Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51550 845 / 0 FER FERONIA, Malectin/receptor-like protein kinase family protein (.1) AT5G39000 842 / 0 Malectin/receptor-like protein kinase family protein (.1) AT5G38990 784 / 0 Malectin/receptor-like protein kinase family protein (.1) AT5G28680 676 / 0 ANX2 ANXUR2, Malectin/receptor-like protein kinase family protein (.1) AT3G04690 669 / 0 ANX1 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) AT1G30570 549 / 0 HERK2 hercules receptor kinase 2 (.1) AT5G54380 523 / 9e-173 THE1 THESEUS1, protein kinase family protein (.1) AT5G59700 513 / 2e-169 Protein kinase superfamily protein (.1) AT5G39030 492 / 1e-161 Protein kinase superfamily protein (.1) AT5G39020 478 / 4e-156 Malectin/receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G096000 [exp] 1627 / 0 AT3G51550 832 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.017G096600 [exp] 1559 / 0 AT3G51550 829 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.017G096800 [exp] 1438 / 0 AT3G51550 823 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.016G138700 [exp] 822 / 0 AT3G51550 1252 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.006G110000 [exp] 818 / 0 AT3G51550 1256 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.017G096400 [exp] 750 / 0 AT3G51550 451 / 6e-151 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.008G105500 [exp] 727 / 0 AT3G04690 999 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Potri.010G145600 [exp] 716 / 0 AT3G04690 1027 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Potri.005G055200 [exp] 679 / 0 AT5G28680 1026 / 0.0 ANXUR2, Malectin/receptor-like protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014185 [exp] 801 / 0 AT3G51550 1254 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10022728 [exp] 737 / 0 AT3G51550 1184 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10016907 [exp] 675 / 0 AT3G04690 967 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Lus10032976 [exp] 647 / 0 AT3G51550 682 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10042537 [exp] 638 / 0 AT3G04690 942 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Lus10028140 [exp] 542 / 2e-180 AT3G46290 1024 / 0.0 hercules receptor kinase 1 (.1) Lus10042844 [exp] 540 / 1e-179 AT3G46290 1025 / 0.0 hercules receptor kinase 1 (.1) Lus10037887 [exp] 508 / 7e-167 AT5G54380 1279 / 0.0 THESEUS1, protein kinase family protein (.1) Lus10027509 [exp] 468 / 8e-152 AT5G24010 996 / 0.0 Protein kinase superfamily protein (.1) Lus10021998 [exp] 418 / 6e-133 AT3G04690 929 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0202 [poplar] [flax] GBD PF11721 [poplar] [flax] Malectin Malectin domain
Representative CDS sequence Show only first row Show all	>Potri.017G095900.1 pacid=42813717 polypeptide=Potri.017G095900.1.p locus=Potri.017G095900 ID=Potri.017G095900.1.v4.1 annot-version=v4.1 ATGCATAGGTTTTCTTACTCCAATTTATTCCACAAAAGAAATAGCATAATGTCCATCTTCATCGCTCTCTACCTTCTCCCTCCCCTCCATCTCTTCCTCT ACGTTACTGCTACTACAGATTACTTGCTGCCATACAGCCCCACTGATCTAATACTCCTTAACTGTGGTGCATCCTCTAATTTGTTATCTCCAGATGGTCG TGGTTGGGATGGTGATTCCCAGTCTAAGTTTGCTGCCTCTAACCCCCCAGAAGCCTCATCTGTGTTTGAAGCCTCCAATCAAGACCCCTCTGTCAACCAA GTCCCATACATGACAGCCCGTATTTTTCACTCTAAATTCACTTACACATTTCCAGTCTTGCCTGGCCCAAAATTTGTGCGTCTCTACTTTTATCCAGCTT CTTACTCAAATCTTGATATATCCACATCCTATTTCTCGCTTAGTGCCAATAACTACGAGCTACTAAACAACTTTAGTGCCTCTCTTACAGTTTCTGCTAT AAGACCTCCAGTGGACTACTTCACCAAAGAGTTCATCATCACCGTGTGGGACAGCCAGAAGCTTGAATTAAACTTCATTCCGTCTCCAGCATCTTTTGCC TTCATTAATGGTATCGAAATCGTTTCCATGCCAGACAGCTTCTATTCTCGTGGCAATGATAATCCACTGACCTATGTGGGCACCGATCTCTTCTTCTATC TGGATAACACAACTGTGCTTGAGACAGTTTATCGACTGAATGTTGGGGGGAAAGATATCAGCAGCACAGGAGATACTGGAATGTACAGGACATGGCATCA AGATTTAGAGTATCTCCTTGGTGGACAAACTGGAAACACTCCATATCTCCCAGGCGTTAAGATAAAGTACACAACCAAAACGCCAGCTTACTCCGCACCT GTTATGGTATATAGTACTATGCGTTCAATGGGTCCTGAACCACTTCTTAACCTGAATTACAATCTCACCTGGAACTTCCCAGTTGATGCTGGTTTCCATT ATCTCCTTAGGCTCCACTTTTGTGAGACTCGGATGGAGATCAAAAATGAAAATCAACAGGTATTTTTAATATTCATCAACAATCAAACAGCAGAGCATGA TGCAGATGTGATCCATATGAGCGGTGGCAACGGCATTCCAGTTTACAAAGACTACATCGTGCAGGTCCCTCAAGGGAGCCAGAGCAAGCAGGACTTGTGG CTCGAACTACACCCTAACATGGAACTGAAACCTACTTATGCTGATGCAATCTTGAATGGCTTGGAAATATTCAAGCTGAATAGAACAGATGGAAATCTTG CAGGATTCAACCCTGAGCCAACAGTGGCTCCTCCACCAGCAGAACAACATCCAAGTCTAAAAGAGAGAAGAACGGGCAAAAGATCATCAATACTTACGGT TATAGGCATCGTTGGAGGTTCCATAGGTGCAGTATTTGCTTTCTCTCTTATTCTTTATTTCTTCGCTTTCAAGCAGAAGCGAGTCAAGGACCCTAGCAAG AGTGAGGAAAAATCCTCCTGGACTATAATATCACAAACATCTAGGTCCACGACTACAATCTCTTCATCACTACCTACTGATCTTTGCCGACGGTTTACAT TTGTTGAAATCAAAGAAGCAACAAGAAACTTTGATGATCAAAATATTATTGGTTCAGGGGGATTTGGTACTGTGTATAAAGGATACATTGAATACGGTTT CACCGCAGTAGCCATCAAACGACTAGATTCATCATCAAAGCAAGGGACACGAGAGTTCCAGACAGAGATTGAGATGTTATCCAATCTTCGCCACCTCCAT CTAGTGTCACTGATTGGATACTGTGATGATCATGGCGAGATGATCCTTGTATACGATTACATGTCCAGAGGCACCCTTAGAGAACATCTATACAAAACAA AGAGCTCTCCTCTTCCATGGAAGCAAAGGCTAGAAATATGCATTGGTGCTGCAAAAGGGTTGCATTATCTTCATTCAGGAGCAAAGCACACAATCATTCA TCGTGATGTGAAGTCAACAAACATATTGTTAGATGAGAATTGGGTGGCTAAGGTTTCAGATTTTGGGCTGTCCAGATTGGGTCCCACTAGTACATCCCAA ACCCATGTTAGCACTGTAGTTAGAGGTAGCTTTGGATATGTGGATCCAGAGTACTACCGCAGGCAACACCTAACAGAGAAATCTGATGTTTATTCATTCG GTGTGGTTTTGTTTGAGGTGCTATGTGCAAGGCCACCAGTGATTCCAAGTTCACCGAAAGAGCAAGCAAGCTTAGCTGAGTGGGCAAGAAAGTGTTACCT AAGAGGAACCCTTGATGAGATCGTGGATCCACATTTAAAGGGCGAGGTTGCCCCTGTCTCTTTAAATAAGTTTGCAGAGATTGCTAACAGTTGCTTACAT GGTCAAGGAATTGAACGCCCAAAAATGGGTGATGTCGTTTGGGGCCTTGAATTTGCATTGCAGCTTCAACAAACTGCTGAGAAAAATGCCAACAGTGTAG AAGGGATCAATATGGAAAATAAAAGCTCATTATCACCACATCGAGATGTCATGACCACTGATGACGATGACATGTTTAGTGGAGCCGAGTCACATTCAAG GAGCACAGTTAGCACTCATGCAAGTGTCACCCAAAGTGATCCAGATCAAAGAGCAATGGGTGTGTTTTCTGAAATAATTGACCCAAAGGCAAGATGA
AA sequence Show only first row Show all	>Potri.017G095900.1 pacid=42813717 polypeptide=Potri.017G095900.1.p locus=Potri.017G095900 ID=Potri.017G095900.1.v4.1 annot-version=v4.1 MHRFSYSNLFHKRNSIMSIFIALYLLPPLHLFLYVTATTDYLLPYSPTDLILLNCGASSNLLSPDGRGWDGDSQSKFAASNPPEASSVFEASNQDPSVNQ VPYMTARIFHSKFTYTFPVLPGPKFVRLYFYPASYSNLDISTSYFSLSANNYELLNNFSASLTVSAIRPPVDYFTKEFIITVWDSQKLELNFIPSPASFA FINGIEIVSMPDSFYSRGNDNPLTYVGTDLFFYLDNTTVLETVYRLNVGGKDISSTGDTGMYRTWHQDLEYLLGGQTGNTPYLPGVKIKYTTKTPAYSAP VMVYSTMRSMGPEPLLNLNYNLTWNFPVDAGFHYLLRLHFCETRMEIKNENQQVFLIFINNQTAEHDADVIHMSGGNGIPVYKDYIVQVPQGSQSKQDLW LELHPNMELKPTYADAILNGLEIFKLNRTDGNLAGFNPEPTVAPPPAEQHPSLKERRTGKRSSILTVIGIVGGSIGAVFAFSLILYFFAFKQKRVKDPSK SEEKSSWTIISQTSRSTTTISSSLPTDLCRRFTFVEIKEATRNFDDQNIIGSGGFGTVYKGYIEYGFTAVAIKRLDSSSKQGTREFQTEIEMLSNLRHLH LVSLIGYCDDHGEMILVYDYMSRGTLREHLYKTKSSPLPWKQRLEICIGAAKGLHYLHSGAKHTIIHRDVKSTNILLDENWVAKVSDFGLSRLGPTSTSQ THVSTVVRGSFGYVDPEYYRRQHLTEKSDVYSFGVVLFEVLCARPPVIPSSPKEQASLAEWARKCYLRGTLDEIVDPHLKGEVAPVSLNKFAEIANSCLH GQGIERPKMGDVVWGLEFALQLQQTAEKNANSVEGINMENKSSLSPHRDVMTTDDDDMFSGAESHSRSTVSTHASVTQSDPDQRAMGVFSEIIDPKAR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Potri.017G095900 [exp]	0	1
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Potri.017G096000 [exp]	2.00	0.9814
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Potri.017G096600 [exp]	6.00	0.9444
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Potri.017G096800 [exp]	7.21	0.9340
AT1G18390			Protein kinase superfamily pro...		Potri.015G044750 [exp]	12.00	0.8907
AT2G23200			Protein kinase superfamily pro...		Potri.005G143200 [exp]	15.87	0.8834
AT2G03340	WRKY	WRKY3	WRKY DNA-binding protein 3 (.1...		Potri.008G091900 [exp]	16.61	0.9132	WRKY3.1
AT4G33090		ATAPM1, APM1	aminopeptidase M1 (.1)		Potri.017G039200 [exp]	18.30	0.9268
AT3G59140		ATMRP14, ABCC10	ATP-binding cassette C10, mult...		Potri.015G023800 [exp]	20.56	0.8909	Pt-ATMRP14.3
AT4G16580			Protein phosphatase 2C family ...		Potri.005G125700 [exp]	21.23	0.9135
AT4G23200		CRK12	cysteine-rich RLK (RECEPTOR-li...		Potri.018G111700 [exp]	24.61	0.9228

Compare expression of checked genes

Potri.017G095900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.