Plant FIBer expression Database

Potri.017G094900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G15570 233 / 3e-73 Bromodomain transcription factor (.1)
AT3G02160 233 / 6e-73 Bromodomain transcription factor (.1)
AT4G34340 195 / 7e-59 TAF8 TBP-associated factor 8 (.1)
AT1G31240 94 / 2e-21 Bromodomain transcription factor (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G116200
[exp]
639 / 0 AT5G15570 237 / 8e-75 Bromodomain transcription factor (.1)
Potri.006G125200
[exp]
311 / 2e-104 AT4G34340 198 / 2e-60 TBP-associated factor 8 (.1)
Potri.016G092000
[exp]
298 / 5e-99 AT4G34340 246 / 6e-79 TBP-associated factor 8 (.1)
Potri.015G118200
[exp]
115 / 7e-30 AT1G31240 137 / 4e-39 Bromodomain transcription factor (.1)
Potri.012G119500
[exp]
99 / 8e-24 AT1G31240 141 / 2e-40 Bromodomain transcription factor (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013818
[exp]
274 / 2e-89 AT4G34340 272 / 3e-89 TBP-associated factor 8 (.1)
Lus10026530
[exp]
263 / 2e-85 AT4G34340 270 / 2e-88 TBP-associated factor 8 (.1)
Lus10040612
[exp]
105 / 7e-26 AT1G31240 122 / 1e-33 Bromodomain transcription factor (.1)
Lus10018295
[exp]
96 / 1e-22 AT1G31240 126 / 6e-35 Bromodomain transcription factor (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0012 Histone PF07524 Bromo_TP Bromodomain associated
Representative CDS sequence
>Potri.017G094900.2 pacid=42814047 polypeptide=Potri.017G094900.2.p locus=Potri.017G094900 ID=Potri.017G094900.2.v4.1 annot-version=v4.1
ATGAGCCATGGAGGTGGGGAGAGTGGAAGATTGCATGACAAAGCAGGGGATAGTGGTAAGAGAAAGTCGCGTGTTAGTGGAGATGAATTTACTCGAGCGA
TTGCGAAGATTGCTGTAGCGCAAATGTGTGAGACTGTGGGGTTTCAGTCCTTTCAGCAGTCCGCACTTGAGAAATTATCTGATGTTACTACTTGGTATAT
ACGGAATTTAGGAAAGACTGCTCAGTTCTATGCTAATTTAGCTGGTAGGACAGAGGGTAATGTTTTTGACGTTATTCAAGGAATGGAAGAGTTGGGTTTG
TCGCAGGGGTTTGCTGGTGCTTCCAATGTTGATCATTGTCTTGCTAGTTCGGGTATTGTTAGGGAGATTGTTCAGTATATTGGCGATGCAGAGGATATCC
CATTTGTTTATTCTATTCCTCCTTTCCCAGTTGCTAGAGAAAGGAAGCCCGTGCCAAGTTTTTTCCAGATTTGCGAGGAGTCTCCTGCGGAGCATATCCC
GGCTTGGTTACCTGCTTTTCCTGATCCCCAGACTCATGTTCAGTTGCCTGCTGGGAATGAAGGAGATGCTGTTTTTAATGCTGATAAGATTGAGCCTGCA
AGGCATCACCTGAAGATGGATATGTCTTCCATGAATTTGCCACAACATTTTACTTGCAATGGTTCTGGAGGACCTTCCTCTGTTACATTTGGTAACAGTG
CTAGAGCAACACAAGGGACTGAGAGTAACCCGTTTCTTGCTGCTCCTTTGCAATTTGGAGAGAAGGAAGTGTCCCACCTTGTTCCTCCAGCTAGGCTTTC
TGACGAAGCTGCTGTGAGATATCCAGTTGAGCAAAACCGTATAATGGATAACCATATATCAGTACTGGAGACATTTGCTCCTGCCATTGAAGCAATGAAG
AGTAGGTTCTGCGATTCTGAGGAGGGACAGAAGAAGGTGCTTTTGAATCAAAGACCTGCTGTGCAATTTAAGATTCAGGTTGGAAAGAATTCCTTGGCTG
GAGCACCAGATTTGAGCCCTCAGAAAATTGGCATTGAGAAGATCAGCAAGTGGTTTGGGAAGGATAGTGAGAATGATGATAAGAAAAGGAGAGCTGAGAA
AATTCTAAAGCAATCTATGGAAAACCCAAGTGAACTGGGTGAGTTGTAA
AA sequence
>Potri.017G094900.2 pacid=42814047 polypeptide=Potri.017G094900.2.p locus=Potri.017G094900 ID=Potri.017G094900.2.v4.1 annot-version=v4.1
MSHGGGESGRLHDKAGDSGKRKSRVSGDEFTRAIAKIAVAQMCETVGFQSFQQSALEKLSDVTTWYIRNLGKTAQFYANLAGRTEGNVFDVIQGMEELGL
SQGFAGASNVDHCLASSGIVREIVQYIGDAEDIPFVYSIPPFPVARERKPVPSFFQICEESPAEHIPAWLPAFPDPQTHVQLPAGNEGDAVFNADKIEPA
RHHLKMDMSSMNLPQHFTCNGSGGPSSVTFGNSARATQGTESNPFLAAPLQFGEKEVSHLVPPARLSDEAAVRYPVEQNRIMDNHISVLETFAPAIEAMK
SRFCDSEEGQKKVLLNQRPAVQFKIQVGKNSLAGAPDLSPQKIGIEKISKWFGKDSENDDKKRRAEKILKQSMENPSELGEL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G15570 Bromodomain transcription fact... Potri.017G094900
[exp]
0 1
AT5G03990 unknown protein Potri.016G042400
[exp]
5.47 0.7653
AT5G48340 unknown protein Potri.014G174300
[exp]
9.48 0.7722
AT5G53220 unknown protein Potri.015G022500
[exp]
9.48 0.7730
AT4G33890 unknown protein Potri.009G090400
[exp]
10.95 0.7498
AT2G35050 Protein kinase superfamily pro... Potri.001G123500
[exp]
11.00 0.7837
Potri.010G118500
[exp]
12.24 0.7474
AT5G59830 unknown protein Potri.001G236000
[exp]
16.12 0.7768
AT3G18640 C3HZnF Zinc finger C-x8-C-x5-C-x3-H t... Potri.005G061100
[exp]
17.66 0.7758
AT3G23000 PKS7, ATSRPK1, ... SNF1-RELATED PROTEIN KINASE 3.... Potri.010G079000
[exp]
18.65 0.7458 CIPK4.2
AT3G06250 FAR1_related FRS7 FAR1-related sequence 7 (.1) Potri.010G029000
[exp]
25.92 0.7706

Potri.017G094900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.