Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74160 399 / 4e-122 unknown protein AT5G15580 381 / 3e-116 LNG1 longifolia1 (.1) AT3G02170 351 / 2e-105 LNG2 longifolia2 (.1) AT1G18620 317 / 3e-92 unknown protein AT5G15581 59 / 3e-10 unknown protein AT3G53540 50 / 1e-05 unknown protein AT5G62170 47 / 7e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G058900 [exp] 579 / 0 AT1G74160 795 / 0.0 unknown protein Potri.012G061900 [exp] 572 / 0 AT1G74160 730 / 0.0 unknown protein Potri.002G046700 [exp] 68 / 4e-11 AT3G63430 327 / 8e-103 unknown protein Potri.005G216300 [exp] 59 / 2e-08 AT3G63430 245 / 3e-72 unknown protein Potri.015G135200 [exp] 44 / 0.0005 AT5G62170 239 / 2e-68 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017857 [exp] 523 / 5e-168 AT1G74160 752 / 0.0 unknown protein Lus10034678 [exp] 394 / 2e-122 AT1G74160 594 / 0.0 unknown protein Lus10034677 [exp] 145 / 4e-38 AT1G74160 182 / 1e-51 unknown protein Lus10021148 [exp] 145 / 6e-37 AT1G74160 236 / 9e-69 unknown protein Lus10014716 [exp] 92 / 1e-18 AT3G63430 227 / 2e-65 unknown protein Lus10003090 [exp] 87 / 3e-17 AT3G63430 236 / 1e-68 unknown protein Lus10024836 [exp] 87 / 5e-17 AT3G63430 246 / 3e-72 unknown protein Lus10018750 [exp] 69 / 2e-11 AT3G63430 248 / 6e-73 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF14309 [poplar] [flax] DUF4378 Domain of unknown function (DUF4378) PF14383 [poplar] [flax] VARLMGL DUF761-associated sequence motif
Representative CDS sequence Show only first row Show all	>Potri.017G095000.2 pacid=42813206 polypeptide=Potri.017G095000.2.p locus=Potri.017G095000 ID=Potri.017G095000.2.v4.1 annot-version=v4.1 ATGTCTGCAAAGTACATGTATAGGTTATCGGATGAAAACCCAGATCTGCAGAAGCATATCGGATGCATGAATGGCATCTTTCAACTGTTTGACCGCAATC ATATCCTGGGCGGCAGCCGCCGAGCCACCAGCCAAAACCAAAAGAAGCTTCCATCAGGTCAAAATGGCAACCATGGGAATGGGATCCAGCCCAAAGGTGC CCCACAAAAGAAGACCACGGAAAAGAGAGCCAAGGCATTGAAAGAGAAACACAGAACCTCCACTGAATCATCAAGAACCTCGTTTTCATCTTCCTCGTGT TCGTCCAGTATCTCATCCCTTGAATGCAGTAAAGCATCTCAGATGGAACCGTCTTCTTTCAGTCAATCTGTTGCCCCAGAAAACCATGCTCGGAACTCAC ACACGTACAAACCAAATGCTTCTTTGCAGTCAAGCCAACAATCTCTTGATCTCCGGGATGTTGTTAAAGACTCGATCAACAGAGAACCACGTGGCTTATC AGTCAAAACTGCAACCACAGGAGAAGCCCGGGGCCAAACCTTGAAATACATTGATTCCCCAAGACCATTACATTACCTCAACTCTGTAAATCCCAAAGAT CCAGGTCCAAGGGAATCATTTAGAGTTCTTCATAAGCTTCGAGAATCGCCCTACAAATCCAGTGAAGGGAAGAGTAATTTCTTAACAGGTGGACTTAAGG ATGCCCGCAGGTTTTCTTATGATGGATGGGAATCAAGAGACACTTTGAAATCTACTATTAAGCTCAAGGAGCTCCCAAGGCTGTCATTGGACAGCAGAGC AGGCTCTGTAAGGGGTTCCAACCCTGAAATGAAATCAAATTTTCTTTCAAGGGATTTGGGGAGGGATGATCTGAACTCCAACAGTTTCCTAAACAACCAA CAGGATCCAGGAAGCAATAAACGACCGTCTAGTGTAGTGGCCAAGTTGATGGGCCTAGAAGCTCTGCCAGATCCCATGTCAACCAGTGGGAACCAAACAA CGCAGATTAAAACCCACCTAGATGAAGAAAACAAGTTCCTGGGGTCATCGAGAACAACTGATTTGGACAAACAAAATCGAATTTCTGGCTCCCCAAGAAA TCTGCACAAGGAACCCACCTCACCCAGCCAGAGAAATGCTGCCTCAGACAAGAAGCTCACTGCATCCTTAAAGTTTCCAATAGAGCCAGCTCCATGGAGG CAGCCAGATGGAAGCAGAGGTTCTCAAGCACCAGCTCAGAAGAATCGGGTAACTCTAACTAAAGTCCCCAGCTCCTCTCTTTCTGTTTATGGTGAAATAG AGAAAAGGTTGGCACAACTTGAGTTCCAAAAGTCTGGAAAGGATCTTAGAGCTCTTAAGCAAATACTTGAAGCAATGCAGAAGACGAAGGAGATATTAGA GACCAGAAAAGAAGATTCAAGTTTTGAAACTCGGAGAAGCATTATTAGCAGTCTTGATCAGGGCTCAAAGTTGGCAAATCTGCGAGACCTACAGAGCAAC AGCCCCATTTCTGTCTCTACAAAGGGGACCACTTCACCAAAGAGCTTTAAATCTTCAATTGTGATCATGAAACCAGCTAAACTCATTGGAAAAACCATTA ATTCTGTTTCTGCAATAAACGCAACAGATAGTTCATCAGGTATTCACAGGCTCCGGGTTGCTACCCCTGAAGATGGCAGAAAGGAATCAGTTGACAAGCA AGCTGCTAAAGATGTATCTCCCAGAATCAAGAATCTTACAGACCATTCCAATAAACCTCTTCATCGAAATCCCATGGATAAAAATGCTGGTTCTAGATCA ATAAGATTGGCACAACCTTCAAAGGAGATTCGGTCCACAACTAGAGAGGCCACCAACTCAGGTAAGAGGTCAGAAACCATGAACCTAAGACAGCAACAGA AGAAACTGGGGTTTGAGAAGCAATCTCGTCCAGCAACAGCATCATTGGAATCAAACAGGAGAAGAAGGCAGCCAAGTAAACAGCCAACAGACTCATGTTC TCCACATCAAAAACCCAGAGCAAAATCCCTCGACTTGCAGCCAAGTGATTATGAATTGAGTGATATTAGTGATTTAAGAGATTCAAGTCACCACAGTGAT GCTGTTTCTCTGCAATCTGAGAGCAACATTGGCTTGGCCTCACAGTATGATGATGAAGTCTCAAGCAATGACAGATCTAACAAGATCAATAAGACTTTTA TCCAGCAAGCACACTTGAGACAAAGGAACCTGGTCGAAAGGTCAATCAAGGGCACATCAATTCCAGAACCAAGACCAGCTTCTTCAGAACAACCAAGTCC TGTTTCTGTTCTTGATGCTGCATTCTATGGTGATGAATTGCCATCTCCCATTAAGAAAATATCAATTGCCTTTAAAGATGATGAGGCTCTAAAGTCTGAT GGGGTGGAGTGGATTCCTATAGATGAAGACTACTCATTTAACAGCATGAACTCGGGTCTCCACTCAATGATCAATCAGAAGAATGTGCAGAACCTCAAGC CCTTAATTCAGAATCTGAAAGAGATGTTATCAACTCACAAGGAATACATCACTGATGAAACGACACCTTTCTACAACCACGCAAATCCAGACCATGAATA CATTTCACAAATATATTTAGCATCAGGTCTCCATAAAGACTTTGAATCTGGTTTAAGAACCATTAACCTCCATCCAACAGGCACCCCTATCAACCCTGAT ATATTCCATGCCCTAGAACAAGCCAAAGCAAGCTCAGGGCACTTCAATGATGATCACAATGGTAAAAGGATATCCCTGTCAGAAACTCATGCCAAAATCC AAAGGAAACTTCTGTTCGATGTTGTGAATGAAATATTAGTCCACAAATTGCTATCAGAAAATTCTTCCAAACAGCGGCTCTCGTCAAAAATGCTAGCTGG GAAAGGACAAAAAAGACAGCAACTACTGGGAGATTTGTGCTCAGAGATAGATAGGCTGCAATGTCTGCATTATCTTTTAGACGATGAGGATGACAATTCA AGAAGCATCCAATGGGAGGATTTGATGCGTGAATCAATTCACTGGACCGCTTGCCATGATGAAATTCAAGGAATAGTTCTGGCTGTAGAGCGTTTGATCT TCAAAGACTTAATAACTGAGGTCATAAACAGTGAGATGATTGGTCGACAAGGAAGGTTAGCTGGGCATCACAGGCAACTGTTTCCAAAATAA
AA sequence Show only first row Show all	>Potri.017G095000.2 pacid=42813206 polypeptide=Potri.017G095000.2.p locus=Potri.017G095000 ID=Potri.017G095000.2.v4.1 annot-version=v4.1 MSAKYMYRLSDENPDLQKHIGCMNGIFQLFDRNHILGGSRRATSQNQKKLPSGQNGNHGNGIQPKGAPQKKTTEKRAKALKEKHRTSTESSRTSFSSSSC SSSISSLECSKASQMEPSSFSQSVAPENHARNSHTYKPNASLQSSQQSLDLRDVVKDSINREPRGLSVKTATTGEARGQTLKYIDSPRPLHYLNSVNPKD PGPRESFRVLHKLRESPYKSSEGKSNFLTGGLKDARRFSYDGWESRDTLKSTIKLKELPRLSLDSRAGSVRGSNPEMKSNFLSRDLGRDDLNSNSFLNNQ QDPGSNKRPSSVVAKLMGLEALPDPMSTSGNQTTQIKTHLDEENKFLGSSRTTDLDKQNRISGSPRNLHKEPTSPSQRNAASDKKLTASLKFPIEPAPWR QPDGSRGSQAPAQKNRVTLTKVPSSSLSVYGEIEKRLAQLEFQKSGKDLRALKQILEAMQKTKEILETRKEDSSFETRRSIISSLDQGSKLANLRDLQSN SPISVSTKGTTSPKSFKSSIVIMKPAKLIGKTINSVSAINATDSSSGIHRLRVATPEDGRKESVDKQAAKDVSPRIKNLTDHSNKPLHRNPMDKNAGSRS IRLAQPSKEIRSTTREATNSGKRSETMNLRQQQKKLGFEKQSRPATASLESNRRRRQPSKQPTDSCSPHQKPRAKSLDLQPSDYELSDISDLRDSSHHSD AVSLQSESNIGLASQYDDEVSSNDRSNKINKTFIQQAHLRQRNLVERSIKGTSIPEPRPASSEQPSPVSVLDAAFYGDELPSPIKKISIAFKDDEALKSD GVEWIPIDEDYSFNSMNSGLHSMINQKNVQNLKPLIQNLKEMLSTHKEYITDETTPFYNHANPDHEYISQIYLASGLHKDFESGLRTINLHPTGTPINPD IFHALEQAKASSGHFNDDHNGKRISLSETHAKIQRKLLFDVVNEILVHKLLSENSSKQRLSSKMLAGKGQKRQQLLGDLCSEIDRLQCLHYLLDDEDDNS RSIQWEDLMRESIHWTACHDEIQGIVLAVERLIFKDLITEVINSEMIGRQGRLAGHHRQLFPK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G74160			unknown protein		Potri.017G095000 [exp]	0	1
AT1G11670			MATE efflux family protein (.1...		Potri.011G002200 [exp]	4.89	0.9320
AT3G02500			unknown protein		Potri.017G112600 [exp]	13.78	0.9188
					Potri.007G097700 [exp]	14.49	0.9176
AT3G18010	HD	WOX1	WUSCHEL related homeobox 1 (.1...		Potri.015G039100 [exp]	16.24	0.9205
AT4G19810		ChiC	class V chitinase, Glycosyl hy...		Potri.006G188300 [exp]	16.43	0.9132	Pt-CHI5.2
AT5G44680			DNA glycosylase superfamily pr...		Potri.003G156500 [exp]	17.23	0.9082
AT5G56040			Leucine-rich receptor-like pro...		Potri.011G164800 [exp]	19.67	0.8841
AT4G30400			RING/U-box superfamily protein...		Potri.018G098500 [exp]	19.74	0.8912
AT5G44680			DNA glycosylase superfamily pr...		Potri.001G074700 [exp]	20.09	0.9244
AT4G14550	AUX_IAA	SLR, IAA14	SOLITARY ROOT, indole-3-acetic...		Potri.008G161200 [exp]	20.14	0.8912	IAA14.1

Compare expression of checked genes

Potri.017G095000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.