Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51550 506 / 3e-168 FER FERONIA, Malectin/receptor-like protein kinase family protein (.1) AT5G39000 437 / 3e-142 Malectin/receptor-like protein kinase family protein (.1) AT5G38990 435 / 4e-141 Malectin/receptor-like protein kinase family protein (.1) AT5G28680 416 / 3e-134 ANX2 ANXUR2, Malectin/receptor-like protein kinase family protein (.1) AT3G04690 414 / 1e-133 ANX1 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) AT5G39030 275 / 2e-81 Protein kinase superfamily protein (.1) AT5G39020 262 / 1e-76 Malectin/receptor-like protein kinase family protein (.1) AT5G54380 229 / 3e-64 THE1 THESEUS1, protein kinase family protein (.1) AT1G30570 222 / 7e-62 HERK2 hercules receptor kinase 2 (.1) AT3G46290 216 / 6e-60 HERK1 hercules receptor kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G095566 [exp] 672 / 0 AT3G51550 270 / 2e-81 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.006G110000 [exp] 514 / 9e-172 AT3G51550 1256 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.016G138700 [exp] 513 / 3e-171 AT3G51550 1252 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.017G096000 [exp] 501 / 3e-166 AT3G51550 832 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.017G095900 [exp] 487 / 6e-161 AT3G51550 845 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.017G096600 [exp] 480 / 2e-158 AT3G51550 829 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.017G096800 [exp] 464 / 8e-153 AT3G51550 823 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.008G105500 [exp] 463 / 2e-152 AT3G04690 999 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Potri.010G145600 [exp] 448 / 1e-146 AT3G04690 1027 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032976 [exp] 532 / 2e-178 AT3G51550 682 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10032971 [exp] 532 / 2e-178 AT3G51550 706 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10003942 [exp] 516 / 2e-172 AT3G51550 656 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10014185 [exp] 496 / 2e-164 AT3G51550 1254 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10022728 [exp] 432 / 2e-140 AT3G51550 1184 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10016907 [exp] 394 / 1e-125 AT3G04690 967 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Lus10021998 [exp] 384 / 3e-122 AT3G04690 929 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Lus10042537 [exp] 383 / 5e-122 AT3G04690 942 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Lus10028140 [exp] 336 / 7e-104 AT3G46290 1024 / 0.0 hercules receptor kinase 1 (.1) Lus10042844 [exp] 335 / 2e-103 AT3G46290 1025 / 0.0 hercules receptor kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0202 [poplar] [flax] GBD PF11721 [poplar] [flax] Malectin Malectin domain
Representative CDS sequence Show only first row Show all	>Potri.017G097001.1 pacid=42813220 polypeptide=Potri.017G097001.1.p locus=Potri.017G097001 ID=Potri.017G097001.1.v4.1 annot-version=v4.1 ATGAGTAGCAGCAGCAGCAGCAAATATCTCTCTCTCACAAACTCATCTTTATTCACACCTCTGCACCTCTCCTTCCTGTTCCTCCATCTCACCATCCTTG TAACCGGGGATTTACCACCACCTTACGTCCCTCTCGATAGCATAGCGCTTGATTGTGGTTCATCCGCCAATAGTGTTGGAAACGTTGGGCAATGGACTGC AGACATCAACTCAAGAGTGGCCCTTCTAGATCAAAACAACCTCTCAACACATCCCACAGAAAATGTAGCCTCCACTAGCTTTGTACCTTATTATACTGCT CGCGTCTCTCTCTCCCAATTCACCTACACGTTTCGTGTCAACAAAACAGGACCTAAGTTTGTTCGCCTCCATTTTAATCCTGCTTCCTACACTGCTTTTG GGTTGAGATGGTTCTTTGACAGTTTCAACAGGTCTAAAGCATCTTTTTCTGTCACATCCGGTCGCTACACCTTTCTTAGCAACTTCAGTGGCTTCCATTA CACTGACCCTCTTGGTGAACGAAGTTACGCCAGAGAATTCATCTTAAATGTTGAAGGTGAGCAGAAAAATTTGAGCATAACGTTCACGCCAAATCCTCAT TTAGCTGATGCATATGCTTTCATCAACGGGATTGAAATCGTATCCATGCCCACCAATCTTTATTACACGACTGCGGGTGACCCAGGTCTGCATAATGTTG ACAAGGACGTCAATTCTCCCCTTCAAAAAGAAACTGCTTTAGAGCTTATGTACCGAATAAATGTGGCTGCGAATTACATCGAACCCTACAACGACAGTGG CATGTTTCGAAGTTGGGTAAACGACGTGGATTACTTGACGGATGCTAGACCGAGCGTTTATCAATATAATGGCACTATTCAAATTCAGCATAATAACCAC ACTCGCTATGCTGCACCTGACGTACTCTATCGAACTGCTAGGACCATGGGGCCCAATTCTACTGTAAATGAGGAATACAATATGACTTGGGAGTTTCCGG TCCACTCCACATTCACCTATTTTGTTAGGCTTCATTTCTGTCAGTTTATACCGATTATATTGCGGGAAGGCGATCTAATCTTTCAAATATATATCGCTAA TCAAACTGCCGAGCTTTACGCAGATATAATTTCTTGGGCTGATGGAAATGGGGTTCCCATATACAAAGTTTACGAAGTGAAGATGCATGCCAGAGGAATC GAGGAGGTACAGAATTTGTCGATTGCATTGCACCCTAGTCCACAGTCATTTAGTTTCTCTGAAGCAATGTTGAATGGAGCTGAAATCTTTAAATTGAGCA AATCAGATAGACTTTCCGGACCAAATCCTGGTGTATATCAGGATAGACCCATTAGTAATACTCCTCCTAGCGCGACATCAACAAAGCCAAAGCATAGTCT AAGAAGAACAGTCGCCATTATTGGTGCTGCTGTTTCGGGCATTGTTGTAGTGTCTGTCCTATTTTTCTTGATTTTCCGGAGAAGAGTCCAAAAATTCAAG GACTTGGTTTCTGGTGATGCAGCTTCAAACTTAAGCCCTCTTGTTTCCTCTTCAAGAAAGTCAACAAAGACCCATAGGCCATCTCTACCTTCTGAACTAT GCTACCGTTTCTCGCTAGTTGAGATCATAGCAGCTACAAACAACTTCGACGATTCATTCATTATTGGTGTTGGTGGCTTTGGTAACGTGTACAAAGGATT ATTTGATGGTGGAGTCAATCGTGCTGCGATCAAGCGATTGAATCCAAGTTCACAGCAGGCTATGCTCTCCCAGCTTAGATTCCGCCATTTGGTTTCTCTA ATTGGTTACTGTAATGATAATAATGAGATGATCCTGGTGTATGATTATATGGCTCGGGGGACGCTTCGTGATTATCTCTACAGAACTGATAATCCTCCAC TTTCATGGACTCAACGCCTAGAGATTTGCATCGGTGCTGCCCGTGGGTTGCATTACCTTCACACAGGTGCCAAGCACACTGTCATTCATCGTGATGTGAA GACAACAAATATCTTGCTGGATGAGAAATGGGTGGCCAAAGTTTCGGATTTCGGATTGTCCAAAACAGGCCCTACGAGCACATCGAAGGCCCTACGAGAT GATTTG
AA sequence Show only first row Show all	>Potri.017G097001.1 pacid=42813220 polypeptide=Potri.017G097001.1.p locus=Potri.017G097001 ID=Potri.017G097001.1.v4.1 annot-version=v4.1 MSSSSSSKYLSLTNSSLFTPLHLSFLFLHLTILVTGDLPPPYVPLDSIALDCGSSANSVGNVGQWTADINSRVALLDQNNLSTHPTENVASTSFVPYYTA RVSLSQFTYTFRVNKTGPKFVRLHFNPASYTAFGLRWFFDSFNRSKASFSVTSGRYTFLSNFSGFHYTDPLGERSYAREFILNVEGEQKNLSITFTPNPH LADAYAFINGIEIVSMPTNLYYTTAGDPGLHNVDKDVNSPLQKETALELMYRINVAANYIEPYNDSGMFRSWVNDVDYLTDARPSVYQYNGTIQIQHNNH TRYAAPDVLYRTARTMGPNSTVNEEYNMTWEFPVHSTFTYFVRLHFCQFIPIILREGDLIFQIYIANQTAELYADIISWADGNGVPIYKVYEVKMHARGI EEVQNLSIALHPSPQSFSFSEAMLNGAEIFKLSKSDRLSGPNPGVYQDRPISNTPPSATSTKPKHSLRRTVAIIGAAVSGIVVVSVLFFLIFRRRVQKFK DLVSGDAASNLSPLVSSSRKSTKTHRPSLPSELCYRFSLVEIIAATNNFDDSFIIGVGGFGNVYKGLFDGGVNRAAIKRLNPSSQQAMLSQLRFRHLVSL IGYCNDNNEMILVYDYMARGTLRDYLYRTDNPPLSWTQRLEICIGAARGLHYLHTGAKHTVIHRDVKTTNILLDEKWVAKVSDFGLSKTGPTSTSKALRD DL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Potri.017G097001 [exp]	0	1
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Potri.017G095632 [exp]	2.00	0.9037
AT1G07390		AtRLP1	receptor like protein 1 (.1.2....		Potri.005G008800 [exp]	22.69	0.8179
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.005G008600 [exp]	23.91	0.7454
AT5G40700			unknown protein		Potri.019G075700 [exp]	28.46	0.7733
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Potri.017G096100 [exp]	28.77	0.8131
					Potri.006G172600 [exp]	29.54	0.7154
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G024000 [exp]	34.19	0.8123
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G023964 [exp]	35.21	0.8101
AT5G58470		TAF15b	TBP-associated factor 15B (.1....		Potri.001G281300 [exp]	35.62	0.6927
AT1G07390		AtRLP1	receptor like protein 1 (.1.2....		Potri.003G026914 [exp]	45.82	0.7873

Compare expression of checked genes

Potri.017G097001 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.