Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G29400 597 / 0 ATEXO70E1 exocyst subunit exo70 family protein E1 (.1) AT5G61010 454 / 4e-152 ATEXO70E2 exocyst subunit exo70 family protein E2 (.1.2) AT5G50380 411 / 5e-135 ATEXO70F1 exocyst subunit exo70 family protein F1 (.1) AT1G72470 356 / 2e-114 ATEXO70D1 exocyst subunit exo70 family protein D1 (.1) AT3G14090 355 / 5e-114 ATEXO70D3 exocyst subunit exo70 family protein D3 (.1) AT1G54090 348 / 2e-111 ATEXO70D2 exocyst subunit exo70 family protein D2 (.1) AT5G58430 309 / 2e-96 ATEXO70B1 exocyst subunit exo70 family protein B1 (.1) AT1G07000 292 / 3e-90 ATEXO70B2 exocyst subunit exo70 family protein B2 (.1) AT1G07725 278 / 8e-85 ATEXO70H6 exocyst subunit exo70 family protein H6 (.1) AT5G52340 271 / 4e-82 ATEXO70A2 exocyst subunit exo70 family protein A2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G093700 [exp] 661 / 0 AT3G29400 404 / 4e-132 exocyst subunit exo70 family protein E1 (.1) Potri.015G058200 [exp] 587 / 0 AT5G61010 585 / 0.0 exocyst subunit exo70 family protein E2 (.1.2) Potri.017G093833 [exp] 444 / 2e-147 AT3G29400 318 / 1e-98 exocyst subunit exo70 family protein E1 (.1) Potri.015G094800 [exp] 437 / 1e-145 AT5G50380 785 / 0.0 exocyst subunit exo70 family protein F1 (.1) Potri.012G097100 [exp] 429 / 4e-142 AT5G50380 754 / 0.0 exocyst subunit exo70 family protein F1 (.1) Potri.001G166400 [exp] 363 / 3e-117 AT1G72470 822 / 0.0 exocyst subunit exo70 family protein D1 (.1) Potri.003G068700 [exp] 362 / 1e-116 AT1G72470 810 / 0.0 exocyst subunit exo70 family protein D1 (.1) Potri.019G124000 [exp] 314 / 3e-98 AT5G58430 726 / 0.0 exocyst subunit exo70 family protein B1 (.1) Potri.013G152900 [exp] 313 / 5e-98 AT5G58430 781 / 0.0 exocyst subunit exo70 family protein B1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031956 [exp] 848 / 0 AT3G29400 581 / 0.0 exocyst subunit exo70 family protein E1 (.1) Lus10035146 [exp] 837 / 0 AT3G29400 579 / 0.0 exocyst subunit exo70 family protein E1 (.1) Lus10016764 [exp] 417 / 1e-137 AT5G50380 807 / 0.0 exocyst subunit exo70 family protein F1 (.1) Lus10022459 [exp] 393 / 4e-129 AT5G50380 749 / 0.0 exocyst subunit exo70 family protein F1 (.1) Lus10008126 [exp] 372 / 4e-120 AT1G72470 862 / 0.0 exocyst subunit exo70 family protein D1 (.1) Lus10013163 [exp] 343 / 7e-112 AT1G72470 740 / 0.0 exocyst subunit exo70 family protein D1 (.1) Lus10015221 [exp] 286 / 3e-87 AT2G39380 533 / 0.0 exocyst subunit exo70 family protein H2 (.1) Lus10004917 [exp] 275 / 2e-83 AT5G59730 532 / 0.0 exocyst subunit exo70 family protein H7 (.1.2) Lus10005436 [exp] 275 / 3e-83 AT5G59730 535 / 0.0 exocyst subunit exo70 family protein H7 (.1.2) Lus10043432 [exp] 268 / 9e-81 AT5G03540 1004 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [poplar] [flax] Vps51 PF03081 [poplar] [flax] Exo70 Exo70 exocyst complex subunit
Representative CDS sequence Show only first row Show all	>Potri.017G093966.1 pacid=42814230 polypeptide=Potri.017G093966.1.p locus=Potri.017G093966 ID=Potri.017G093966.1.v4.1 annot-version=v4.1 ATGGGGGAGTATGACGCAGCGGTTCCTGAATTAGAAGGAGAAGAAAACTTAATTGCTGCTGCAAAACAGATTGTGAGGGCACTAGGGTCAAAAAGGAACC TCACAGATGATGCGAAGAAGATCTTGGCAGAGCTTGGCACCCAATTGACTACCATAACCACCATCAGTGAAAATGAGGTTGATGAAATAAGTGATGATGA AGGCAGGCTAAATGTTAACCAGGAGAAGATTATGATCTGGGACACAGATCAGTCTATGATCTGGGACTTGGGTCCCAATGAAGCTAATGAGTATATAAAT TCTGCTGATGAAGTACGAAAATTGACAGAAAAGCTGGAGGCTATGTGCTTGAAAGATGATGGAGAAAAGGAGCTGCTACGGAGGGCGCATGATGTTCTTC AAATCGCAATGGCAAGGCTTGAGGAAGAGTTTAAGCATATGCTCATTCAAAACAGGCAACCATTTGAGCCAGAGCATATGTCTTTTCGTTCAAGTGAAGA GGATGCTGGCTCAGTAGCTTCTCTTGGGGATGAATCATTCGAGGAATCTCAGCATAGAGATAGTGTTAGCAGAAATTCAGAGGAATATATTGTTGATTTA GTCCATCCTTACACGATTCCTGAGCTCAGATGCATTGCAAATTTGATGTTCATTTCTGGTTATGGTCATGAATGTTCCCAGGCATATGTTAGTGTTCGAC GGGATGCCTTGGATGAGTTTCTCCTTATTCTTGAAATCGAGAAACTGAGCATTGAAGATGTGCTGAGATTGGAGTGGGGCAGCTTAAATTCCAAGATCAA GAGATGGGTTCGGACTATGAAGATCTTTGTGCGGGTCTATCTTGCTAGTGAGAAATGTCTATCTGAACAGATTTTTGGGGATCTGGGAACAGTTAATTTG GTTTCTTTTGCTGAGGTTTCAAAGGCTTCAATGCTGCGGCTTTTAAATTTTGGTGAAGCTGTATCTATTGGTCCCCATAAACCAGAAAAGCTGTTTCCTA TACTTGATATGTATGAGGTCCTAGCAGATCTTCTTCCAGACATAGATTCCTTATATGCAGATGAGGCTGGTGCTCGTGTTAGAATTGACTGTCGAGAAGT TCTAAGGAGATTGGGGGACTCTGTAAGGGCAGCATTTCTCGAATTTGAAAATGCTATTTCAACAAGCACCTCAACAAACCCTATTGCAGGAGGTGGAATT CATCCCCTCACCAAGTATGTTATGAATTACCTCAATGCTCTCACTGGCTACCGGGAAACTCTCAATTTTCTCCTCAAGGACCAAGATGGAGAGGATACCA TGTCATTGTCCCCTGACATTAATCCATCTACAGAAGAAGAGAACGCTAGAGATGGTGCATGCGATGGTTCACCACTGGCGCTCCACTTCCGATCAGTTGC TTCAATTCTAGAATGCAATCTTGATGACAAGGCCAAGCTATATAGAGATGCTTCTTTGCAGCACATATTCTTGATGAACAACATTCATTACATGGCTCAA AAAGTTGTGAATTCGAATCTTCAGTCTATACTTGGAGATGGGTGGATTCGAAAGCACAACTGGAAATTCCAGCAGCATGAGATGAACTATGAAAGAAATA CCTGGAGTTCTATCCTCGCTATACTGAAGGAAGAGGGGAATTCCAATTCTTCAAGAACTCTTCTCAAGGAAAGGTTTCGGAATTTTTATACCGCTTTTGA GGAGGTTTACAGGACGCAGACAGCGTGGTCAATCCCAAATGGTCATCTACGAGAAGATTTGCGAATCTCAACATCCCTCAAGGTGATCCAAGCTTACCGG ACATTTGTCGGAAGACATACAAATCAAATTAGTGACAAGCACATCAAGTACAGTGCAGATGATTTACAGAATTACTTGTTGGATCTCTTCGAGGGGTCTC AAAGATCATTGCACAATCCCCACAGGAGATCATAG
AA sequence Show only first row Show all	>Potri.017G093966.1 pacid=42814230 polypeptide=Potri.017G093966.1.p locus=Potri.017G093966 ID=Potri.017G093966.1.v4.1 annot-version=v4.1 MGEYDAAVPELEGEENLIAAAKQIVRALGSKRNLTDDAKKILAELGTQLTTITTISENEVDEISDDEGRLNVNQEKIMIWDTDQSMIWDLGPNEANEYIN SADEVRKLTEKLEAMCLKDDGEKELLRRAHDVLQIAMARLEEEFKHMLIQNRQPFEPEHMSFRSSEEDAGSVASLGDESFEESQHRDSVSRNSEEYIVDL VHPYTIPELRCIANLMFISGYGHECSQAYVSVRRDALDEFLLILEIEKLSIEDVLRLEWGSLNSKIKRWVRTMKIFVRVYLASEKCLSEQIFGDLGTVNL VSFAEVSKASMLRLLNFGEAVSIGPHKPEKLFPILDMYEVLADLLPDIDSLYADEAGARVRIDCREVLRRLGDSVRAAFLEFENAISTSTSTNPIAGGGI HPLTKYVMNYLNALTGYRETLNFLLKDQDGEDTMSLSPDINPSTEEENARDGACDGSPLALHFRSVASILECNLDDKAKLYRDASLQHIFLMNNIHYMAQ KVVNSNLQSILGDGWIRKHNWKFQQHEMNYERNTWSSILAILKEEGNSNSSRTLLKERFRNFYTAFEEVYRTQTAWSIPNGHLREDLRISTSLKVIQAYR TFVGRHTNQISDKHIKYSADDLQNYLLDLFEGSQRSLHNPHRRS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G29400		ATEXO70E1	exocyst subunit exo70 family p...		Potri.017G093966 [exp]	0	1
AT5G10490		MSL2	MSCS-like 2 (.1.2.3)		Potri.007G011100 [exp]	7.87	0.8894
AT1G21380			Target of Myb protein 1 (.1)		Potri.002G075500 [exp]	9.38	0.8538
AT5G48380		BIR1	BAK1-interacting receptor-like...		Potri.010G177900 [exp]	11.83	0.8397
AT5G46410		SSP4	SCP1-like small phosphatase 4 ...		Potri.001G353700 [exp]	12.00	0.8760
AT5G66850		MAPKKK5	mitogen-activated protein kina...		Potri.014G035500 [exp]	13.52	0.8776
AT1G78600	CO	BBX22, DBB3, ST...	SALT TOLERANCE HOMOLOG 3, DOUB...		Potri.011G105400 [exp]	13.56	0.8436
AT4G30080	ARF	ARF16	auxin response factor 16 (.1)		Potri.016G090300 [exp]	14.49	0.8489
AT3G09830			Protein kinase superfamily pro...		Potri.006G126000 [exp]	15.65	0.8718
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Potri.009G109400 [exp]	16.73	0.8609
AT2G33490			hydroxyproline-rich glycoprote...		Potri.003G166300 [exp]	16.97	0.8306

Compare expression of checked genes

Potri.017G093966 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.