Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51550 270 / 2e-81 FER FERONIA, Malectin/receptor-like protein kinase family protein (.1) AT5G39000 249 / 7e-74 Malectin/receptor-like protein kinase family protein (.1) AT5G38990 240 / 2e-70 Malectin/receptor-like protein kinase family protein (.1) AT5G39020 219 / 6e-63 Malectin/receptor-like protein kinase family protein (.1) AT5G28680 214 / 3e-61 ANX2 ANXUR2, Malectin/receptor-like protein kinase family protein (.1) AT3G04690 214 / 4e-61 ANX1 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) AT5G39030 210 / 6e-60 Protein kinase superfamily protein (.1) AT1G30570 184 / 1e-50 HERK2 hercules receptor kinase 2 (.1) AT4G39110 166 / 5e-44 Malectin/receptor-like protein kinase family protein (.1) AT2G21480 164 / 1e-43 Malectin/receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G097001 [exp] 680 / 0 AT3G51550 506 / 2e-168 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.017G095900 [exp] 299 / 3e-92 AT3G51550 845 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.017G096000 [exp] 290 / 7e-89 AT3G51550 832 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.006G110000 [exp] 290 / 8e-89 AT3G51550 1256 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.017G096800 [exp] 288 / 2e-88 AT3G51550 823 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.016G138700 [exp] 288 / 6e-88 AT3G51550 1252 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.017G096600 [exp] 277 / 6e-84 AT3G51550 829 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.010G140000 [exp] 241 / 3e-71 AT3G51550 696 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.011G165800 [exp] 241 / 4e-71 AT3G51550 657 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032971 [exp] 332 / 3e-104 AT3G51550 706 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10032976 [exp] 330 / 5e-104 AT3G51550 682 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10003942 [exp] 305 / 1e-94 AT3G51550 656 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10029945 [exp] 289 / 9e-91 AT3G51550 424 / 1e-137 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10014185 [exp] 276 / 2e-83 AT3G51550 1254 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10022728 [exp] 211 / 8e-60 AT3G51550 1184 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10042537 [exp] 192 / 4e-53 AT3G04690 942 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Lus10021998 [exp] 191 / 8e-53 AT3G04690 929 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Lus10037768 [exp] 187 / 1e-52 AT3G04690 400 / 1e-147 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Lus10016907 [exp] 178 / 3e-48 AT3G04690 967 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [poplar] [flax] GBD PF11721 [poplar] [flax] Malectin Malectin domain
Representative CDS sequence Show only first row Show all	>Potri.017G095566.1 pacid=42814095 polypeptide=Potri.017G095566.1.p locus=Potri.017G095566 ID=Potri.017G095566.1.v4.1 annot-version=v4.1 ATGAGTAGCAGCAGCAGCAGCAAATCTCTCTCTCTCACAAACTTATCTCTCTTCACTCCTCTGCACCTCTCCTTCCTGTTCCTCCATCTCACCATCCTTG TAACCGGGGATCTACCACCACCTTACGTCCCTCTCGATAGCATAGCGCTTGATTGTGGTTCATCCTCCCAGATTTTTGTAAACGGTAGGCAATGGACTGC AGACATCAACTCAAAAGTGGCCCTTCTAGATCAAGACAGCCCCACAACAAATCTCACAGCAAATGGAGCCTCCACTAGCTCTGTACCTTATTATACTGCT CGCGTCTCTCTCTCCCAATTCACCTACACATTTCCTGTCACAACAACAGGACCTAAGTTTGTTCGCCTCCATTTCAATCCAGCTTCCTACACTGGTTTCA ACAGGTCTAAAGCATCTTTTTCTGTCACAACCGGTCGCTATACCTTTCTTAGCAACTTCAGTGGCTTCCATTACACTGACCCACGTGGTGAACGAGGAGG TTACGCCAGAGAATTCATCTTAAATGTTGAAGATGAGCAGAAAAATCTGAGCATAACGTTCACGCCAAGCCCTCATGTAGCTGATGCATATGCTTTCATC AACGGGATTGAAATCGTATCCATGCCCACCAATCTTTATTACAGTACTGCAGGAGATGACCCAGGGCCGTATGATTTTGACCGGGAGTTCTATCTTCCCC TTGAAAACAAAACTGCTTTAGAGATCATGTACCGAGTAAATGTGGGTGGGGGAGAGATCACACCGCCCTACGACACTGGCATGTTTCGAAGTTGGTTAAG CGATGTCGATTACTTGACGGATGCTCGACCAAGCGCTTTTGAATATAATGACACTATTCAACTTCAGTATAATAACCACACTCGCTATGCTGCACCTGAC GTGCTCTATCGAACTGCTAGGGCCATGGCGAACAATTCAACTGTAAATGAGAAATACAATCTGACTTGGGAGTTTCCGGTCCACTCCAGATTCACCTATC TTGTTAGGCTTCATTTCTGTCAGTTTATACCGATTATATTGCAAAAAGGCGATCTAGTCTTTAAAATATATATCGCTAATCAAACGGCAGAGAATTATGC AGATATAATCTCTTGGGCTGATGGATATGGGGTTCCCATATACAAAGATTACGAAGTGATGATGGATGCCAGAGGAAACGAAGAGATACAGAATTTGTCA ATTGCATTGCACCCTATTCAGTCTACTAAGTTTTTTGATGCAATGTTGAATGGAGCTGAAATCTTCAAATTGAGCAACTCAGACAATCTTGCCGGACCAA ATCCTGACGCGTATCCTGACAGCCCCTTTAGTAATACTCCTAGCGCGACCTCAACAAAGCCAAAGCATAGTCGAAGAAGAACAGTCGCCATTATTGTTCT GCTGTTTCGGGCATTGTTGTCGTCTCTGTTCTATTTCTCTTGA
AA sequence Show only first row Show all	>Potri.017G095566.1 pacid=42814095 polypeptide=Potri.017G095566.1.p locus=Potri.017G095566 ID=Potri.017G095566.1.v4.1 annot-version=v4.1 MSSSSSSKSLSLTNLSLFTPLHLSFLFLHLTILVTGDLPPPYVPLDSIALDCGSSSQIFVNGRQWTADINSKVALLDQDSPTTNLTANGASTSSVPYYTA RVSLSQFTYTFPVTTTGPKFVRLHFNPASYTGFNRSKASFSVTTGRYTFLSNFSGFHYTDPRGERGGYAREFILNVEDEQKNLSITFTPSPHVADAYAFI NGIEIVSMPTNLYYSTAGDDPGPYDFDREFYLPLENKTALEIMYRVNVGGGEITPPYDTGMFRSWLSDVDYLTDARPSAFEYNDTIQLQYNNHTRYAAPD VLYRTARAMANNSTVNEKYNLTWEFPVHSRFTYLVRLHFCQFIPIILQKGDLVFKIYIANQTAENYADIISWADGYGVPIYKDYEVMMDARGNEEIQNLS IALHPIQSTKFFDAMLNGAEIFKLSNSDNLAGPNPDAYPDSPFSNTPSATSTKPKHSRRRTVAIIVLLFRALLSSLFYFS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Potri.017G095566 [exp]	0	1
AT5G38260			Protein kinase superfamily pro...		Potri.010G121350 [exp]	3.16	0.9401
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G023788 [exp]	3.74	0.9692
AT2G25410			RING/U-box superfamily protein...		Potri.003G080200 [exp]	4.47	0.9565
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G024052 [exp]	7.34	0.9526
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G024101 [exp]	7.74	0.9549
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.012G028366 [exp]	7.93	0.9209
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Potri.017G095632 [exp]	8.12	0.9202
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Potri.017G096000 [exp]	8.77	0.9328
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G024228 [exp]	11.31	0.9462
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Potri.010G010100 [exp]	15.29	0.9306

Compare expression of checked genes

Potri.017G095566 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.