Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60920 601 / 0 COB COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT3G02210 594 / 0 COBL1 COBRA-like protein 1 precursor (.1) AT3G29810 566 / 0 COBL2 COBRA-like protein 2 precursor (.1) AT5G15630 524 / 0 IRX6, COBL4 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT1G09790 412 / 8e-142 COBL6 COBRA-like protein 6 precursor (.1) AT5G60950 231 / 2e-74 COBL5 COBRA-like protein 5 precursor (.1) AT4G16120 120 / 3e-29 ATSEB1, COBL7 ARABIDOPSIS THALIANA SEC61 BETA 1, COBRA-like protein-7 precursor (.1) AT5G49270 114 / 4e-27 DER9, MRH4, SHV2, COBL9 SHAVEN 2, MUTANT ROOT HAIR 4, DEFORMED ROOT HAIRS 9, COBRA-LIKE 9, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT3G16860 104 / 5e-24 COBL8 COBRA-like protein 8 precursor (.1) AT3G20580 102 / 3e-23 COBL10 COBRA-like protein 10 precursor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G098700 [exp] 756 / 0 AT5G60920 614 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.004G117100 [exp] 654 / 0 AT3G02210 724 / 0.0 COBRA-like protein 1 precursor (.1) Potri.015G060000 [exp] 627 / 0 AT5G60920 759 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.015G060100 [exp] 530 / 0 AT5G15630 739 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.015G060200 [exp] 511 / 0 AT5G15630 669 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.004G117200 [exp] 500 / 8e-177 AT5G15630 679 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.012G062200 [exp] 491 / 2e-173 AT5G15630 586 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.004G219200 [exp] 419 / 7e-145 AT1G09790 511 / 2e-180 COBRA-like protein 6 precursor (.1) Potri.004G167100 [exp] 370 / 1e-125 AT3G29810 407 / 2e-139 COBRA-like protein 2 precursor (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021144 [exp] 597 / 0 AT5G60920 749 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10034671 [exp] 595 / 0 AT5G60920 732 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10012598 [exp] 590 / 0 AT3G02210 697 / 0.0 COBRA-like protein 1 precursor (.1) Lus10007986 [exp] 590 / 0 AT5G60920 755 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10034379 [exp] 577 / 0 AT3G02210 685 / 0.0 COBRA-like protein 1 precursor (.1) Lus10035131 [exp] 527 / 0 AT5G15630 704 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10031972 [exp] 527 / 0 AT5G15630 704 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10034670 [exp] 525 / 0 AT5G15630 715 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10017863 [exp] 525 / 0 AT5G15630 717 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10034666 [exp] 501 / 8e-177 AT5G15630 627 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04833 [poplar] [flax] COBRA COBRA-like protein
Representative CDS sequence Show only first row Show all	>Potri.017G098600.1 pacid=42814430 polypeptide=Potri.017G098600.1.p locus=Potri.017G098600 ID=Potri.017G098600.1.v4.1 annot-version=v4.1 ATGAGTTTCCTCTCAAAATCAACTGTTCTGCTTCTGTTTGTGCTTTGCTGCACCAGCTTCACTTCAACTGAAGCCTATGATCCTCTTGATCCAAATGGGA ATATTACAATCAAATGGGACGTTGTGAACTGGACTCCTGTTGGCTATGTAGCCGTCGTCACAATCTACAACTACCAGCAGTATCGCCACATCGAAGCACC GGGTTGGTTATTAGGATGGACATGGGCAAATAATGAGGTAATATGGAGCATGTCTGGAGGCCAAACAACAGAGCAAGGAAATTGTTCAAGATTCAAAGGC AACATTCCGCGTTGCTGTAAGAAGAGTCCAACAGTTGTAGATTTATCGCCGAGAACTCCTCACAACCAAAAGATTGCAAATTGCTGCAAAGGGGGATTAA TCAGCTCGATGGCGCAAGATCCAGCTAATGCAGCAAGCTCATTCCAGCTCAGTGTGGGTTCAGCTGGAAATACCAACAAAACAGTCAGGATACCTAAGAA CTTCACTATGAATACACCAGGACCTGGTTATACATGTGGTCCTGCAAAAATTGTTAGACCTTCTAAATTTTTATCTGCAGATAAAAGGAGAATCACACAA GCTTTGATGACCTGGAATATTACATGCACATACTCACATTTCCTGACTCACAAGGCTCCTACTTGCTGTGTCTCTCTCTCATCTTTCAACAACAAGGCAA TAGCGCCCTGCCCGGCATCTTCTTGTGGCCGCAGAAAAAACAATACAGTTTCAAGGGGTTGTGTGGATCCAAAATCACCTCATGTTCCAGGCCACAAGAA CATCATCACGCCTCTTGTCCAATGCACGAGCCATATGTGCCCAATCAAAATTCAATGGCATCTTAAGCTCAACTACAAGGATTACTGGAGAGTTACGATC ATAATTACAAATTTGAATTATCATATGAACTATACACAATGGAACTTAATTGTTCAGCACCCCAATTTCGACAATTTGACACAGGTTTTCGGCTCTAAAT ACAAAGCATTAACTTCTTTTTCAACTACTAATGATACTGCCATGCTGTGGGGAATCAAGCACTACAACGACGTGCTGATGCAAGCTGGTCGTTCTGGTAA AGTTCACTTAGAGTTGCTTTTCCGAAAAGACAAGGCAACTTTTACTTCCAAGAAGGGCTGGGCCTTCCCTCAGAGAATCTATTTCAATGGCGATAGTTGT GTCTTGCCTCCTCCGGATGCCTATCCCCTGGTTGCCTAG
AA sequence Show only first row Show all	>Potri.017G098600.1 pacid=42814430 polypeptide=Potri.017G098600.1.p locus=Potri.017G098600 ID=Potri.017G098600.1.v4.1 annot-version=v4.1 MSFLSKSTVLLLFVLCCTSFTSTEAYDPLDPNGNITIKWDVVNWTPVGYVAVVTIYNYQQYRHIEAPGWLLGWTWANNEVIWSMSGGQTTEQGNCSRFKG NIPRCCKKSPTVVDLSPRTPHNQKIANCCKGGLISSMAQDPANAASSFQLSVGSAGNTNKTVRIPKNFTMNTPGPGYTCGPAKIVRPSKFLSADKRRITQ ALMTWNITCTYSHFLTHKAPTCCVSLSSFNNKAIAPCPASSCGRRKNNTVSRGCVDPKSPHVPGHKNIITPLVQCTSHMCPIKIQWHLKLNYKDYWRVTI IITNLNYHMNYTQWNLIVQHPNFDNLTQVFGSKYKALTSFSTTNDTAMLWGIKHYNDVLMQAGRSGKVHLELLFRKDKATFTSKKGWAFPQRIYFNGDSC VLPPPDAYPLVA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G60920		COB	COBRA-like extracellular glyco...		Potri.017G098600 [exp]	0	1
AT4G10350	NAC	BRN2, NST4, ANA...	BEARSKIN 2, NAC domain contain...		Potri.013G092400 [exp]	1.41	0.9787	NAC064
AT5G37990			S-adenosyl-L-methionine-depend...		Potri.017G121800 [exp]	5.09	0.9721
AT5G37970			S-adenosyl-L-methionine-depend...		Potri.017G122000 [exp]	6.70	0.9655
AT4G00750			S-adenosyl-L-methionine-depend...		Potri.012G137300 [exp]	10.19	0.9644
AT3G01190			Peroxidase superfamily protein...		Potri.004G023200 [exp]	10.95	0.9533
AT4G38470		STY46	serine/threonine/tyrosine kina...		Potri.005G246400 [exp]	11.40	0.9519
AT5G17540			HXXXD-type acyl-transferase fa...		Potri.001G447300 [exp]	11.83	0.9558
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Potri.003G122500 [exp]	12.04	0.9616	CYP87.2
AT3G22060			Receptor-like protein kinase-r...		Potri.011G030800 [exp]	14.38	0.9532
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.004G033000 [exp]	15.09	0.9580

Compare expression of checked genes

Potri.017G098600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.