Plant FIBer expression Database

Potri.017G095300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G15610 575 / 0 Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2)
AT3G02200 568 / 0 Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G116700
[exp]
738 / 0 AT5G15610 570 / 0.0 Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013192
[exp]
624 / 0 AT5G15610 578 / 0.0 Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2)
Lus10030706
[exp]
603 / 0 AT5G15610 554 / 0.0 Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0123 HTH PF01399 PCI PCI domain
Representative CDS sequence
>Potri.017G095300.2 pacid=42814160 polypeptide=Potri.017G095300.2.p locus=Potri.017G095300 ID=Potri.017G095300.2.v4.1 annot-version=v4.1
ATGACAACGGTCGTCCCCACCTCCGAAGAGGATCCAGCCCTCTCCGTCGTCCGTTTCACCTCCGAACTCGCCTGGTCCGACGCCGGTCCCGAGGTTATGG
AGCAACAAGTGAGTAGGCTGTGTGTGGAAGCGCAGGAATGTATGGTGATGAACAGGTGGTTGGATTTGACTTCTTTAATGTTAACTTCTGCTGACATTGT
TTTCTCAAACTCCAAGGTCTCTGAGAAAGATCTTGAGTGTATCTTCACTGTCATTTGCAATCTCGTCACCAAGTCTAGAAGTCCAGATGAAGAACTTGAG
ATGGCAAAACTTATATGCGCAAAAATTATTCAACAACCAAGTGACAAGCCTGCATTGCGCCTAAAGATCTTGTTCAATCTGTACAACCTACTGGATAATG
CATACTGCCGGTTCTATGTTTTCATGAAGGCCCTAACTTTGGCAGTGAGTGGAAAAGTCACTGAACATGTCATTCCTTCTTTCAAAAAGATTGATAGTTT
CTTGAAAGAATGGAATCTTGAAGTCCAAGATCAGAGAGAGCTTTTTCTCAGTGTTGCTAATGCACTAAAAGATAGTAAGAGCTCTGCAAAGGATTCTTTC
AAATTCTTGACCAAGTATTTAGCAACTTTCTCCGACGAGGACACATATAAAATGGGTGAAGCCAAGGAGGAAGCTGCCCGTACAATTATCGAATTTGTCA
AGGCACCTGACATGTTTCAGTGTGATCTTCTAGATATGCCTGCTGTAGGGCAATTGGAAAAGGATGCTAAATATGCATTGGTATATCAGCTACTAAAGAT
CTTCCTGACTCAAAGACTGGATGCTTATTTGGAGTTTCAAGCTGCGAATTCTGCTCTACTGAAAAGCTATGGTCTTGTTCATGAAGATTGTATAGCGAAG
ATGCGGTTGATGTCTTTGGTGGATCTTGCATCACATGAATCTGGTCGAATTCCATATGCCCTCATCAAAGATACTCTTCGGATTGATAATGATGAGGTGG
AATTATGGGTAGTCAAGGCATTAACTACCAAGTTAATTGACTGTAAAATGGACCAGTTGAATCAAGTTGTGCTTGTGAGTTCTTGTACCGAGCGTGTATT
TGGGCTGCGACAGTGGCAGGCGCTAAGGACAAAGCTTGGTACATGGAGGGGTAATATTGAGAGTGTCATCAACACCATCCAAGCTAACAAGATCACTGAA
GATAGTTCACAGGCAGTGCAGGGAATGATGATTCGTTAG
AA sequence
>Potri.017G095300.2 pacid=42814160 polypeptide=Potri.017G095300.2.p locus=Potri.017G095300 ID=Potri.017G095300.2.v4.1 annot-version=v4.1
MTTVVPTSEEDPALSVVRFTSELAWSDAGPEVMEQQVSRLCVEAQECMVMNRWLDLTSLMLTSADIVFSNSKVSEKDLECIFTVICNLVTKSRSPDEELE
MAKLICAKIIQQPSDKPALRLKILFNLYNLLDNAYCRFYVFMKALTLAVSGKVTEHVIPSFKKIDSFLKEWNLEVQDQRELFLSVANALKDSKSSAKDSF
KFLTKYLATFSDEDTYKMGEAKEEAARTIIEFVKAPDMFQCDLLDMPAVGQLEKDAKYALVYQLLKIFLTQRLDAYLEFQAANSALLKSYGLVHEDCIAK
MRLMSLVDLASHESGRIPYALIKDTLRIDNDEVELWVVKALTTKLIDCKMDQLNQVVLVSSCTERVFGLRQWQALRTKLGTWRGNIESVINTIQANKITE
DSSQAVQGMMIR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G15610 Proteasome component (PCI) dom... Potri.017G095300
[exp]
0 1
AT5G10360 RPS6B, EMB3010 Ribosomal protein small subuni... Potri.002G099500
[exp]
6.48 0.8648
AT3G10260 Reticulon family protein (.1.2... Potri.005G206800
[exp]
10.39 0.7715
AT5G39740 OLI7, RPL5B OLIGOCELLULA 7, ribosomal prot... Potri.013G128600
[exp]
14.00 0.8266
AT1G65290 MTACP2 mitochondrial acyl carrier pro... Potri.013G084500
[exp]
14.56 0.8400
AT5G24510 60S acidic ribosomal protein f... Potri.002G179400
[exp]
17.66 0.8483
AT1G10840 TIF3H1 translation initiation factor ... Potri.014G147100
[exp]
22.97 0.8113 TIF3.5
AT1G22520 Domain of unknown function (DU... Potri.013G105766
[exp]
25.98 0.7776
AT3G59540 Ribosomal L38e protein family ... Potri.017G026000
[exp]
31.74 0.8176
AT3G08943 ARM repeat superfamily protein... Potri.006G103300
[exp]
31.74 0.8270
AT3G44750 HDT1, HDA3, ATH... HISTONE DEACETYLASE 2A, histon... Potri.004G188800
[exp]
32.17 0.8142 HDT902,Pt-HD2.1

Potri.017G095300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.