Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51550 449 / 4e-150 FER FERONIA, Malectin/receptor-like protein kinase family protein (.1) AT5G39000 422 / 3e-140 Malectin/receptor-like protein kinase family protein (.1) AT3G04690 417 / 1e-138 ANX1 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) AT5G28680 417 / 3e-138 ANX2 ANXUR2, Malectin/receptor-like protein kinase family protein (.1) AT5G38990 415 / 2e-137 Malectin/receptor-like protein kinase family protein (.1) AT5G54380 380 / 2e-124 THE1 THESEUS1, protein kinase family protein (.1) AT2G21480 375 / 8e-122 Malectin/receptor-like protein kinase family protein (.1) AT4G39110 372 / 1e-120 Malectin/receptor-like protein kinase family protein (.1) AT5G61350 371 / 1e-120 Protein kinase superfamily protein (.1) AT3G46290 369 / 3e-120 HERK1 hercules receptor kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G096000 [exp] 717 / 0 AT3G51550 832 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.017G095900 [exp] 714 / 0 AT3G51550 845 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.017G096600 [exp] 714 / 0 AT3G51550 829 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.017G096800 [exp] 631 / 0 AT3G51550 823 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.016G138700 [exp] 449 / 2e-150 AT3G51550 1252 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.006G110000 [exp] 448 / 5e-150 AT3G51550 1256 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.010G145600 [exp] 421 / 5e-140 AT3G04690 1027 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Potri.008G105500 [exp] 420 / 2e-139 AT3G04690 999 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Potri.005G055200 [exp] 419 / 7e-139 AT5G28680 1026 / 0.0 ANXUR2, Malectin/receptor-like protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022728 [exp] 445 / 4e-149 AT3G51550 1184 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10014185 [exp] 444 / 2e-148 AT3G51550 1254 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10016907 [exp] 421 / 9e-140 AT3G04690 967 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Lus10042537 [exp] 413 / 3e-137 AT3G04690 942 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Lus10021998 [exp] 412 / 6e-137 AT3G04690 929 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Lus10032971 [exp] 409 / 2e-134 AT3G51550 706 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10032976 [exp] 406 / 1e-133 AT3G51550 682 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10003942 [exp] 392 / 1e-128 AT3G51550 656 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10038595 [exp] 371 / 2e-126 AT5G54380 718 / 0.0 THESEUS1, protein kinase family protein (.1) Lus10028805 [exp] 379 / 4e-123 AT4G39110 1139 / 0.0 Malectin/receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.017G096400.2 pacid=42813007 polypeptide=Potri.017G096400.2.p locus=Potri.017G096400 ID=Potri.017G096400.2.v4.1 annot-version=v4.1 ATGGTTATAGGCATCGTTGGAGGTTCCATAGGTGCAGTATTTGCTTTATCTCTTATTCTTTATTTCTTCGCTTTCAAGCAGAAGCGAGTCAAGGACCCTA GCAAGAGTGAGGAAAAATCCTCCTGGACTATAATATCACAAACATCTAGGTCCACGACTACAATCTCTTCATCACTACCTACTGATCTTTGCCGACGGTT TACATTTGTTGAAATCAAAGAAGCAACAAGAAACTTTGATGATCAAAATATTATTGGTTCAGGGGGATTTGGCACTGTGTATAAAGGATACATTGAATAC GGTTTCATCGCTGTAGCCATCAAACGACTAGATTCATCATCAAAGCAAGGGACACGTGAGTTCCAGACAGAGATTGAGATGTTATCCAATCTTCGCCACC TCCATCTAGTGTCACTGATTGGATACTGTGATGATCATGGCGAGATGATCCTTGTATACGATTACATGTCAAGAGGCACTCTTAGAGAACATCTATACAA AACAAAGAGCTCTCCTCTTCCATGGAAGCAAAGGCTAGAAATATGCATCGGTGCTGCAAAAGGGTTGCATTATCTTCATTCAGGAGCAAAGCACACAATC ATTCACCGTGATGTGAAGTCAACAAACATATTGTTAGATGAGAATTGGGTGGCTAAGGTTTCAGATTTTGGGCTGTCCAGATTGGGTCCCACTAGTACAT CCCAAACGCATGTTAGCACTGTAGTTAGAGGTAGCATTGGATATGTGGATCCAGAGTACTACCGTAGGCAACACCTAACGGAGAAATCTGATGTTTATTC ATTCGGTGTGGTTTTGTTTGAGGTGCTATGTGCAAGGCCACCAGTGATTCCAAGTTCACCGAAAGATCAAGCAAGCTTAGCTGAGTGGGCACGAAAATGT TACCAAAGAGGAACCCTTGATGAGATCGTGGATCCACATTTAAAGGGCGAGGTTGCCCCTGTCTCTTTAAATAAGTTTGCAGAGATTGCTAACAGTTGCT TACATGGTCAAGGAATTGAACGCCCTAAAATGGGTGATGTCGTTTGGGGCCTTGAATTTGCGTTGCAGCTTCAACAATCTGCTGAGAAAAATGCCAAAAG TGTAGACGGGATCAATATGGAAAATAAAAGCTCATTTTCACCACATCGAGATGTCATGACCACTGATGACGATGACATGTTTAGTGGAGCGGAGTCACAT TCAAGGAGCACAGTTAGCACTCGTGAAAGTGTCACCCAAAGTGATCCAGATCAAAGAGCAAGGGGTGTGTTTTCTGAAATAATTGACCCAAAGGCAAGAT GA
AA sequence Show only first row Show all	>Potri.017G096400.2 pacid=42813007 polypeptide=Potri.017G096400.2.p locus=Potri.017G096400 ID=Potri.017G096400.2.v4.1 annot-version=v4.1 MVIGIVGGSIGAVFALSLILYFFAFKQKRVKDPSKSEEKSSWTIISQTSRSTTTISSSLPTDLCRRFTFVEIKEATRNFDDQNIIGSGGFGTVYKGYIEY GFIAVAIKRLDSSSKQGTREFQTEIEMLSNLRHLHLVSLIGYCDDHGEMILVYDYMSRGTLREHLYKTKSSPLPWKQRLEICIGAAKGLHYLHSGAKHTI IHRDVKSTNILLDENWVAKVSDFGLSRLGPTSTSQTHVSTVVRGSIGYVDPEYYRRQHLTEKSDVYSFGVVLFEVLCARPPVIPSSPKDQASLAEWARKC YQRGTLDEIVDPHLKGEVAPVSLNKFAEIANSCLHGQGIERPKMGDVVWGLEFALQLQQSAEKNAKSVDGINMENKSSFSPHRDVMTTDDDDMFSGAESH SRSTVSTRESVTQSDPDQRARGVFSEIIDPKAR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Potri.017G096400 [exp]	0	1
AT4G16480		ATINT4	inositol transporter 4 (.1)		Potri.006G015300 [exp]	5.65	0.8341
AT4G14840			unknown protein		Potri.008G153800 [exp]	7.74	0.8238
AT4G10170			SNARE-like superfamily protein...		Potri.003G048600 [exp]	8.06	0.7788
AT1G08230		ATGAT1	L-GAMMA-AMINOBUTYRIC ACID TRAN...		Potri.008G026600 [exp]	8.06	0.8466
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Potri.002G120600 [exp]	10.39	0.8216
AT5G45040		CYTC6A	cytochrome c6A, Cytochrome c (...		Potri.015G121101 [exp]	11.13	0.8554
AT1G16310			Cation efflux family protein (...		Potri.010G172600 [exp]	11.35	0.7948
AT3G51430		SSL5, YLS2	YELLOW-LEAF-SPECIFIC GENE 2, S...		Potri.006G140500 [exp]	12.00	0.8798
AT5G49760			Leucine-rich repeat protein ki...		Potri.004G231500 [exp]	16.24	0.8384
AT1G01140		PKS6, CIPK9, Sn...	SNF1-RELATED PROTEIN KINASE 3....		Potri.014G104200 [exp]	17.32	0.8278	CIPK9.2

Compare expression of checked genes

Potri.017G096400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.