Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G29400 318 / 2e-98 ATEXO70E1 exocyst subunit exo70 family protein E1 (.1) AT5G61010 154 / 2e-39 ATEXO70E2 exocyst subunit exo70 family protein E2 (.1.2) AT5G50380 147 / 1e-36 ATEXO70F1 exocyst subunit exo70 family protein F1 (.1) AT3G14090 126 / 4e-30 ATEXO70D3 exocyst subunit exo70 family protein D3 (.1) AT1G72470 125 / 6e-30 ATEXO70D1 exocyst subunit exo70 family protein D1 (.1) AT5G59730 125 / 7e-30 ATEXO70H7 exocyst subunit exo70 family protein H7 (.1.2) AT3G09520 124 / 2e-29 ATEXO70H4 exocyst subunit exo70 family protein H4 (.1) AT5G58430 124 / 3e-29 ATEXO70B1 exocyst subunit exo70 family protein B1 (.1) AT1G54090 123 / 4e-29 ATEXO70D2 exocyst subunit exo70 family protein D2 (.1) AT1G07000 121 / 1e-28 ATEXO70B2 exocyst subunit exo70 family protein B2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G093700 [exp] 772 / 0 AT3G29400 404 / 4e-132 exocyst subunit exo70 family protein E1 (.1) Potri.017G093966 [exp] 473 / 3e-158 AT3G29400 597 / 0.0 exocyst subunit exo70 family protein E1 (.1) Potri.015G058200 [exp] 263 / 2e-78 AT5G61010 585 / 0.0 exocyst subunit exo70 family protein E2 (.1.2) Potri.003G068700 [exp] 240 / 8e-70 AT1G72470 810 / 0.0 exocyst subunit exo70 family protein D1 (.1) Potri.001G166400 [exp] 229 / 9e-66 AT1G72470 822 / 0.0 exocyst subunit exo70 family protein D1 (.1) Potri.009G026900 [exp] 182 / 5e-49 AT5G59730 551 / 0.0 exocyst subunit exo70 family protein H7 (.1.2) Potri.001G234600 [exp] 165 / 4e-43 AT2G39380 540 / 0.0 exocyst subunit exo70 family protein H2 (.1) Potri.012G097100 [exp] 163 / 3e-42 AT5G50380 754 / 0.0 exocyst subunit exo70 family protein F1 (.1) Potri.017G093650 [exp] 147 / 7e-41 AT3G29400 129 / 8e-35 exocyst subunit exo70 family protein E1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031956 [exp] 486 / 3e-163 AT3G29400 581 / 0.0 exocyst subunit exo70 family protein E1 (.1) Lus10035146 [exp] 345 / 2e-108 AT3G29400 579 / 0.0 exocyst subunit exo70 family protein E1 (.1) Lus10008126 [exp] 233 / 6e-67 AT1G72470 862 / 0.0 exocyst subunit exo70 family protein D1 (.1) Lus10013163 [exp] 219 / 6e-64 AT1G72470 740 / 0.0 exocyst subunit exo70 family protein D1 (.1) Lus10016764 [exp] 171 / 8e-45 AT5G50380 807 / 0.0 exocyst subunit exo70 family protein F1 (.1) Lus10022459 [exp] 150 / 4e-38 AT5G50380 749 / 0.0 exocyst subunit exo70 family protein F1 (.1) Lus10005436 [exp] 123 / 7e-29 AT5G59730 535 / 0.0 exocyst subunit exo70 family protein H7 (.1.2) Lus10024438 [exp] 122 / 8e-29 AT3G09520 634 / 0.0 exocyst subunit exo70 family protein H4 (.1) Lus10004917 [exp] 122 / 1e-28 AT5G59730 532 / 0.0 exocyst subunit exo70 family protein H7 (.1.2) Lus10025291 [exp] 120 / 4e-28 AT3G09520 636 / 0.0 exocyst subunit exo70 family protein H4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [poplar] [flax] Vps51 PF03081 [poplar] [flax] Exo70 Exo70 exocyst complex subunit
Representative CDS sequence Show only first row Show all	>Potri.017G093833.1 pacid=42813661 polypeptide=Potri.017G093833.1.p locus=Potri.017G093833 ID=Potri.017G093833.1.v4.1 annot-version=v4.1 ATGGGGGACCCTGACATGGTGATTCCAGGATTAGAAGGGGAAGGAAACCTTATTGCTGCGGCGAAGCAAACTATGATGGCATTAAGATCGGCGAAAGATC TTACAGATGACGAGATGGAGATTTTGGGAGACCTTCATACCCAATTAACCACCACAATCACAATCGGCGAAAGAAAGGCTGATGAAAAAAACAAGATTGA AAAAAGGCTAAATGTTATTCAGGAGGAGATTATGAGTTGGGAAAGATATTGGCCTATGATCTGGGACTCGCATCTTGATCAAGCTACTGCGTATCTGAAT GCTGCTGGCGAAGTCCGAGAGCTGAATGAAAGACTGGAGACTTTGTGTCGGAATGATGACAGCAAAAAGAAGATGCTACAGAGGGCTCAAAAAGTTCTTC AACTGGCAATGAAAAGGCTTGAGGTGGTGTTCAAGCACATGCTTGTTGAAAACAGACAACCCTTTGAGCCAAACCATGCTTCTTTTTTCTCAAGTGCTGC CGATAGAGTCTCAAAAATCTCTCCTGGGGATTACTTGGTTGAGAACTCAGATGATGGATGTATTTTTAACAGAAATTCAGAGGAGTTCATCATTGATTTG GTTCAATATGATGCCATTTCTGAGCTCAGACGAATTGCAAATTTGATGTTCATTTCTGGTTATGGTGATGAATGTTCTCTGGCATATATTAGCCTTCGAA GAGATGCCTGGAATGAGTATCTCTTCAATCTTGAAAAGGAGAAACCGAGAATTGAAGATGTGCTATTCTCGAAGTGGGACAGCTTCAAATCAGAGTTGGA CAGCATAAAATCGAAGAACAAGAGATGGATTCAGAATATGAAGATCTTTGTACGTGTCTATCTTGCTAGTGAGAAATGGCTCTCTGGACAGGTTTTTGGG GAACTCAGAACGGTTAATTTGGTTTCTTTGCCTGGGGATTTAATCTTGCTGCTATTGAAGTATTTTGGGAAAGACACATCTATTCACCCCTTAAATCCAG AAAAACTGTTCCATAATCTTGACATATACGAGATCCTGGCTGGTCTTCATCCAAATATAGATTCTTTGTATTCTGACAAGGATATTTCTCGAGTTAGAGT TAACAGTGATGAGGTTCTAAGGGGATTGGCTGACTCTGTGAGGCGAACACTTCATGAATTTCAGAATTACATTGTTACATACATGACGAGAGATTCTTTT GCGAACATTCCATCTGAAGGAATTCACCCTCTCACCAAATATGTATTGAAGTACATCAGTACTCTCGCTGACTACAGCGAGACCCTTAATTTTCTCCTCA AGGACTATGATGGGGAAGATCCCATGTTAGCATCCCCTTGCAAGAGTTCAGATGTGGAAGAAGAGAGTGGAGGCACATGCGACTTTTCCCCAATCGCTCA CTCCTTTCGATCAAATGCCTCAATTCTAAAATGGCTTTACAGTGGCTCCCCGATGAGTTCAGCTATGCAAGAAGAGAGCATAAGTGGAGATACATCCAAC TTTTCCCCAATTGCTTTCCAACTGGGATCGGATGCTTCATTTCTAAAATGGCTATCCAATTGCTTCCTGCTAAGTTCGGCTACAGAGGAAGAGAGCATAA ATGGAGGCACATGCGACATTTCCCCAGTGGCTCTCTACTTTCGAGTGGTTGCTTCCATTTTAGAATACGAGCTCTACAACAGGGCCAAGTCATTTAAAGA TGCTTCTTTACAGCACATATTCTTGATGAACAACAGACATTACGTGGCTGAAAAGGTGAAGAATTCAAAACTTCAGTTCATACTTGGAGAGGAATGGAGA CGAGAGCACACCAAGAAATTCCAACAGCTTGTGTTGAACTATGAGAGAATTACTTGGAATCCAATCCACAATATACTGAATGACGAGGGGTCCGATTCAA ATTTTGTCTCGAAAGCTCTTCTCCGGGAAAGGTTGCGAAGCTTTTATCTTGCTTTTGAAGAGGTTTGCAGGACCCAAACAACATGTTCTATCCCTGATAC TCAACTTCGAGAAGATTTACGCAATTCAGCTCCCCTCAAAGTGATCCATGCATATAAGAAATTTGTTGAACTACATGCCAATCACGTAAGTAGTAAACTC ATAAGTAGCAAGCTCATTAAGTACAGCAATTTACAAAATCGCTTATTGCATCTCTTTGAAGGCTCAAAATTAGGATAA
AA sequence Show only first row Show all	>Potri.017G093833.1 pacid=42813661 polypeptide=Potri.017G093833.1.p locus=Potri.017G093833 ID=Potri.017G093833.1.v4.1 annot-version=v4.1 MGDPDMVIPGLEGEGNLIAAAKQTMMALRSAKDLTDDEMEILGDLHTQLTTTITIGERKADEKNKIEKRLNVIQEEIMSWERYWPMIWDSHLDQATAYLN AAGEVRELNERLETLCRNDDSKKKMLQRAQKVLQLAMKRLEVVFKHMLVENRQPFEPNHASFFSSAADRVSKISPGDYLVENSDDGCIFNRNSEEFIIDL VQYDAISELRRIANLMFISGYGDECSLAYISLRRDAWNEYLFNLEKEKPRIEDVLFSKWDSFKSELDSIKSKNKRWIQNMKIFVRVYLASEKWLSGQVFG ELRTVNLVSLPGDLILLLLKYFGKDTSIHPLNPEKLFHNLDIYEILAGLHPNIDSLYSDKDISRVRVNSDEVLRGLADSVRRTLHEFQNYIVTYMTRDSF ANIPSEGIHPLTKYVLKYISTLADYSETLNFLLKDYDGEDPMLASPCKSSDVEEESGGTCDFSPIAHSFRSNASILKWLYSGSPMSSAMQEESISGDTSN FSPIAFQLGSDASFLKWLSNCFLLSSATEEESINGGTCDISPVALYFRVVASILEYELYNRAKSFKDASLQHIFLMNNRHYVAEKVKNSKLQFILGEEWR REHTKKFQQLVLNYERITWNPIHNILNDEGSDSNFVSKALLRERLRSFYLAFEEVCRTQTTCSIPDTQLREDLRNSAPLKVIHAYKKFVELHANHVSSKL ISSKLIKYSNLQNRLLHLFEGSKLG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G29400		ATEXO70E1	exocyst subunit exo70 family p...		Potri.017G093833 [exp]	0	1
AT2G18700		ATTPSB, ATTPS11	TREHALOSE-6-PHOSPHATE SYNTHASE...		Potri.018G097700 [exp]	3.46	0.7874
AT3G22260			Cysteine proteinases superfami...		Potri.016G019700 [exp]	5.00	0.7871
AT1G05870			Protein of unknown function (D...		Potri.007G126700 [exp]	6.00	0.7595
AT4G16260			Glycosyl hydrolase superfamily...		Potri.010G142800 [exp]	6.48	0.7823	HGN1.1
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Potri.009G142150 [exp]	7.93	0.7881
AT5G36930			Disease resistance protein (TI...		Potri.003G084366 [exp]	9.94	0.6691
AT5G24430			Calcium-dependent protein kina...		Potri.012G023300 [exp]	10.00	0.8032	CRK4
AT1G14370		Kin1, PBL2, APK...	PBS1-like 2, kinase 1, protein...		Potri.009G020700 [exp]	13.56	0.7891
AT3G16770	AP2_ERF	RAP2.03, ATEBP,...	RELATED TO AP2 3, ETHYLENE RES...		Potri.010G006800 [exp]	21.02	0.7213	RAP2.3,ERF34
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Potri.002G156300 [exp]	21.77	0.7852

Compare expression of checked genes

Potri.017G093833 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.