Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51550 833 / 0 FER FERONIA, Malectin/receptor-like protein kinase family protein (.1) AT5G39000 821 / 0 Malectin/receptor-like protein kinase family protein (.1) AT5G38990 776 / 0 Malectin/receptor-like protein kinase family protein (.1) AT5G28680 665 / 0 ANX2 ANXUR2, Malectin/receptor-like protein kinase family protein (.1) AT3G04690 658 / 0 ANX1 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) AT1G30570 542 / 4e-180 HERK2 hercules receptor kinase 2 (.1) AT5G54380 516 / 5e-170 THE1 THESEUS1, protein kinase family protein (.1) AT2G21480 515 / 1e-169 Malectin/receptor-like protein kinase family protein (.1) AT4G39110 511 / 6e-168 Malectin/receptor-like protein kinase family protein (.1) AT5G61350 506 / 1e-166 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G095900 [exp] 1625 / 0 AT3G51550 845 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.017G096600 [exp] 1590 / 0 AT3G51550 829 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.017G096800 [exp] 1447 / 0 AT3G51550 823 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.016G138700 [exp] 815 / 0 AT3G51550 1252 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.006G110000 [exp] 808 / 0 AT3G51550 1256 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.017G096400 [exp] 753 / 0 AT3G51550 451 / 6e-151 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.008G105500 [exp] 724 / 0 AT3G04690 999 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Potri.010G145600 [exp] 710 / 0 AT3G04690 1027 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Potri.013G042500 [exp] 666 / 0 AT3G04690 1036 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014185 [exp] 790 / 0 AT3G51550 1254 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10022728 [exp] 723 / 0 AT3G51550 1184 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10016907 [exp] 662 / 0 AT3G04690 967 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Lus10042537 [exp] 629 / 0 AT3G04690 942 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Lus10032976 [exp] 629 / 0 AT3G51550 682 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10021998 [exp] 625 / 0 AT3G04690 929 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Lus10003942 [exp] 600 / 0 AT3G51550 656 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10017478 [exp] 536 / 2e-177 AT4G39110 1149 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Lus10028140 [exp] 533 / 4e-177 AT3G46290 1024 / 0.0 hercules receptor kinase 1 (.1) Lus10042844 [exp] 532 / 1e-176 AT3G46290 1025 / 0.0 hercules receptor kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0202 [poplar] [flax] GBD PF11721 [poplar] [flax] Malectin Malectin domain
Representative CDS sequence Show only first row Show all	>Potri.017G096000.1 pacid=42814547 polypeptide=Potri.017G096000.1.p locus=Potri.017G096000 ID=Potri.017G096000.1.v4.1 annot-version=v4.1 ATGCATAGGTTTTCTTACTCCAATTTATTCCACAAAAGAAATAGCATAATGTCCATCTTCATCGCTCTCTACCTTCTCCCTCCCCTCCATCTCTTCCTCT ACGTTACTGCTACTACAGATTACTTGCTGCCATACAGCCCCACTGATCTAATACTCCTTAACTGTGGTGCATCCTCTAATTTGTCATCTCCAGATGGTCG CAGTTGGGATGGTGATTCCCAGTCTAAGTTTGCTGCCTCTAACCCCCCAGAAACCTCATCTGTGTTTGCAGCCTCCAATCAAGACCCCTCTGTCAACCAA GTCCCATACATGACAGCCCGTATTTTTCACTCTAAATTCACTTACACATTTCCAGTCTTGCCTGGCCCAAAATTTGTGCGTCTCTACTTTTATCCAGCTT CTTACTCAAATCTTGATATATCCACATCCTATTTCTCGCTTAGTGCCAATGACTACGAGCTACTAAACAACTTTAGTGCCTCTCTTACAGTTTCTGCTAT AATACCTCCAGTGGACTCCTTCACCAAAGAGTTCATCATCACCGTGTGGGACAACCAGAAGCTTGAATTAACCTTCATTCCGTCTCCAGCATCTTTTGCC TTCATTAATGGTATCGAAATCGTTTCCATGCCAGACAGCTTCTATGCTCGTGGCAATGATAATCCACTGACCTATGTGGGCACCGATCTCTTCTTCTATC TGGATAACACAACTGTGCTTGAGACAGTTTATCGACTGAATGTTGGGGGGAAAGATATCGGCAGCACAGGAGATACTGGCATGTACAGGACATGGCATCA AGATTCAGAGTATCTCCCTGGTGGACAAACTGGAAACACTCCATATCTCCCAGGCGTTAAGATAAAGTACACAACCAAAACGCCAAATTACTCCGCACCT GTTATGGTATATAGTACTATGCGTTCAATGGGTCCTGAACCACATCTTAACCTGAATTACAATCTCACCTGGATCTTCCCAGTTGATGCTGGTTTCCATT ATCTCCTTAGGCTCCACTTTTGTGAGACTCGGATGGAGATCAAAAATGAAAATCAACAGGTATTTTTAATATTCATCAACAATCAAACAGCAGAGCATGA TGCAGATGTGATCCATATGAGCGGTGGCAACGGCATTCCAGTTTACAAAGACTACATCGTGCAGGTCCCTCAAGGGAGCCAGAGCAAGCAGGACTTGTGG CTCGAACTACACCCTAACATGGAACTGAAACCTACTTGTGCTGATGCAATCTTGAATGGCTTGGAAATATTCAAGCTGAATAGAACAGATGGAAATCTAG CAGGATTCAACCCTGAGCCAACAGTGGCTCCTCCACCAGCAGAACAACATCCAAGTCTAAAAGAGAGAAGAACGGGCAAAAGATCATCAATACTTACGGT TATAGGCATCGTTGGAGGTTCCATAGGTGCAGTATTTGCTTGCTCTCTTATTCTTTATTTCTTTGCTTTCAAGCAGAAGCGAGTCAAGGACCCTAGCAAG AGTGAGGAAAAATCCTCCTGGACTCTAATATCACAAACATCTAGGTCCACGACTACAATCTCTCCATCACTACCTACTGATCTTTGCCGACGGTTTACTT TTTTCGAAATCAACGAAGCAACAGGAAACTTTGATGATCAAAATATTATTGGTTCAGGGGGGTTTGGTACTGTGTATAAAGGATACATTGAATACGGTTT CATCGCAGTAGCCATCAAACGACTAGATTCATCATCAAAGCAAGGGACACGTGAGTTCCAGACAGAGATTGAGATGTTATCCAATCTTCGCCACCTCCAT CTAGTGTCACTGATTGGATACTGTGATGATCATGGCGAGATGATCCTTGTATACGATTACATGTCAAGAGGCACTCTTAGAGAACATCTATACAAAACAA AGAGCTCTCCTCTTCCATGGAAGCAAAGGCTAGAAATATGCATTGGTGCTGCAAAAGGGTTGCATTATCTTCATTCAGGAGCAAAGCACACAATCATTCA CCGTGATGTGAAGTCAACAAACATATTGTTAGATGAGAATTGGGTGGCTAAGGTTTCAGATTTTGGGCTGTCCAGATTGGGTCCCACTAGTACATCCCAA ACCCATGTTAGCACTGTAGTTAGAGGTAGCATTGGATATGTGGATCCACAGTACTACCGTAGGCAACACCTAACAGAGAAATCTGATGTTTATTCATTCG GTGTGGTTTTGTTTGAGGTGCTATGTGCAAGGCCACCAGTAATTCCAAGTTCACCGAAAGATCAAGCAAGCTTAGCTGACTGGGCAAGAAAGTGTTACCA TAGAGGAACCCTTGATCAGATCGTGGATCCACATTTAAAGGGCGAGGTTGCCCCTGTCTCTTTAAATAAGTTTGCAGAGATTGCTAACAGTTGCTTACAT GTTCAAGGAATTGAACGCCCAAAAATGGGTGATGTCGTTTGGGGCCTTGAATTTGCATTGCAGCTTCAACAAAGTGCTGAGAAAAATGGCAACAGTGTAG ATGGGATCAATATGGAAAATAAAAGCTCATTATCACCACATCGAGATGTCATGACCACTGATGACGATGACATGTTTAGTGGAGCCGAGTCACATTCAAG GAGCACAGTTAGCACTCATGAAAGTATCACTCAAAGTGATCCAGATCAAAGAGCAAGGGGTGTGTTTTCTGAAATAATTGACCCAAAGGCAAGATGA
AA sequence Show only first row Show all	>Potri.017G096000.1 pacid=42814547 polypeptide=Potri.017G096000.1.p locus=Potri.017G096000 ID=Potri.017G096000.1.v4.1 annot-version=v4.1 MHRFSYSNLFHKRNSIMSIFIALYLLPPLHLFLYVTATTDYLLPYSPTDLILLNCGASSNLSSPDGRSWDGDSQSKFAASNPPETSSVFAASNQDPSVNQ VPYMTARIFHSKFTYTFPVLPGPKFVRLYFYPASYSNLDISTSYFSLSANDYELLNNFSASLTVSAIIPPVDSFTKEFIITVWDNQKLELTFIPSPASFA FINGIEIVSMPDSFYARGNDNPLTYVGTDLFFYLDNTTVLETVYRLNVGGKDIGSTGDTGMYRTWHQDSEYLPGGQTGNTPYLPGVKIKYTTKTPNYSAP VMVYSTMRSMGPEPHLNLNYNLTWIFPVDAGFHYLLRLHFCETRMEIKNENQQVFLIFINNQTAEHDADVIHMSGGNGIPVYKDYIVQVPQGSQSKQDLW LELHPNMELKPTCADAILNGLEIFKLNRTDGNLAGFNPEPTVAPPPAEQHPSLKERRTGKRSSILTVIGIVGGSIGAVFACSLILYFFAFKQKRVKDPSK SEEKSSWTLISQTSRSTTTISPSLPTDLCRRFTFFEINEATGNFDDQNIIGSGGFGTVYKGYIEYGFIAVAIKRLDSSSKQGTREFQTEIEMLSNLRHLH LVSLIGYCDDHGEMILVYDYMSRGTLREHLYKTKSSPLPWKQRLEICIGAAKGLHYLHSGAKHTIIHRDVKSTNILLDENWVAKVSDFGLSRLGPTSTSQ THVSTVVRGSIGYVDPQYYRRQHLTEKSDVYSFGVVLFEVLCARPPVIPSSPKDQASLADWARKCYHRGTLDQIVDPHLKGEVAPVSLNKFAEIANSCLH VQGIERPKMGDVVWGLEFALQLQQSAEKNGNSVDGINMENKSSLSPHRDVMTTDDDDMFSGAESHSRSTVSTHESITQSDPDQRARGVFSEIIDPKAR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Potri.017G096000 [exp]	0	1
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Potri.017G095900 [exp]	2.00	0.9814
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Potri.017G096600 [exp]	2.44	0.9669
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Potri.017G096800 [exp]	4.00	0.9628
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Potri.017G095566 [exp]	8.77	0.9328
AT5G38260			Protein kinase superfamily pro...		Potri.010G121350 [exp]	9.38	0.9292
AT2G03340	WRKY	WRKY3	WRKY DNA-binding protein 3 (.1...		Potri.008G091900 [exp]	9.79	0.9285	WRKY3.1
AT1G68940			Armadillo/beta-catenin-like re...		Potri.003G201000 [exp]	12.72	0.9083
AT2G25410			RING/U-box superfamily protein...		Potri.003G080200 [exp]	13.07	0.9301
AT4G23200		CRK12	cysteine-rich RLK (RECEPTOR-li...		Potri.018G111700 [exp]	14.14	0.9390
AT4G33090		ATAPM1, APM1	aminopeptidase M1 (.1)		Potri.017G039200 [exp]	14.49	0.9362

Compare expression of checked genes

Potri.017G096000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.