Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51550 402 / 5e-134 FER FERONIA, Malectin/receptor-like protein kinase family protein (.1) AT5G28680 350 / 2e-114 ANX2 ANXUR2, Malectin/receptor-like protein kinase family protein (.1) AT3G04690 344 / 2e-112 ANX1 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) AT5G39000 332 / 2e-107 Malectin/receptor-like protein kinase family protein (.1) AT5G38990 328 / 5e-106 Malectin/receptor-like protein kinase family protein (.1) AT5G54380 326 / 3e-105 THE1 THESEUS1, protein kinase family protein (.1) AT5G61350 315 / 3e-101 Protein kinase superfamily protein (.1) AT5G59700 314 / 5e-101 Protein kinase superfamily protein (.1) AT3G46290 314 / 6e-101 HERK1 hercules receptor kinase 1 (.1) AT4G39110 311 / 2e-99 Malectin/receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G138700 [exp] 401 / 1e-133 AT3G51550 1252 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.006G110000 [exp] 397 / 4e-132 AT3G51550 1256 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.017G096400 [exp] 368 / 2e-126 AT3G51550 451 / 6e-151 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.017G095900 [exp] 371 / 4e-122 AT3G51550 845 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.017G096000 [exp] 367 / 2e-120 AT3G51550 832 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.017G096600 [exp] 365 / 7e-120 AT3G51550 829 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.005G055200 [exp] 363 / 3e-119 AT5G28680 1026 / 0.0 ANXUR2, Malectin/receptor-like protein kinase family protein (.1) Potri.013G042500 [exp] 357 / 7e-117 AT3G04690 1036 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Potri.017G096800 [exp] 348 / 8e-114 AT3G51550 823 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022728 [exp] 391 / 3e-130 AT3G51550 1184 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10014185 [exp] 392 / 5e-130 AT3G51550 1254 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10032971 [exp] 369 / 4e-121 AT3G51550 706 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10016907 [exp] 357 / 5e-117 AT3G04690 967 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Lus10032976 [exp] 340 / 3e-110 AT3G51550 682 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10038595 [exp] 322 / 5e-109 AT5G54380 718 / 0.0 THESEUS1, protein kinase family protein (.1) Lus10037767 [exp] 315 / 8e-108 AT3G04690 405 / 2e-136 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Lus10042537 [exp] 330 / 5e-107 AT3G04690 942 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Lus10021998 [exp] 330 / 7e-107 AT3G04690 929 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Lus10003942 [exp] 330 / 1e-106 AT3G51550 656 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.017G095632.1 pacid=42814109 polypeptide=Potri.017G095632.1.p locus=Potri.017G095632 ID=Potri.017G095632.1.v4.1 annot-version=v4.1 ATGCTCTCCCAGCTTAGATTCCGCCATTTGGTTTCTCTAATTGGTTACTGTAATGAGAATAATGAGATGATCCTGGTGTCTGATTATATGGCTCGGGGGA CGCTTCGTGATCATCTCTACAGAACTGATAATCCTCCACTTTCATGGACTCAACGCCTAGAGATTTGCATCGGTGCTGCCCGTGGGTTGCATTACCTTCA CACAGGTGCAAAGCACACTGTCATTCATCGTGATGTGAAGACAACAAATATCTTGCTGGATGAGAAATGGGTGGCCAAAGTTTCGGATTTCGGATTGTCC AAAACAGGCCCTACGAGCACATCAAAGGGCCACGTGAGCACCGTTGTGAAAGGTAGCATTGGGTACTTGGATCCCGAGTATTGTCAACGCCAGCAATTGA CAGAAAAATCTGATGTCTATTCATTTGGGGTTGTGTTGTTCGAGGTATTGTGTGCTAGACCAGCAATAAACCGATCAGCAGTGCCAGCAAGTCTAGCAGA GTTGGCTAGACAAAGCCACAGCAACGGAACGATTAATGAAATCATTGATCCGTATCTGGATGGAAAGATCTCACCAGATTGTCTGAAAAAATTTGTTGAT GTTGCAGTGAGATGCTTGCTCGAGAATGGAATCGAAAGGCCATCGATGACGGATGTGGTTTGGGGCCTTGAGTTTGCATTACAACTGCAAGGGAGCGCAG ACGAGAATGTCAAAGGGGCTCAAACTGAGAAAGAAGTTGACATGGTGAGTCCTCTGAAAGGCTCCTCAATCGATGACAGCAGTAATTTGTTTAGTACTGG CAGTGAACTAGTTGTGAATTCCCGCATTTTGGAAATGGCAACAACAATCAGCAGCCACGGACAGAGTTTTCTAAGCAACGAGTCGGAGAAAATGATGTCT GGTGCTGTGTTCTCTGAGATCATGAACCCAAAAGGGCGATGA
AA sequence Show only first row Show all	>Potri.017G095632.1 pacid=42814109 polypeptide=Potri.017G095632.1.p locus=Potri.017G095632 ID=Potri.017G095632.1.v4.1 annot-version=v4.1 MLSQLRFRHLVSLIGYCNENNEMILVSDYMARGTLRDHLYRTDNPPLSWTQRLEICIGAARGLHYLHTGAKHTVIHRDVKTTNILLDEKWVAKVSDFGLS KTGPTSTSKGHVSTVVKGSIGYLDPEYCQRQQLTEKSDVYSFGVVLFEVLCARPAINRSAVPASLAELARQSHSNGTINEIIDPYLDGKISPDCLKKFVD VAVRCLLENGIERPSMTDVVWGLEFALQLQGSADENVKGAQTEKEVDMVSPLKGSSIDDSSNLFSTGSELVVNSRILEMATTISSHGQSFLSNESEKMMS GAVFSEIMNPKGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Potri.017G095632 [exp]	0	1
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Potri.017G097001 [exp]	2.00	0.9037
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Potri.017G095566 [exp]	8.12	0.9202
AT5G24010			Protein kinase superfamily pro...		Potri.005G143700 [exp]	26.98	0.8793
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G023788 [exp]	27.36	0.8799
AT2G25410			RING/U-box superfamily protein...		Potri.003G080200 [exp]	31.32	0.8786
AT1G17840		AtABCG11, WBC11...	DESPERADO, CUTICULAR DEFECT AN...		Potri.005G073050 [exp]	34.14	0.8759
AT4G27290			S-locus lectin protein kinase ...		Potri.001G410800 [exp]	37.41	0.8556
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G024052 [exp]	39.49	0.8694
AT2G25470		AtRLP21	receptor like protein 21 (.1)		Potri.003G013200 [exp]	41.74	0.8620
AT3G45290		ATMLO3, MLO3	MILDEW RESISTANCE LOCUS O 3, S...		Potri.006G129700 [exp]	42.19	0.8763

Compare expression of checked genes

Potri.017G095632 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.