Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15640 460 / 3e-164 Mitochondrial substrate carrier family protein (.1) AT1G72820 263 / 2e-86 Mitochondrial substrate carrier family protein (.1) AT5G26200 252 / 3e-82 Mitochondrial substrate carrier family protein (.1) AT1G07030 101 / 2e-24 Mitochondrial substrate carrier family protein (.1) AT2G30160 100 / 2e-24 Mitochondrial substrate carrier family protein (.1) AT4G11440 92 / 3e-20 Mitochondrial substrate carrier family protein (.1) AT5G42130 81 / 9e-17 AtMfl1 MitoFerrinLike1, Mitochondrial substrate carrier family protein (.1) AT1G34065 77 / 7e-16 SAMC2 S-adenosylmethionine carrier 2 (.1) AT3G20240 76 / 3e-15 Mitochondrial substrate carrier family protein (.1) AT4G32400 73 / 2e-14 EMB42, EMB104, ATBT1, SHS1 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G117000 [exp] 537 / 0 AT5G15640 434 / 1e-153 Mitochondrial substrate carrier family protein (.1) Potri.008G100100 [exp] 293 / 2e-98 AT5G15640 338 / 5e-116 Mitochondrial substrate carrier family protein (.1) Potri.018G050300 [exp] 242 / 4e-78 AT1G72820 435 / 2e-153 Mitochondrial substrate carrier family protein (.1) Potri.006G223600 [exp] 240 / 3e-77 AT1G72820 429 / 7e-151 Mitochondrial substrate carrier family protein (.1) Potri.016G125200 [exp] 111 / 3e-28 AT1G07030 436 / 1e-154 Mitochondrial substrate carrier family protein (.1) Potri.009G077600 [exp] 101 / 1e-24 AT1G07030 425 / 4e-150 Mitochondrial substrate carrier family protein (.1) Potri.001G282400 [exp] 100 / 2e-24 AT1G07030 426 / 1e-150 Mitochondrial substrate carrier family protein (.1) Potri.003G127600 [exp] 99 / 7e-23 AT4G11440 437 / 3e-146 Mitochondrial substrate carrier family protein (.1) Potri.006G252100 [exp] 94 / 2e-21 AT4G32400 493 / 4e-175 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041498 [exp] 487 / 2e-174 AT5G15640 494 / 2e-177 Mitochondrial substrate carrier family protein (.1) Lus10012597 [exp] 484 / 1e-171 AT5G15640 488 / 9e-173 Mitochondrial substrate carrier family protein (.1) Lus10035134 [exp] 475 / 6e-170 AT5G15640 477 / 2e-170 Mitochondrial substrate carrier family protein (.1) Lus10031969 [exp] 397 / 3e-140 AT5G15640 404 / 3e-143 Mitochondrial substrate carrier family protein (.1) Lus10026468 [exp] 229 / 6e-73 AT5G26200 416 / 7e-146 Mitochondrial substrate carrier family protein (.1) Lus10025015 [exp] 224 / 5e-71 AT5G26200 414 / 3e-145 Mitochondrial substrate carrier family protein (.1) Lus10026466 [exp] 217 / 2e-68 AT5G26200 409 / 5e-143 Mitochondrial substrate carrier family protein (.1) Lus10042258 [exp] 110 / 1e-27 AT2G30160 484 / 2e-173 Mitochondrial substrate carrier family protein (.1) Lus10026395 [exp] 110 / 1e-27 AT2G30160 483 / 5e-173 Mitochondrial substrate carrier family protein (.1) Lus10029770 [exp] 83 / 1e-17 AT5G42130 478 / 5e-169 MitoFerrinLike1, Mitochondrial substrate carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [poplar] [flax] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Potri.017G098500.2 pacid=42813590 polypeptide=Potri.017G098500.2.p locus=Potri.017G098500 ID=Potri.017G098500.2.v4.1 annot-version=v4.1 ATGGCAGCATCATCGCTTGGACAGACCACCGAGATCAACTGGGACAAGCTCGATAAGACTAAGTTTTATGTTGTAGGAGCCGGTATATTTACTGGAGTGA CAGTGGCACTGTATCCCATGTCTGTTATAAAAACTAGACTTCAGGTTGCTACGAAGGATACTGTTGAGAAAAGTGCATCTTCTGTTATTAGAGGGATACT GAAAACAGATGGGATTCCTGGTCTCTATAGAGGATTTGGTACTGTCGTCACTGCTGCAATTCCTACCAGAATTATCTTTCTTACTGCATTGGAGACCACG AAAGCAGCTGCTTTTAAGATGGTTGAGCCATTTAAATTCTCTGAACCTTCACAAGCAGCCTTAGCAAATGGCATTGCTGGCATGTCAGCATCGCTTTGTT CTCAAGCTGTCTTTGTTCCCATTGATGTGATTAGCCAAAAGTTGATGGTGCAAGGATATTCTGGCCATGAGAAGTATAATGGGGGTCTGGATGTTGCACG CAAGATTATAAGGACTGATGGCATCAGAGGATTTTACAGGGGGTTTGGTCTATCAGTCATGACTTATTCACCATCTAGTGCTGTATGGTGGGCGAGTTAT GGTTCAAGCCAACGTGTCATCTGGAGGCTTTTAGGCCAGGGTACTGATCGCGAGGGAGCTGCTCCTAGTGAGTCAACTATAATGCTAGTTCAGGCAACTG GAGGAATTATCGCGGGAGCTACAGCTTCCTGCATCACAACCCCTTTGGATACAATTAAGACTCGCTTACAGGTGACGAGTCTTGAAAGAAGAAGCTCTGC AAGACAAGTTGTTAAAAGCTTGATTAAGGATGATGGTTGGACAGGCTTCTACAGAGGGTTGGGTCCTAGATTTTTCAGCATGTCAGCGTGGGGAACCACA ATGATATTAGCTTATGAATATTTGAAGCGGTTGTGTGCAAAGGATGAATAG
AA sequence Show only first row Show all	>Potri.017G098500.2 pacid=42813590 polypeptide=Potri.017G098500.2.p locus=Potri.017G098500 ID=Potri.017G098500.2.v4.1 annot-version=v4.1 MAASSLGQTTEINWDKLDKTKFYVVGAGIFTGVTVALYPMSVIKTRLQVATKDTVEKSASSVIRGILKTDGIPGLYRGFGTVVTAAIPTRIIFLTALETT KAAAFKMVEPFKFSEPSQAALANGIAGMSASLCSQAVFVPIDVISQKLMVQGYSGHEKYNGGLDVARKIIRTDGIRGFYRGFGLSVMTYSPSSAVWWASY GSSQRVIWRLLGQGTDREGAAPSESTIMLVQATGGIIAGATASCITTPLDTIKTRLQVTSLERRSSARQVVKSLIKDDGWTGFYRGLGPRFFSMSAWGTT MILAYEYLKRLCAKDE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G15640			Mitochondrial substrate carrie...		Potri.017G098500 [exp]	0	1
AT5G67490			unknown protein		Potri.015G017700 [exp]	1.41	0.8160
AT3G14390			Pyridoxal-dependent decarboxyl...		Potri.005G246300 [exp]	4.69	0.8024
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Potri.008G054700 [exp]	5.29	0.7809	Pt-HSP70.6
AT5G46230			Protein of unknown function, D...		Potri.004G064700 [exp]	8.48	0.7178
AT3G06760			Drought-responsive family prot...		Potri.011G057200 [exp]	13.67	0.7243
					Potri.013G070900 [exp]	13.85	0.7259
AT1G69640		SBH1	sphingoid base hydroxylase 1 (...		Potri.005G200000 [exp]	16.27	0.7738
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Potri.005G253400 [exp]	17.23	0.7106
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Potri.002G007800 [exp]	24.10	0.6811
AT5G15470		GAUT14	galacturonosyltransferase 14 (...		Potri.017G090800 [exp]	24.41	0.6553

Compare expression of checked genes

Potri.017G098500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.