Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02130 1405 / 0 TOAD2, RPK2, CLI1 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) AT1G69270 508 / 2e-168 RPK1 receptor-like protein kinase 1 (.1) AT5G63930 399 / 2e-120 Leucine-rich repeat protein kinase family protein (.1) AT1G73080 397 / 1e-119 ATPEPR1, PEPR1 PEP1 receptor 1 (.1) AT2G33170 393 / 2e-118 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT3G49670 387 / 3e-117 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G65700 358 / 1e-106 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT4G20270 348 / 5e-103 BAM3 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) AT5G44700 351 / 3e-102 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT5G62230 344 / 1e-101 ERL1 ERECTA-like 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G120500 [exp] 1899 / 0 AT3G02130 1375 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Potri.008G096400 [exp] 1214 / 0 AT3G02130 1140 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Potri.014G144600 [exp] 799 / 0 AT3G02130 785 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Potri.008G009300 [exp] 401 / 3e-121 AT1G73080 1064 / 0.0 PEP1 receptor 1 (.1) Potri.008G007600 [exp] 390 / 6e-118 AT1G73080 981 / 0.0 PEP1 receptor 1 (.1) Potri.001G053400 [exp] 379 / 4e-113 AT2G33170 1311 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.011G164800 [exp] 362 / 3e-107 AT5G56040 1435 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.010G101100 [exp] 352 / 3e-103 AT2G01950 1510 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Potri.005G198000 [exp] 346 / 2e-101 AT1G34110 1381 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007206 [exp] 959 / 0 AT3G02130 964 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Lus10010087 [exp] 951 / 0 AT3G02130 962 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Lus10037083 [exp] 556 / 0 AT3G02130 569 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Lus10036899 [exp] 548 / 0 AT3G02130 559 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Lus10004646 [exp] 546 / 0 AT3G02130 552 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Lus10031976 [exp] 530 / 1e-174 AT3G02130 531 / 2e-175 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Lus10026666 [exp] 501 / 5e-164 AT3G02130 555 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Lus10035126 [exp] 413 / 5e-128 AT3G02130 450 / 4e-142 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Lus10036242 [exp] 366 / 3e-109 AT4G20270 1248 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Lus10039030 [exp] 357 / 6e-105 AT1G73080 1095 / 0.0 PEP1 receptor 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.017G094400.1 pacid=42814162 polypeptide=Potri.017G094400.1.p locus=Potri.017G094400 ID=Potri.017G094400.1.v4.1 annot-version=v4.1 ATGGGTTCCTCTTATTTTCTTTCTTCAGTTATCAAGTGGCAATCTTTCACAAAACTGAAGCTTTTCTCTCTCTTCTGTGCCTTCTCTCTGTCACTAAACG GCGTCGCTTCTTTTGATTCTGACAAATCTGTGCTGTTACAGTTCAAGAACTCAGTCTCTGATCCTTCAGGGCTTATCTCCGGCTGGAATCTGATCAGCAC CAACCACTGTCACTGGAACGGCGTGTCCTGTGATGCTAATTCGCGTGTCGTTTCGCTTAATATCACTGGAAATGGAAACTACAGAGGTAAGAAAAGTGGA GGTGGAGGTGCTATTTTGTGTTCTGGTGATTCTATTGAGCTTTCACTGTACGGGTTTGGGATTAGGAGAGATTGTAAAGGTAGTAAGGGAATTTTAATGG GAAAGTTGGTGCCTTTGATTGCTAGGTTAAGTGAACTTAGGGTTTTATCATTGCCCTTTAATGGGTTTCTCGGGTTGATACCGAGTGAAATATGGGGCAT GGAGAAGTTAGAGGTTCTTGATCTGGAGGGTAATTTGGTATCTGGGTCGTTGCCGGTTTCATTTTCCGGGTTAAGGAACTTGAGGGTTTTGAATTTAGGG TTTAACAGGATAGAAGGAGAGATACCGGATTCACTTTCTCGCTGTGATGGTTTGGAGATCTTGAATATAGCTGGTAATCGTATTAACGGGACAATTCCAG GGTTTGCTGGTCGGTTTAAGGGTGTGTATTTGTCGTTGAATCAGCTTGGTGGCTCACTGCCTGAGGATTTCGGATATAATTGTGAGAAACTTGAGCATTT AGATTTATCTGGGAATTTCTTGGTTGGAGGGATTCCTAGTAATTTAGGGAATTGTGGGAATTTGAGGACATTGTTGTTGTATTCAAATATGTTTGAAGAA ATTATTCCACGTGAACTGGGTAAGCTTGGGAAGCTAGAAGTGTTGGATGTGTCAAGGAATAGTCTTAGCGGGTCGGTACCCCCTGAGCTTGGAAATTGCT CTGCTTTGTCTGTGCTTGTGCTTTCGAATATGTTTGATCCGTATCAGGATGTTAATGGTACGAGAGGGAACGGTTTGTTGGATCATTTGAGCTCTATGGA TGAAGATTTCAATTTTTTTCAAGGGGGTATTCCTGCAGATGTCATGACTCTTCCGAAACTGAGGATGCTGTGGGCACCAAGCGCAACCCTTGGCGGCATG TTGCTGAGCAACTGGGATTCCTGTGATAGCTTGGAAATGATCAATTTGTCTCACAACTTCTTCAAAGGAGAAATCCCTCATGGGTTCAGTCGCTGCAATA AGCTGCGGTATCTGGATTTGAGCTCCAATGGGCTCTATGGTGAACTTCTTGAGGAGTTTCGAGTTCCTTGTATGACTGTTTTTGATGTTAGTGGAAATGC ATTGTCAGGTTCCATCCCCAGTTTCTATAGCAGCAGTTGCCCTCCTGTTCCTTCCACAATTGAGTATCCCTTAAATATTTATGACCCGTCATCTGCCTAT ATATCATTTTTTGCATATAAAGCTAAGGCAGGAAGTCCTACTATGTCACTTGGAAGAAATGGTGAAATCTCAGTTTTTCATAACTTTGGGGACAACAACT TTACTGGTACTCTCCAGTCCCTTCCTATTTCCCCGGTAAGATTAGGAAAGCAAACTGCTTACACATTTTTGGCTGGAGACAACAAGCTCAGCGGGCCATT TCCAGGGATCTTGTTTGAGAATTGTGATGGATTGAACATGATGATTGTCAATGTTAGCAATAATAGAATGTCTGGTCAGATTCCGGCAAATATGGGTCCA ATGTGCAGATCACTCAAGCTTCTGGATGCATCTAAGAATCAGATTGCTGGGACCATTCCACCAAGTGTTGGCGAATTAGTTTCTCTTGTTTATCTTGACA TGAGTTGGAACCTTTTGCAAGGCCAGATACCATCAAGTTTGAGCCAAATAAGTGGTTTGAAGTATCTGTCTTTGACTGGTAATAGAATAGTTGGTTCTAT TCCTTCTAGCATAGGGAAGCTGCAAACTTTAGAGGTTCTGGATCTCTCTTCAAACTTGCTTTCTGGGGAGATACCAAATGATCTTGTGAGGTTGAGAAAT CTGACTGCTCTTCTGCTCAATAACAATAAACTCTCCGGGCAGATTCCTTCTGGTTTGGCAAATGTGACTTTGCTCTCAATCTTTAATGTCTCCTTCAATA ACTTGTCTGGGCCTCTGCCATCAAGTAACAATTTGATGAATTGTAGCAGTGTTCTTGGAAACCCGTATCTACACCCTTGCCATGTTTTCTCCCTAGCGTC ACCATCTCCAGATTCTCCAGGAAGGGCTTCCGAGGCACAAAGCTATACTTCTCCATCAGGTCAAAGTCAGAAGAACCGGAGTGGTGGCTTCACATCAATT GAGATAGCATCAATAGCCTCTGCATCAGCCATTTTTTCTGTTCTACTAGCTCTTATTTTCCTATTCATCTACACCAGAAAGTGGAGTCCAAAGTCTAAAA TAATGGGATCTGCTAGAAAGGAAGTAACAATCTTCACAGATATTGGGGTTCCCCTGACATTTGAGAATGTGGTGCGGGCCACTGGGAGCTTCAATGCAAG TAATTGCATCGGCAATGGGGGTTTTGGGTCTACTTACAAGGCAGAGATCTCTCCCGGAGTTCTGGTGGCAATTAAAAAGCTTGCAGTTGGACGATTCCAG GGAATTCAACAGTTCCATGCAGAGATCAAAACCCTTGGAAGACTCCACCATCCAAATCTTGTCACTTTGATTGGTTATCATGCCAGTGAAACGGAAATGT TCCTCGTATATAATTATTTGCCAGGTGGTAATTTGGAAAAGTTTATCCAGGAAAGGTCCACAAGGGCTGTGGATTGGAGGATACTTCACAAAATTGCTCT GGACATAGCTCGTGCACTTGCCTACCTTCATGATCAGTGTGTACCACGTGTACTCCATCGAGATGTCAAGCCCAGTAATATTCTGCTAGATGATGATTTC AACGCCTATCTATCCGACTTTGGTTTGGCCAGGCTGTTGGGAACTTCTGAAACGCATGCTACAACAGGTGTGGCTGGGACTTTCGGGTATGTTGCCCCGG AGTATGCAATGACTTGCCGTGTTTCAGATAAGGCCGATGTTTATAGTTATGGGGTTGTGCTTCTTGAATTACTTTCAGACAAGAAAGCTTTGGATCCATC ATTTTCATCGTACGGGAATGGTTTCAACATTGTTGCTTGGGCATGTATGCTCCTACGGCAGGGCAGAGCTAAGGAGTTCTTTACAGCAGGGCTATGGGAT GCAGGTCCACATGATGATTTGGTAGAAGTCTTACACATGGCAGTTGTGTGTACGGTTGACTCCCTCTCTACCAGGCCAACAATGAAGCAGGTTGTCCGTC GGTTGAAACAACTGCAACCGCCTTCATGCTAG
AA sequence Show only first row Show all	>Potri.017G094400.1 pacid=42814162 polypeptide=Potri.017G094400.1.p locus=Potri.017G094400 ID=Potri.017G094400.1.v4.1 annot-version=v4.1 MGSSYFLSSVIKWQSFTKLKLFSLFCAFSLSLNGVASFDSDKSVLLQFKNSVSDPSGLISGWNLISTNHCHWNGVSCDANSRVVSLNITGNGNYRGKKSG GGGAILCSGDSIELSLYGFGIRRDCKGSKGILMGKLVPLIARLSELRVLSLPFNGFLGLIPSEIWGMEKLEVLDLEGNLVSGSLPVSFSGLRNLRVLNLG FNRIEGEIPDSLSRCDGLEILNIAGNRINGTIPGFAGRFKGVYLSLNQLGGSLPEDFGYNCEKLEHLDLSGNFLVGGIPSNLGNCGNLRTLLLYSNMFEE IIPRELGKLGKLEVLDVSRNSLSGSVPPELGNCSALSVLVLSNMFDPYQDVNGTRGNGLLDHLSSMDEDFNFFQGGIPADVMTLPKLRMLWAPSATLGGM LLSNWDSCDSLEMINLSHNFFKGEIPHGFSRCNKLRYLDLSSNGLYGELLEEFRVPCMTVFDVSGNALSGSIPSFYSSSCPPVPSTIEYPLNIYDPSSAY ISFFAYKAKAGSPTMSLGRNGEISVFHNFGDNNFTGTLQSLPISPVRLGKQTAYTFLAGDNKLSGPFPGILFENCDGLNMMIVNVSNNRMSGQIPANMGP MCRSLKLLDASKNQIAGTIPPSVGELVSLVYLDMSWNLLQGQIPSSLSQISGLKYLSLTGNRIVGSIPSSIGKLQTLEVLDLSSNLLSGEIPNDLVRLRN LTALLLNNNKLSGQIPSGLANVTLLSIFNVSFNNLSGPLPSSNNLMNCSSVLGNPYLHPCHVFSLASPSPDSPGRASEAQSYTSPSGQSQKNRSGGFTSI EIASIASASAIFSVLLALIFLFIYTRKWSPKSKIMGSARKEVTIFTDIGVPLTFENVVRATGSFNASNCIGNGGFGSTYKAEISPGVLVAIKKLAVGRFQ GIQQFHAEIKTLGRLHHPNLVTLIGYHASETEMFLVYNYLPGGNLEKFIQERSTRAVDWRILHKIALDIARALAYLHDQCVPRVLHRDVKPSNILLDDDF NAYLSDFGLARLLGTSETHATTGVAGTFGYVAPEYAMTCRVSDKADVYSYGVVLLELLSDKKALDPSFSSYGNGFNIVAWACMLLRQGRAKEFFTAGLWD AGPHDDLVEVLHMAVVCTVDSLSTRPTMKQVVRRLKQLQPPSC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Potri.017G094400 [exp]	0	1
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Potri.004G120500 [exp]	1.00	0.8948
AT5G52230		MBD13	methyl-CPG-binding domain prot...		Potri.012G138300 [exp]	1.73	0.7978	MBD912
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Potri.012G002200 [exp]	6.70	0.7831	Pt-CNGC.2
AT3G09670			Tudor/PWWP/MBT superfamily pro...		Potri.016G085500 [exp]	6.92	0.8064
AT5G13760			Plasma-membrane choline transp...		Potri.009G056700 [exp]	24.89	0.7568
AT3G14470			NB-ARC domain-containing disea...		Potri.017G128000 [exp]	25.49	0.7263
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.005G038400 [exp]	26.49	0.7739
AT1G05830		SDG30, ATX2	SET DOMAIN PROTEIN 30, trithor...		Potri.018G023000 [exp]	26.83	0.7332
AT3G20770	EIL	AtEIN3, EIN3	ETHYLENE-INSENSITIVE3, Ethylen...		Potri.004G197400 [exp]	28.46	0.7569	Pt-EIN3.1
AT3G14470			NB-ARC domain-containing disea...		Potri.014G007600 [exp]	28.56	0.7366

Compare expression of checked genes

Potri.017G094400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.