Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39040 892 / 0 AtALS1, ABCB27, ALS1, ATTAP2 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) AT3G62150 361 / 2e-110 ABCB21, PGP21 ATP-binding cassette B21, P-glycoprotein 21 (.1) AT2G47000 359 / 6e-110 PGP4 ,MDR4, ABCB4, ATPGP4 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) AT1G70610 338 / 7e-107 ABCB26, ATTAP1 ATP-binding cassette B26, transporter associated with antigen processing protein 1 (.1) AT1G02520 342 / 1e-103 MDR8, ABCB11, PGP11 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) AT3G28860 341 / 2e-103 ABCB19, ATMDR11, ATMDR1, PGP19, MDR11, MDR1, ATPGP19, ATABCB19 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) AT4G01820 340 / 4e-103 ABCB3, MDR3, PGP3 ATP-binding cassette B3, P-glycoprotein 3 (.1) AT4G01830 340 / 4e-103 ABCB5, PGP5 ATP-binding cassette B5, P-glycoprotein 5 (.1) AT1G02530 338 / 2e-102 ABCB12, PGP12 ATP-binding cassette B12, P-glycoprotein 12 (.1) AT1G10680 333 / 1e-100 ABCB10, PGP10 ATP-binding cassette B10, P-glycoprotein 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G059800 [exp] 924 / 0 AT5G39040 887 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Potri.015G059600 [exp] 909 / 0 AT5G39040 874 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Potri.015G059700 [exp] 902 / 0 AT5G39040 874 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Potri.018G051800 [exp] 649 / 0 AT5G39040 627 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Potri.010G003000 [exp] 354 / 6e-108 AT2G47000 1585 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Potri.014G113200 [exp] 350 / 2e-106 AT3G62150 1871 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.014G113000 [exp] 348 / 9e-106 AT3G62150 1767 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.014G113100 [exp] 346 / 6e-105 AT1G02520 1773 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Potri.017G081100 [exp] 344 / 1e-104 AT3G28860 2107 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007987 [exp] 868 / 0 AT5G39040 875 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Lus10021145 [exp] 860 / 0 AT5G39040 868 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Lus10038049 [exp] 351 / 1e-106 AT3G62150 1891 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Lus10009988 [exp] 349 / 3e-106 AT3G62150 1896 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Lus10010012 [exp] 346 / 2e-105 AT1G02520 1526 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Lus10010068 [exp] 344 / 2e-104 AT3G62150 1820 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Lus10038050 [exp] 343 / 3e-104 AT2G47000 1697 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Lus10009989 [exp] 343 / 7e-104 AT2G47000 1754 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Lus10005249 [exp] 342 / 1e-103 AT3G28860 2267 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10030674 [exp] 342 / 1e-103 AT3G28860 2271 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00005 [poplar] [flax] ABC_tran ABC transporter CL0241 [poplar] [flax] ABC_membrane PF00664 [poplar] [flax] ABC_membrane ABC transporter transmembrane region
Representative CDS sequence Show only first row Show all	>Potri.017G097200.3 pacid=42813004 polypeptide=Potri.017G097200.3.p locus=Potri.017G097200 ID=Potri.017G097200.3.v4.1 annot-version=v4.1 ATGGGCAAGAAAGAGTACCTGGATTGGACCTCAAGATCCATTTCATCCTCAGGAAGTGAAAGAGTCTCTCTTTTGACCTCCAAAGATGCAAAGAGGAAAT CAAATGAAGGCGAGTCACCTGATGGTCCTGCAACTGACCTTGAGCTTGGAGGCGGAACAGAGGCCGCAAATGTTGGATTTTCTCGAGTTTTTGCGCTGGC AAAACCTGATGCAGGGAAGTTGATTGTTGGCACCATTGCACTGTTGATAGCGTCCACATCCAGTCTTCTTATCCCAAAATATGGTGGAATGATCATAGAC ATTGTGTCAAGAGATATAAAGACTCCTGAACAGCAATCGGAAGCTCTGGATGCCGTCATGAACACCATATTATATATTGTGTTGATTGTTGTAGTTGGTT CTCTGTGCACTGCACTTCGGGCATGGTTATTTTCCTCAGCTAGTGAAAGGGTTGTAGCTCGTTTAAGAAAGGACTTATTCAGCCACCTTATCAATCAGGA AATAGCCTTCTATGATGTCACTCGAACAGGGGAACTTCTCAGCAGACTGTCAGAGGACACCCAGATCATAAAAAATGCCGCAACAACCAATCTTTCTGAG GCATTCCGTAATCTAACAACTGCCTTGATTGGCGTTTGCTTCATGTTTTCATCATCATGGAAGTTAACATTGTTGGCTTTGGCCATAGTGCCACTTATTT CAGTTGCAGTAAAGAAATTTGGGCGCTATCTTCGTGAACTTTCACATGCAACTCAAGCTGCAGCTGCTGTGGCCGCCTCCATAGCTGAGGAGTCTTTTGG GGCCATTCGAACAGTTAGATCTTTTGCTCAAGAAGAATTCACAATTTCACATTATTCGGAAAAAGTTGATGAGACGCTGATGCTAGGACTCAGACAAGCA AGGATAGTTGGCCTATTTTTTGGAGGAATAAATGCAGCATCTACATTATCTGTAATTGTAGTGGTAGTTTATGGAGCATACTTGACGATAACAGGCGTCA TGACCACAGGCTCTCTTACATCCTTCATTCTTTACAGCCTCACAGTTGGCTCTTCTGTATCTTCTTTGTCTGGACTATATACAACTGCAATGAAAGCTGC TGGGGCAAGCAGGAGAGTGTTTCAGCTCCTGGATCGTATCTCAAGCATGCCAAAATCTGGAGACAAGTGCCCTAGGAGTGATCTGGATGGAGATGTAGAA TTAAATGATGTCTGGTTCGCTTATCCTTCTCGTCCAAGTCACATGGTACTTAAGGGTATAACATTGAAGCTGAGTCCAGGCTCAAAAGTTGCCCTTGTTG GTCCAAGTGGCGGAGGCAAGACCACAATAGCAAACTTAATTGAAAGGTTCTATGACCCTCTCAAGGGACAGATTTTGTTAAATGGGGTTCCATTAGCGGA AATATCACACAAGTATCTTCATGGAAAGGTCAGCATAGTGAGCCAGGAGCCAGTTCTCTTCAACTGTTCTATTGAAGAGAATATTGCCTATGGATACAAT GGAAAAGCTAGTTTTGCTGATATAGAAAATGTAGCTAAAATGGCCAATGCCCATGACTTCATAGATGCATTTCCTGAAAAGTATCAAACAGTTGTAGGCG AACGTGGGTTGAGGCTGTCGGGAGGCCAGAAGCAAAGAGTAGCGATTGCCAGAGCGCTATTGATGAATCCAAGAGTTCTGTTACTGGATGAAGCCACTAG TGCTCTGGATGCTGAAAGTGAATACCTTGTTCAGGATGCCATGGACTCTCTGATGCAGGGCAGGACCGTTCTCGTCATTGCACACAGGCTGTCAACAGTC AAAAGCGCAGATACTGTTGCCGTCATTTCTGACGGTCAGATAGCAGAAAGCGGCACCCATGAAGAACTTCTCAACAAGGATGGTATTTACAATGCGCTAG TCAGGAGGCAACTACAAGGACCCAGCACCGCACTCTAG
AA sequence Show only first row Show all	>Potri.017G097200.3 pacid=42813004 polypeptide=Potri.017G097200.3.p locus=Potri.017G097200 ID=Potri.017G097200.3.v4.1 annot-version=v4.1 MGKKEYLDWTSRSISSSGSERVSLLTSKDAKRKSNEGESPDGPATDLELGGGTEAANVGFSRVFALAKPDAGKLIVGTIALLIASTSSLLIPKYGGMIID IVSRDIKTPEQQSEALDAVMNTILYIVLIVVVGSLCTALRAWLFSSASERVVARLRKDLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSE AFRNLTTALIGVCFMFSSSWKLTLLALAIVPLISVAVKKFGRYLRELSHATQAAAAVAASIAEESFGAIRTVRSFAQEEFTISHYSEKVDETLMLGLRQA RIVGLFFGGINAASTLSVIVVVVYGAYLTITGVMTTGSLTSFILYSLTVGSSVSSLSGLYTTAMKAAGASRRVFQLLDRISSMPKSGDKCPRSDLDGDVE LNDVWFAYPSRPSHMVLKGITLKLSPGSKVALVGPSGGGKTTIANLIERFYDPLKGQILLNGVPLAEISHKYLHGKVSIVSQEPVLFNCSIEENIAYGYN GKASFADIENVAKMANAHDFIDAFPEKYQTVVGERGLRLSGGQKQRVAIARALLMNPRVLLLDEATSALDAESEYLVQDAMDSLMQGRTVLVIAHRLSTV KSADTVAVISDGQIAESGTHEELLNKDGIYNALVRRQLQGPSTAL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G39040		AtALS1, ABCB27,...	ARABIDOPSIS THALIANA TRANSPORT...		Potri.017G097200 [exp]	0	1
AT2G14170		ALDH6B2	aldehyde dehydrogenase 6B2 (....		Potri.009G078600 [exp]	1.00	0.6715	ALDH6.4
AT2G18850			SET domain-containing protein ...		Potri.006G168900 [exp]	10.53	0.5877
AT2G36305		RCE1, ATFACE2, ...	RAS-CONVERTING ENZYME 1, ARABI...		Potri.006G083300 [exp]	11.66	0.5786
AT5G41940			Ypt/Rab-GAP domain of gyp1p su...		Potri.015G007400 [exp]	15.65	0.5395
AT2G45690		PEX16, SSE1, AT...	SHRUNKEN SEED 1, ARABIDOPSIS P...		Potri.014G078300 [exp]	19.07	0.4855	Pt-SSE1.1
AT2G32170			S-adenosyl-L-methionine-depend...		Potri.006G023400 [exp]	20.34	0.5252
AT1G19250		FMO1	flavin-dependent monooxygenase...		Potri.005G250600 [exp]	28.84	0.5148
AT4G04320			malonyl-CoA decarboxylase fami...		Potri.004G005500 [exp]	51.67	0.4839
AT2G45690		PEX16, SSE1, AT...	SHRUNKEN SEED 1, ARABIDOPSIS P...		Potri.002G152300 [exp]	58.80	0.4852
AT5G06310		ATPOT1B, ATPOT1	protection of telomeres 1b, Nu...		Potri.012G046400 [exp]	61.16	0.4403

Compare expression of checked genes

Potri.017G097200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.