Plant FIBer expression Database

Potri.017G095500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.017G095500.1 pacid=42813457 polypeptide=Potri.017G095500.1.p locus=Potri.017G095500 ID=Potri.017G095500.1.v4.1 annot-version=v4.1
ATGAAGAGTCTTTCCTTGTCAGCTCTGACATTGTCGTCGTCGTCGTTGACGACGATGCTGCTCAACACAAAATGTTGCGGTGCTAGTATTTCACTGCCGG
AAATGGACGGTGACGTCCCCTTGTACTCCATAGCTGATTCCAACTTAGATTTGGAGTTCATGATGGATTCTGAAATTAACAGGATTCTCGTTGCCCCTCG
CCGTGTTGGAGGTGGTGCTCTCAATCCTCATAAACCAGCGTTTGTTACACTCAATGTTCCTCAATGTTCCTCTCATTTAAAGCAATTTTCATTGCTCGAT
CACTAA
AA sequence
>Potri.017G095500.1 pacid=42813457 polypeptide=Potri.017G095500.1.p locus=Potri.017G095500 ID=Potri.017G095500.1.v4.1 annot-version=v4.1
MKSLSLSALTLSSSSLTTMLLNTKCCGASISLPEMDGDVPLYSIADSNLDLEFMMDSEINRILVAPRRVGGGALNPHKPAFVTLNVPQCSSHLKQFSLLD
H

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.017G095500
[exp]
0 1
AT5G49760 Leucine-rich repeat protein ki... Potri.003G046450
[exp]
4.47 0.8884
AT5G08280 HEMC hydroxymethylbilane synthase (... Potri.005G091600
[exp]
5.29 0.9036
AT4G01690 PPOX, HEMG1, PP... Flavin containing amine oxidor... Potri.002G186300
[exp]
10.48 0.9035
AT1G58200 MSL3 MSCS-like 3 (.1.2) Potri.005G154000
[exp]
11.57 0.8335
AT5G60440 MADS AGL62 AGAMOUS-like 62 (.1) Potri.006G258550
[exp]
12.00 0.8916
AT1G75800 Pathogenesis-related thaumatin... Potri.001G221300
[exp]
14.49 0.8859
AT4G23290 CRK21 cysteine-rich RLK (RECEPTOR-li... Potri.018G111751
[exp]
16.73 0.8818
AT5G23980 FRO2, ATFRO4, F... ferric reduction oxidase 4 (.1... Potri.004G079200
[exp]
17.23 0.8549 Pt-FRO2.2
AT2G18300 bHLH bHLH064, HBI1 basic helix-loop-helix (bHLH) ... Potri.007G023600
[exp]
18.89 0.8647
AT4G26555 FKBP-like peptidyl-prolyl cis-... Potri.001G467100
[exp]
22.24 0.8718

Potri.017G095500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.