Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G29770 464 / 1e-163 ATMES11 ARABIDOPSIS THALIANA METHYL ESTERASE 11, methyl esterase 11 (.1) AT1G69240 402 / 2e-138 RHS9, ATMES15 ROOT HAIR SPECIFIC 9, ARABIDOPSIS THALIANA METHYL ESTERASE 15, methyl esterase 15 (.1) AT1G26360 400 / 7e-138 ATMES13, SP1L1 ARABIDOPSIS THALIANA METHYL ESTERASE 13, methyl esterase 13 (.1) AT4G09900 300 / 8e-100 ATMES12 ARABIDOPSIS THALIANA METHYL ESTERASE 12, methyl esterase 12 (.1) AT1G33990 298 / 5e-99 ATMES14 methyl esterase 14 (.1) AT5G58310 181 / 8e-55 ATMES18 ARABIDOPSIS THALIANA METHYL ESTERASE 18, methyl esterase 18 (.1) AT3G10870 176 / 2e-52 ATMES17, MES17 ARABIDOPSIS THALIANA METHYL ESTERASE 17, methyl esterase 17 (.1) AT2G23560 171 / 5e-51 ATMES7 ARABIDOPSIS THALIANA METHYL ESTERASE 7, methyl esterase 7 (.1) AT4G16690 169 / 4e-50 ATMES16 ARABIDOPSIS THALIANA METHYL ESTERASE 16, methyl esterase 16 (.1) AT2G23610 160 / 8e-47 ATMES3 ARABIDOPSIS THALIANA METHYL ESTERASE 3, methyl esterase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G116500 [exp] 655 / 0 AT3G29770 499 / 1e-177 ARABIDOPSIS THALIANA METHYL ESTERASE 11, methyl esterase 11 (.1) Potri.008G096900 [exp] 394 / 4e-136 AT1G26360 379 / 2e-129 ARABIDOPSIS THALIANA METHYL ESTERASE 13, methyl esterase 13 (.1) Potri.013G104700 [exp] 321 / 6e-108 AT4G09900 541 / 0.0 ARABIDOPSIS THALIANA METHYL ESTERASE 12, methyl esterase 12 (.1) Potri.019G077400 [exp] 318 / 4e-107 AT4G09900 547 / 0.0 ARABIDOPSIS THALIANA METHYL ESTERASE 12, methyl esterase 12 (.1) Potri.007G036700 [exp] 185 / 3e-56 AT2G23610 244 / 8e-81 ARABIDOPSIS THALIANA METHYL ESTERASE 3, methyl esterase 3 (.1) Potri.007G036800 [exp] 186 / 1e-55 AT2G23560 230 / 2e-74 ARABIDOPSIS THALIANA METHYL ESTERASE 7, methyl esterase 7 (.1) Potri.009G107500 [exp] 173 / 3e-51 AT3G50440 240 / 1e-78 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Potri.009G107200 [exp] 172 / 1e-50 AT3G50440 244 / 4e-80 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Potri.019G131100 [exp] 169 / 5e-50 AT3G10870 323 / 9e-112 ARABIDOPSIS THALIANA METHYL ESTERASE 17, methyl esterase 17 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013193 [exp] 546 / 0 AT3G29770 493 / 8e-175 ARABIDOPSIS THALIANA METHYL ESTERASE 11, methyl esterase 11 (.1) Lus10030707 [exp] 538 / 0 AT3G29770 494 / 4e-175 ARABIDOPSIS THALIANA METHYL ESTERASE 11, methyl esterase 11 (.1) Lus10037068 [exp] 367 / 1e-125 AT1G69240 365 / 5e-124 ROOT HAIR SPECIFIC 9, ARABIDOPSIS THALIANA METHYL ESTERASE 15, methyl esterase 15 (.1) Lus10036917 [exp] 349 / 3e-114 AT1G26370 650 / 0.0 RNA helicase family protein (.1) Lus10003511 [exp] 313 / 6e-105 AT4G09900 526 / 0.0 ARABIDOPSIS THALIANA METHYL ESTERASE 12, methyl esterase 12 (.1) Lus10005298 [exp] 313 / 8e-105 AT4G09900 541 / 0.0 ARABIDOPSIS THALIANA METHYL ESTERASE 12, methyl esterase 12 (.1) Lus10009489 [exp] 261 / 6e-86 AT4G09900 378 / 2e-132 ARABIDOPSIS THALIANA METHYL ESTERASE 12, methyl esterase 12 (.1) Lus10029011 [exp] 175 / 6e-52 AT3G10870 293 / 1e-99 ARABIDOPSIS THALIANA METHYL ESTERASE 17, methyl esterase 17 (.1) Lus10034253 [exp] 173 / 3e-51 AT3G10870 288 / 1e-97 ARABIDOPSIS THALIANA METHYL ESTERASE 17, methyl esterase 17 (.1) Lus10015532 [exp] 172 / 5e-51 AT2G23600 240 / 2e-79 ARABIDOPSIS THALIANA METHYL ESTERASE 2, ARABIDOPSIS METHYL ESTERASE 8, acetone-cyanohydrin lyase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF00561 [poplar] [flax] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Potri.017G096900.1 pacid=42813401 polypeptide=Potri.017G096900.1.p locus=Potri.017G096900 ID=Potri.017G096900.1.v4.1 annot-version=v4.1 ATGGGCAACCTATGCACTTGTTTCTCTCCCAAAACTCCTGTAAAAAACAAGAAACCCACAAAACGTTTACAGGGTAACCCGCAAACCGCACCCAATTCAA GCAACAGGTGGACCCGGATCCGATCAACCCGTAAAGACAACCATGATGAATTGATTCACGAACATGCTTTAGCTGCAGCAATTCTGTTTAGGCAGCACCA GCAACAAAACGGTTCCGCTTCCGGGTCATTTCCTTTTGATCGCTCCGTTTCTTTAAGACACCCGAACGGTTCTGGGTCAAAGAAGAGCCAGTTGCCTCGG AGCTCTAGTTCTCGAGCCCGGTCACTTACTGACCCGTTATTGCAGCCTCATCAGCTTGTTAACCAGGATATTAAGCTTGATGATCTTGAGACCAACCACT TTGTCCTTGTCCATGGAGGTGGCTTTGGTGCCTGGTGTTGGTATAAAACTATAGCACTTCTAGAAGAGGGTGGTTTCAAAGTTACTGCCGTGGACTTAAC TGGTTCTGGCATTCATTCTTTTGATACAAATGGCATCACCAGTCTTTCTCAATATGTGAAGCCTCTTACTGATTTTCTTGACAAGCTGGTTGATGGGGAG AAGACAATATTGGTGGGCCATGACTTTGGTGGTGCTTGTATATCATATGCAATGGAGTTGTTTCCTCATAAAGTTTCAAAGGCTATTTTTGTTGCTGCGG CAATGTTGACTAATGGACAAAGTACTCTTGATATGTTCTCCCAGAAGGCGGCAGGTTCGAGTGATTTAATGCAGCAGGCACAAATATTTGTGTATGCAAA TGGGAATAATAATCCTCCAACTGCCATTAATCTGGACAAGTCAATATTGAGAGATTTGTTGTTCAATCAAAGTCCTGGCAAGGATGTAGCATTGGCATCT GTTTCAATTAGACCAATTCCCTTTCCACCGGTTTTGGAGAAGCTGAGTCTTTCTGACTTGAAGTATGGAACTGTGAGGAGGTTTTATATAGAGACTCCTG AAGATAATGCCATACCTATCACATTACAGGAAAGCATGATAAACTCAAGTCCCCCAGAAAAAGTATTTCGTTTAAAAGGTGCTGATCACTCGCCTTTTTT CTCTAAGCCACAAGCCCTGCACAAGTTATTGGTAGAGATATCGAAGATCCCATCAACTTGA
AA sequence Show only first row Show all	>Potri.017G096900.1 pacid=42813401 polypeptide=Potri.017G096900.1.p locus=Potri.017G096900 ID=Potri.017G096900.1.v4.1 annot-version=v4.1 MGNLCTCFSPKTPVKNKKPTKRLQGNPQTAPNSSNRWTRIRSTRKDNHDELIHEHALAAAILFRQHQQQNGSASGSFPFDRSVSLRHPNGSGSKKSQLPR SSSSRARSLTDPLLQPHQLVNQDIKLDDLETNHFVLVHGGGFGAWCWYKTIALLEEGGFKVTAVDLTGSGIHSFDTNGITSLSQYVKPLTDFLDKLVDGE KTILVGHDFGGACISYAMELFPHKVSKAIFVAAAMLTNGQSTLDMFSQKAAGSSDLMQQAQIFVYANGNNNPPTAINLDKSILRDLLFNQSPGKDVALAS VSIRPIPFPPVLEKLSLSDLKYGTVRRFYIETPEDNAIPITLQESMINSSPPEKVFRLKGADHSPFFSKPQALHKLLVEISKIPST

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G29770		ATMES11	ARABIDOPSIS THALIANA METHYL ES...		Potri.017G096900 [exp]	0	1
AT4G19550			zinc ion binding;transcription...		Potri.001G082800 [exp]	1.73	0.8700
AT5G03890			unknown protein		Potri.015G005700 [exp]	17.02	0.8739
					Potri.001G100550 [exp]	23.10	0.7718
AT2G27260			Late embryogenesis abundant (L...		Potri.009G019800 [exp]	26.53	0.7740
AT5G54830			DOMON domain-containing protei...		Potri.006G262300 [exp]	27.34	0.7683
AT1G26190			Phosphoribulokinase / Uridine ...		Potri.008G110500 [exp]	29.52	0.7520
AT1G74310		HOT1, ATHSP101	heat shock protein 101 (.1)		Potri.015G056900 [exp]	29.59	0.8602	Pt-ATHSP101.1
AT5G59720		HSP18.2 HSP18.1...	heat shock protein 18.2 (.1)		Potri.010G195700 [exp]	32.48	0.8597	Pt-HSP18.4
AT3G12580		ATHSP70, HSP70	ARABIDOPSIS HEAT SHOCK PROTEIN...		Potri.001G042700 [exp]	37.14	0.8585	Pt-HSP70.10
AT5G03730		AtCTR1, SIS1, C...	SUGAR-INSENSITIVE 1, CONSTITUT...		Potri.006G115800 [exp]	38.60	0.7056

Compare expression of checked genes

Potri.017G096900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.