Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39200 70 / 4e-14 unknown protein AT3G02125 69 / 3e-13 unknown protein AT2G03630 68 / 4e-13 unknown protein AT1G74220 52 / 2e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G120400 [exp] 315 / 4e-108 AT5G39200 68 / 1e-13 unknown protein Potri.010G158000 [exp] 105 / 2e-25 AT2G03630 108 / 7e-27 unknown protein Potri.008G096300 [exp] 84 / 5e-18 AT2G03630 91 / 2e-20 unknown protein Potri.015G057200 [exp] 69 / 7e-13 AT1G74220 77 / 9e-16 unknown protein Potri.012G061700 [exp] 65 / 1e-11 AT1G74220 91 / 1e-20 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030710 [exp] 89 / 4e-20 AT5G39200 71 / 3e-14 unknown protein Lus10013196 [exp] 89 / 6e-20 AT3G02125 67 / 5e-13 unknown protein Lus10029645 [exp] 86 / 3e-19 AT2G03630 62 / 4e-11 unknown protein Lus10032983 [exp] 73 / 1e-14 AT3G02125 59 / 6e-10 unknown protein Lus10021153 [exp] 70 / 4e-13 AT5G08020 884 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10037082 [exp] 67 / 3e-12 AT2G03630 82 / 2e-17 unknown protein Lus10036900 [exp] 66 / 1e-11 AT2G03630 82 / 3e-17 unknown protein Lus10026665 [exp] 61 / 3e-10 AT2G03630 73 / 2e-14 unknown protein Lus10004647 [exp] 57 / 4e-09 AT2G03630 62 / 6e-11 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.017G094300.2 pacid=42814065 polypeptide=Potri.017G094300.2.p locus=Potri.017G094300 ID=Potri.017G094300.2.v4.1 annot-version=v4.1 ATGACTGACGAAAAACCTATTCTTGCTCTCGAAAGTTCACGTTCCTCTGCATCCGATTCTTCATCAAGATCTAGTGAGGTTGAAAATGATATTCCTGCCA GTCCCTTTATCCAATCAAAACAAGCAGATGTTGGGTTAGCACAAGGACCGATACTTCCAGCAGATGTTGAATCATCACAAGGATCAGTATTTCCAGCAGA AGTTCCCAGCCACAATCCTGTTATCAACATACAAGTATTGCCCCCACCATCACCTCAACTGCATGTGATGGGACAACCTGGAGGGTACGATCCAAATAGG ATCCCATCATCCATTTTTGCTAAGCCTAGTAATCCTGCAGAATGGAGCGTTGCTTCTAATGATTCATTGTTCAGTATTTACATGGGGAATGGTAGCTTCT CAAGAGATCATGCTTTCATGTTGTATAAATCGGGAGAACTCCCCAGGTTTGATGAGACAGGCAATGCTTCAACCAGTTTGAGCCCTGTCATTGAAGTAGA GAACAATGATAGAAAGAATGAGGATATATCAATAGACATAAAAGTGAAGGAAGAGGAATCAACTGATTCTGAAGAAGAGGAATCTGAATCAACAGCTGAG ATCAGACCGACAAAGGAGGTTCCGGGTGCAACAGAGAAAATTAGTAATTGTCAGGAAAAGATGCATCTTGTTGAGGAGATTCGAGTTTCCTTCTCCAGCA GTAACAGATCATTTCAGTTCCCGTTATTGGACGCTACCTCAGGAAGAAGTTCTTCTTTTAATGAGGTGATGAAGAAGCATTCCTCGGAGAAGCACTTGGA ACAGGAGTCACAGCCAGCAGAAACCCCTGGAACAACCCAAAAGGCTGAGGGGAATAGTTGGTTTCCTTGCTTCTCTTGCTGCTCACATGGCTGTTGA
AA sequence Show only first row Show all	>Potri.017G094300.2 pacid=42814065 polypeptide=Potri.017G094300.2.p locus=Potri.017G094300 ID=Potri.017G094300.2.v4.1 annot-version=v4.1 MTDEKPILALESSRSSASDSSSRSSEVENDIPASPFIQSKQADVGLAQGPILPADVESSQGSVFPAEVPSHNPVINIQVLPPPSPQLHVMGQPGGYDPNR IPSSIFAKPSNPAEWSVASNDSLFSIYMGNGSFSRDHAFMLYKSGELPRFDETGNASTSLSPVIEVENNDRKNEDISIDIKVKEEESTDSEEEESESTAE IRPTKEVPGATEKISNCQEKMHLVEEIRVSFSSSNRSFQFPLLDATSGRSSSFNEVMKKHSSEKHLEQESQPAETPGTTQKAEGNSWFPCFSCCSHGC

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G39200			unknown protein		Potri.017G094300 [exp]	0	1
					Potri.018G036850 [exp]	1.41	0.7061
AT3G26610			Pectin lyase-like superfamily ...		Potri.010G044001 [exp]	6.00	0.5494
AT3G20530			Protein kinase superfamily pro...		Potri.001G421400 [exp]	9.79	0.5418
AT2G37770		ChlAKR, AKR4C9	Chloroplastic aldo-keto reduct...		Potri.006G090501 [exp]	27.42	0.4749
AT2G40410			Staphylococcal nuclease homolo...		Potri.010G182500 [exp]	32.95	0.5414
AT3G26750			unknown protein		Potri.007G019800 [exp]	50.98	0.4557
AT2G47270	bHLH	bHLH151, UPB1	UPBEAT1, sequence-specific DNA...		Potri.002G193300 [exp]	69.13	0.4398
AT2G47680	C3HZnF		zinc finger (CCCH type) helica...		Potri.002G204750 [exp]	72.60	0.4585
					Potri.001G150101 [exp]	102.66	0.4026
AT1G57775			Protein of unknown function (D...		Potri.004G109666 [exp]	110.41	0.3753

Compare expression of checked genes

Potri.017G094300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.