Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G29400 404 / 2e-132 ATEXO70E1 exocyst subunit exo70 family protein E1 (.1) AT5G61010 306 / 5e-95 ATEXO70E2 exocyst subunit exo70 family protein E2 (.1.2) AT5G50380 293 / 1e-89 ATEXO70F1 exocyst subunit exo70 family protein F1 (.1) AT1G72470 238 / 2e-69 ATEXO70D1 exocyst subunit exo70 family protein D1 (.1) AT3G14090 230 / 1e-66 ATEXO70D3 exocyst subunit exo70 family protein D3 (.1) AT1G54090 229 / 4e-66 ATEXO70D2 exocyst subunit exo70 family protein D2 (.1) AT2G28640 203 / 9e-57 ATEXO70H5 exocyst subunit exo70 family protein H5 (.1) AT3G09520 179 / 3e-48 ATEXO70H4 exocyst subunit exo70 family protein H4 (.1) AT5G59730 177 / 2e-47 ATEXO70H7 exocyst subunit exo70 family protein H7 (.1.2) AT1G07725 177 / 2e-47 ATEXO70H6 exocyst subunit exo70 family protein H6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G093833 [exp] 778 / 0 AT3G29400 318 / 1e-98 exocyst subunit exo70 family protein E1 (.1) Potri.017G093966 [exp] 685 / 0 AT3G29400 597 / 0.0 exocyst subunit exo70 family protein E1 (.1) Potri.015G058200 [exp] 437 / 3e-145 AT5G61010 585 / 0.0 exocyst subunit exo70 family protein E2 (.1.2) Potri.015G094800 [exp] 301 / 5e-93 AT5G50380 785 / 0.0 exocyst subunit exo70 family protein F1 (.1) Potri.012G097100 [exp] 298 / 1e-91 AT5G50380 754 / 0.0 exocyst subunit exo70 family protein F1 (.1) Potri.003G068700 [exp] 268 / 2e-80 AT1G72470 810 / 0.0 exocyst subunit exo70 family protein D1 (.1) Potri.001G166400 [exp] 266 / 5e-80 AT1G72470 822 / 0.0 exocyst subunit exo70 family protein D1 (.1) Potri.013G152900 [exp] 210 / 4e-59 AT5G58430 781 / 0.0 exocyst subunit exo70 family protein B1 (.1) Potri.006G214300 [exp] 202 / 1e-56 AT3G09520 622 / 0.0 exocyst subunit exo70 family protein H4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031956 [exp] 535 / 0 AT3G29400 581 / 0.0 exocyst subunit exo70 family protein E1 (.1) Lus10035146 [exp] 531 / 0 AT3G29400 579 / 0.0 exocyst subunit exo70 family protein E1 (.1) Lus10016764 [exp] 300 / 2e-92 AT5G50380 807 / 0.0 exocyst subunit exo70 family protein F1 (.1) Lus10022459 [exp] 284 / 5e-87 AT5G50380 749 / 0.0 exocyst subunit exo70 family protein F1 (.1) Lus10008126 [exp] 259 / 7e-77 AT1G72470 862 / 0.0 exocyst subunit exo70 family protein D1 (.1) Lus10013163 [exp] 248 / 5e-75 AT1G72470 740 / 0.0 exocyst subunit exo70 family protein D1 (.1) Lus10005436 [exp] 202 / 3e-56 AT5G59730 535 / 0.0 exocyst subunit exo70 family protein H7 (.1.2) Lus10015221 [exp] 199 / 4e-55 AT2G39380 533 / 0.0 exocyst subunit exo70 family protein H2 (.1) Lus10004917 [exp] 186 / 2e-50 AT5G59730 532 / 0.0 exocyst subunit exo70 family protein H7 (.1.2) Lus10024438 [exp] 184 / 9e-50 AT3G09520 634 / 0.0 exocyst subunit exo70 family protein H4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [poplar] [flax] Vps51 PF03081 [poplar] [flax] Exo70 Exo70 exocyst complex subunit
Representative CDS sequence Show only first row Show all	>Potri.017G093700.4 pacid=42813737 polypeptide=Potri.017G093700.4.p locus=Potri.017G093700 ID=Potri.017G093700.4.v4.1 annot-version=v4.1 ATGGTGATCATTGATGCGGCGAAACAGATTATGATGGCATTAAGGTCAAGAAAGAATCTTACAGATGATGAGAAGGAGATTCTGGGAGACCTTCATACCC AATTAACCACTGCAATAGCAATCAGCGAAAAAGAGGTTGATGAAATAAACAAGATTGAAGAAAGGCTAAATGTTATTCAGGGGAAGGTTATGTGTTGGGA AAGATATTGGCCTATGATCTGGGACTCGGGTCTTGATGAAGCTACTGAGTATCTAAATGCCGCTGACGAAGCCCGACAGGTGACTAAAAAACTGGAAATC TTGTGTATGACTGAAGATAGAAAAAAGGAGATGCTTCAGAGGGCTCGAAATCTTCTTCAAATCTCAATGGGAAGGCTTCAGGAGGAGTTCAAGCACATGC TTACTAAAAATAGACAACCCTTTGAGCCAAAACATGTGCCTGTTGTTTCAATTGCCGTCAATGCAGTCTCAAAAATCTCTCTTGACAATAAACTGGTTAG GGATTTGAAGCTAAGAAAAATCATTAACAGAAATTCAAAGGAATTCACCATTAATTTGGTTCAATACGATGTTATCCCTGAGCTCAGACGTATTGCGAAT GTGATGTCCATTTCTGGTTATGCTAATGAATGTTCTCTGGCATATATTAGCATTCAAAGGAGCGCTTTGGATGAATGTCTCCGCATTCTTGAAAGGGAGA AACTGAGAACTGAAGATGTGCTGAAACTGGATCAGGTAAGCTTAAAATCGAAGATCAAGAGAAGGATCCAGACTATGAAGATGTTTATGCGTGTCTATCT TGCTAGTGATAAACGGCTCTCTGAACAGATTTTCGGGGAACTTGGAACTGTTAATTTGGTTTCATTTACTGAGCCTTTAGTGCTTCAGCTATTGACCTAT TTTGGCGAAGCCATATCTACTGGTCCCGGAAATCCAGGAAAGTTGTTCCATTTACTAGACATGTATGAGGTCCTGGCAGGTCTTCTCCCATATTTAGATT CTTTGTACTCTGACAAAGCTATTTCTCAAGTAATAGTGGACGGTGATATGGTTCTAAGGGGATTGGCTGATTCTGTAAGGAAAACACTTGATGAGTTTGA GGATTCCATTATGACATACACAATGACAGAGCCTTTTGGAGCTGAAGGAATTCACCCACTCACAAAAAATGTCATGAATTACATCAGTGCTCTCACAGGC TACCACGAGACACTTGATTTTCTCCTCAATGACCATTGTGGAGAACACCCCATGCCAGCACCCTCTTGCATGAGTTCAGGTGTGGAAGAAGAGAACTTAA GTGGAGGCACATGCGATTTTTCCCCAATCGCTCGGCACTCTTTGTCGAATGATTCAATTCTAAAATGGCTCAGCAATGGCTCCTCGATGAGTCCATCTAC TAAAGGAGATAGCATAAGTGGAGGTACATGCAATCTATCCCCACTGGCTCTGCACTTTCGAGCATTTTCTTGTATTCTAGAATACAAGCTCTACAACAAG GCCAAGTTATTTAAAGATGCTTCTTTGAAGCACATATTCTTGATGAACAATATACATTACATGGCTCAAAAGATTAAGTATTCAGAACTTCAGTTTATAC TAGGAGCGGAGTGGATTCAAGAGCACGACTGGGAATTCCAACAGCATGTGAGGAACTATACGACAGTTACTTGGAGTCCAGTCCTCTCTTTATTGAAGGA TGAGGGGAATACCAATTCGTATGCTGTCTCGAAAGTCCATGTGGAGGAAAAGCTTCGGAGCTTTTATCTTGCTTTTGAAGAGGTCTGTGGGGCTCAGACA GCATGTTTTATCCCTGATGACCAGCTTCGTGAAGATTTACGAAATTCGACTTCCCTCAAAGTGATCCGTGCATATCAGAAATTTGTTGAACGACATACTG ATCACGTAAGCGACAAGCACATTAAGTACAGTGATGATTATTTACAGAATCGCTTGTTGCAACTCTTCGAGGGATCCCAACTTAAGATCATGGCATAA
AA sequence Show only first row Show all	>Potri.017G093700.4 pacid=42813737 polypeptide=Potri.017G093700.4.p locus=Potri.017G093700 ID=Potri.017G093700.4.v4.1 annot-version=v4.1 MVIIDAAKQIMMALRSRKNLTDDEKEILGDLHTQLTTAIAISEKEVDEINKIEERLNVIQGKVMCWERYWPMIWDSGLDEATEYLNAADEARQVTKKLEI LCMTEDRKKEMLQRARNLLQISMGRLQEEFKHMLTKNRQPFEPKHVPVVSIAVNAVSKISLDNKLVRDLKLRKIINRNSKEFTINLVQYDVIPELRRIAN VMSISGYANECSLAYISIQRSALDECLRILEREKLRTEDVLKLDQVSLKSKIKRRIQTMKMFMRVYLASDKRLSEQIFGELGTVNLVSFTEPLVLQLLTY FGEAISTGPGNPGKLFHLLDMYEVLAGLLPYLDSLYSDKAISQVIVDGDMVLRGLADSVRKTLDEFEDSIMTYTMTEPFGAEGIHPLTKNVMNYISALTG YHETLDFLLNDHCGEHPMPAPSCMSSGVEEENLSGGTCDFSPIARHSLSNDSILKWLSNGSSMSPSTKGDSISGGTCNLSPLALHFRAFSCILEYKLYNK AKLFKDASLKHIFLMNNIHYMAQKIKYSELQFILGAEWIQEHDWEFQQHVRNYTTVTWSPVLSLLKDEGNTNSYAVSKVHVEEKLRSFYLAFEEVCGAQT ACFIPDDQLREDLRNSTSLKVIRAYQKFVERHTDHVSDKHIKYSDDYLQNRLLQLFEGSQLKIMA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G29400		ATEXO70E1	exocyst subunit exo70 family p...		Potri.017G093700 [exp]	0	1
AT4G29050			Concanavalin A-like lectin pro...		Potri.003G196600 [exp]	1.00	0.9347
AT4G39955			alpha/beta-Hydrolases superfam...		Potri.005G074066 [exp]	2.23	0.8990
AT4G06536			SPla/RYanodine receptor (SPRY)...		Potri.014G025000 [exp]	2.44	0.8989
AT5G38210			Protein kinase family protein ...		Potri.017G118100 [exp]	2.82	0.9278
AT2G41180		SIB2	sigma factor binding protein 2...		Potri.013G043800 [exp]	2.82	0.8981
AT1G30755			Protein of unknown function (D...		Potri.002G021400 [exp]	3.46	0.9083
AT1G43910			P-loop containing nucleoside t...		Potri.007G019600 [exp]	4.89	0.8928
AT3G28450			Leucine-rich repeat protein ki...		Potri.001G349900 [exp]	5.29	0.9042
AT1G58420			Uncharacterised conserved prot...		Potri.007G006100 [exp]	6.48	0.8868
AT4G31420	C2H2ZnF		Zinc finger protein 622 (.1.2)		Potri.018G006300 [exp]	7.07	0.8670	Pt-FZF.1

Compare expression of checked genes

Potri.017G093700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.