Plant FIBer expression Database

Potri.017G094750 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.017G094750.2 pacid=42814070 polypeptide=Potri.017G094750.2.p locus=Potri.017G094750 ID=Potri.017G094750.2.v4.1 annot-version=v4.1
ATGCAGCCAACATTGATGATGTTGGACGTGCAACTGACATGGAAACAAGTGCAGATCCCCTTGATTGTTGGCATAATGGATGGGATTCACAATTCTGTTC
TGCGCCTATTTCTGATGATATTTTGTTTCCTGAAATATTGGAGATTACTCCTACTCAACCACTTCTCTATTCAAATCACTCACCTGGTTCAGGACCCAAA
CAGTAGGGTCAAGGTTGCCGGAGTCCATCTCACAAGGCTGATATCAGCCCAGACCGTGACGAAAGCCAATAGTCAGGAATTCCTCTCAGCCCACTGTTAT
CAGAAGATAAACATTCCCCTGTACATAAATCTTCCACGCTACATGAAGCAGAGTGTCACGCCAAGCATCACACAAACTTCCACCCCATGGTTTTACGGAA
AAGAAAGGCCAAAATTAAACTTATTACTTCTACTGGTAGTCTACAGCCAGCAATGGCTGAATAAGATGAAAGCTTGTCCAACTCCATGGATTCTTGCATT
CGGCAAGGCAACATTCGTAACACTCAACCAAATCTGCAGCTGTTACTTCAGACAATGGCAAAGAATATGA
AA sequence
>Potri.017G094750.2 pacid=42814070 polypeptide=Potri.017G094750.2.p locus=Potri.017G094750 ID=Potri.017G094750.2.v4.1 annot-version=v4.1
MQPTLMMLDVQLTWKQVQIPLIVGIMDGIHNSVLRLFLMIFCFLKYWRLLLLNHFSIQITHLVQDPNSRVKVAGVHLTRLISAQTVTKANSQEFLSAHCY
QKINIPLYINLPRYMKQSVTPSITQTSTPWFYGKERPKLNLLLLLVVYSQQWLNKMKACPTPWILAFGKATFVTLNQICSCYFRQWQRI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.017G094750
[exp]
0 1
AT2G23970 Class I glutamine amidotransfe... Potri.009G078200
[exp]
4.00 0.6690
AT2G31160 OBO1, LSH3 ORGAN BOUNDARY 1, LIGHT SENSIT... Potri.002G037500
[exp]
4.89 0.6704
AT1G68800 TCP TCP12, BRC2, TC... BRANCHED 2, TCP domain protein... Potri.015G050500
[exp]
14.49 0.6560
AT3G47590 alpha/beta-Hydrolases superfam... Potri.013G032500
[exp]
20.34 0.5877
AT1G18400 bHLH bHLH044, BEE1 BR enhanced expression 1 (.1) Potri.015G046300
[exp]
34.87 0.5659
AT3G07960 PIP5K6 phosphatidylinositol-4-phospha... Potri.003G196000
[exp]
39.94 0.6264
AT1G67030 C2H2ZnF ZFP6 zinc finger protein 6 (.1) Potri.014G123700
[exp]
42.03 0.5854
AT1G65810 P-loop containing nucleoside t... Potri.004G077100
[exp]
43.11 0.6095
AT1G54200 unknown protein Potri.001G170500
[exp]
48.74 0.5799
AT1G27660 bHLH bHLH110 basic helix-loop-helix (bHLH) ... Potri.002G032400
[exp]
51.43 0.6205

Potri.017G094750 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.