression of checked genes

Potri.017G093600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.