Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51550 829 / 0 FER FERONIA, Malectin/receptor-like protein kinase family protein (.1) AT5G39000 819 / 0 Malectin/receptor-like protein kinase family protein (.1) AT5G38990 775 / 0 Malectin/receptor-like protein kinase family protein (.1) AT5G28680 670 / 0 ANX2 ANXUR2, Malectin/receptor-like protein kinase family protein (.1) AT3G04690 669 / 0 ANX1 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) AT5G54380 509 / 1e-167 THE1 THESEUS1, protein kinase family protein (.1) AT5G59700 504 / 5e-166 Protein kinase superfamily protein (.1) AT5G39030 475 / 8e-155 Protein kinase superfamily protein (.1) AT5G39020 464 / 1e-150 Malectin/receptor-like protein kinase family protein (.1) AT5G61350 370 / 2e-114 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G096000 [exp] 1591 / 0 AT3G51550 832 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.017G095900 [exp] 1549 / 0 AT3G51550 845 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.017G096800 [exp] 1464 / 0 AT3G51550 823 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.016G138700 [exp] 815 / 0 AT3G51550 1252 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.006G110000 [exp] 809 / 0 AT3G51550 1256 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.017G096400 [exp] 742 / 0 AT3G51550 451 / 6e-151 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.008G105500 [exp] 729 / 0 AT3G04690 999 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Potri.010G145600 [exp] 720 / 0 AT3G04690 1027 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Potri.013G042500 [exp] 672 / 0 AT3G04690 1036 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014185 [exp] 792 / 0 AT3G51550 1254 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10022728 [exp] 729 / 0 AT3G51550 1184 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10016907 [exp] 668 / 0 AT3G04690 967 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Lus10032976 [exp] 640 / 0 AT3G51550 682 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10042537 [exp] 625 / 0 AT3G04690 942 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Lus10028140 [exp] 528 / 7e-175 AT3G46290 1024 / 0.0 hercules receptor kinase 1 (.1) Lus10042844 [exp] 525 / 6e-174 AT3G46290 1025 / 0.0 hercules receptor kinase 1 (.1) Lus10037887 [exp] 496 / 5e-162 AT5G54380 1279 / 0.0 THESEUS1, protein kinase family protein (.1) Lus10039274 [exp] 460 / 1e-148 AT5G24010 997 / 0.0 Protein kinase superfamily protein (.1) Lus10027509 [exp] 453 / 2e-146 AT5G24010 996 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.017G096600.1 pacid=42813304 polypeptide=Potri.017G096600.1.p locus=Potri.017G096600 ID=Potri.017G096600.1.v4.1 annot-version=v4.1 ATGCATAGGTTTTCTTACTCCAATTTATTCCACAAAAGAAATAGCACAATGTCCATCTTCATCGCTCTCTACCTTCTCCCTCCCCTCCATCTCTTCCTCT ACGTTACTGCTACTACAGATTACTTGCAGCGATACAGCCCCAGTACTGATCTAATACTCCTTAACTGTGGTGCATCCTCTAATTTGTCATCTCCAGATGG TCGTGGTTGGGATGGTGATTCCCAGTCTAAGTTTGCTGCCTCTAACCCCCCAGAAGCCTCATCTGTGTTTGCAGCCTCCAATCAAGACCCCTCTGTCAAC CAAGTCCCATACATGACAGCCCGTATTTTTCACTCTAAATTCACTTACACATTTCCAGTCTTGCCTGGCCCAAAATTTGTGCGTCTCTACTTTTATCCAG CTTCTTACTCAAATCTTGATATATCCACATCCTATTTTTCTATTAGGGCCAATAACTACCAGCTACTAAACAACTTTAGTGCCTCTCTTACAGTTTCTGC TATAATACCTCCAGTTGACTACTTCACCAAAGAGTTCATCATCACCGTGAGGGACAACCAGAAGCTTGAATTAACCTTCATTCCGTCTCCAGCATCTTTT TCCTTCATTAATGGTATCGAAATCGTTTCCATGCCAGACAGCTTCTATGCTCGTGGCGATGATAATCCACCGACCTATGTGGGCACCGATAACCCCTGCT CTCTGTATAACACAACTGCGCTTGAGACAGTTTATCGACTGAATGTTGGGGGGCAAGATATCGGCAGCACAGGAGATACGGGCATGTACAGGACATGGCA TCAAGATTCAGAGTATCTCTTTGGACAAGCTGGAAACACTCCATATCTCCCAGGCGTTAAGATAAAGTACACAACCAAAACGCCAGCTTACTCTGCACCT GTTATGGTATATAGTACTATGCGTTCAATGGGTCCTGAACCACGTCTTAACATGAATTACAATCTCACATGGATCTTCCCAGTTGATGCTGGTTTCCTTT ATCTCCTTAGACTCCACTTTTGTGAGACTCGAATGGAGTTCAAAAATGAAAATCAACAGGTATTTTTAATATTCATCAACAATCAAACAGCAGAGCATGA TGCAGATGTGATCCATATGAGCGGTGGCAACGGCATTCCAGTTTACAAAGACTACATCGTGCTGGTCCCTCCAGGGAGCCAGAGCAAGCAGGATTTGTGG CTCGAACTACACCCTAACATGGAACTGAAACCTACTTATGCTGATGCAATCTTGAATGGCTTGGAAATATTCAAGCTGAATACAACAGATGGAAATCTTG CAGGATTCAACCCTGAGCCAACAGTGGCTCCTCCACCAGCAGAACAACATCCAGAGAGAAGAACGGGCAAAAGATCATCAATACTTACGGTTATAGGCAT CGTTGGAGGTTCCATAGGTGCAGTATTTGCTTGCTCTCTTATTCTTTATTTCTTTGCTTTCAAGCAGAAGCGAGTCAAGGACCCTAGCAAGAGTGAGGAA AAATCCTCCTGGACTATAATATCACAAACATCTAGGTCCACGACTACAATCTCTCCATCACTACCTACTGATCTTTGCCGACGGTTTACATTTTTCGAAA TCAACGAAGCAACAGGAAACTTTGATGATCAAAATATTATTGGTTCAGGGGGATTTGGTACTGTGTATAAAGCATACATTGAATACGGTTTCATCGCAGT AGCCATCAAACGACTAGATTCATCATCAAAGCAAGGGACACGTGAGTTCCAGACAGAGATTGAGATGTTATCCAATCTTCGCCACCTCCATCTAGTGTCA CTGATTGGATACTGTGATGATCATGGCGAGATGATCCTTGTATACGATTACATGTCAAGAGGCACCCTAAGAGAACATCTATACAAAACAAAGAGCTCTC CTCTTCCATGGAAGCAAAGGCTAGAAATATGCATTGGTGCTGCAAAAGGGTTGCATTATCTTCATTCAGGAGCAAAGCACACAATCATTCATCGTGATGT GAAGTCAACAAACATATTGTTAGATGAGAATTGGGTGGCTAAGGTTTCAGATTTTGGGCTGTCCAGATTGGGTCCCACTAGTACATCCCAAACCCATGTT AGCACTGTAGTTAGAGGTAGCATTGGATATGTGGATCCAGAGTACTACCGTAGGCAACACGTAACAGAGAAATCTGATGTTTATTCATTCGGTGTGGTTT TGTTTGAGGTGCTATGTGCAAGGCCACCAGTGATTCCAAGTTCACCGAAAGACCAAGCAAGCTTAGCTGAGTGGGCACGAAGATGTTACCAAAGAGGAAC CCTTGATCAGATCGTGGATCCACATTTAAAGGGCGAGGTTGCCTCTGTCTCTTTAAATAAGTTTGCAGAGATTGCTAACAGTTGCTTACATGTTCAAGGA ATTGAACGCCCAAAAATGGGTGATGTCGTTTGGGGCCTTGAATTTGCATTGCAGCTTCAACAAACTGCTGAGAAAAATGGCAACAGTGTAGATGGGATCA ATATGGAAAATAAAAGCTCATTATCACCACATCGAGATGTCATGACCACTGATGACGATGACATGTTTAGTGGAGCAGAGTCACATTCAAGGAGCACAGT TAGCACTCATGAAAGTGTCACCCAAAGTGATCCAGATCAAAGAGCAAGGGGTGTGTTTTCTGAAATAATGGACCCAAAGGCAAGATGA
AA sequence Show only first row Show all	>Potri.017G096600.1 pacid=42813304 polypeptide=Potri.017G096600.1.p locus=Potri.017G096600 ID=Potri.017G096600.1.v4.1 annot-version=v4.1 MHRFSYSNLFHKRNSTMSIFIALYLLPPLHLFLYVTATTDYLQRYSPSTDLILLNCGASSNLSSPDGRGWDGDSQSKFAASNPPEASSVFAASNQDPSVN QVPYMTARIFHSKFTYTFPVLPGPKFVRLYFYPASYSNLDISTSYFSIRANNYQLLNNFSASLTVSAIIPPVDYFTKEFIITVRDNQKLELTFIPSPASF SFINGIEIVSMPDSFYARGDDNPPTYVGTDNPCSLYNTTALETVYRLNVGGQDIGSTGDTGMYRTWHQDSEYLFGQAGNTPYLPGVKIKYTTKTPAYSAP VMVYSTMRSMGPEPRLNMNYNLTWIFPVDAGFLYLLRLHFCETRMEFKNENQQVFLIFINNQTAEHDADVIHMSGGNGIPVYKDYIVLVPPGSQSKQDLW LELHPNMELKPTYADAILNGLEIFKLNTTDGNLAGFNPEPTVAPPPAEQHPERRTGKRSSILTVIGIVGGSIGAVFACSLILYFFAFKQKRVKDPSKSEE KSSWTIISQTSRSTTTISPSLPTDLCRRFTFFEINEATGNFDDQNIIGSGGFGTVYKAYIEYGFIAVAIKRLDSSSKQGTREFQTEIEMLSNLRHLHLVS LIGYCDDHGEMILVYDYMSRGTLREHLYKTKSSPLPWKQRLEICIGAAKGLHYLHSGAKHTIIHRDVKSTNILLDENWVAKVSDFGLSRLGPTSTSQTHV STVVRGSIGYVDPEYYRRQHVTEKSDVYSFGVVLFEVLCARPPVIPSSPKDQASLAEWARRCYQRGTLDQIVDPHLKGEVASVSLNKFAEIANSCLHVQG IERPKMGDVVWGLEFALQLQQTAEKNGNSVDGINMENKSSLSPHRDVMTTDDDDMFSGAESHSRSTVSTHESVTQSDPDQRARGVFSEIMDPKAR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Potri.017G096600 [exp]	0	1
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Potri.017G096800 [exp]	1.00	0.9744
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Potri.017G096000 [exp]	2.44	0.9669
AT1G66920			Protein kinase superfamily pro...		Potri.017G117065 [exp]	3.46	0.9559
AT5G03430			phosphoadenosine phosphosulfat...		Potri.006G123000 [exp]	5.09	0.9437
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Potri.017G095900 [exp]	6.00	0.9444
AT3G13540	MYB	ATMYB5, ATM2	myb domain protein 5 (.1)		Potri.013G056500 [exp]	6.32	0.9512
AT5G38260			Protein kinase superfamily pro...		Potri.017G034500 [exp]	6.32	0.9481
AT5G23670		ATLCB2, LCB2	long chain base2 (.1.2)		Potri.015G103800 [exp]	7.74	0.9509	LJLCB2.1
AT4G28600		NPGR2	no pollen germination related ...		Potri.002G259300 [exp]	8.71	0.9379
AT4G23200		CRK12	cysteine-rich RLK (RECEPTOR-li...		Potri.018G111700 [exp]	10.58	0.9489

Compare expression of checked genes

Potri.017G096600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.