Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02300 712 / 0 Regulator of chromosome condensation (RCC1) family protein (.1) AT5G63860 121 / 9e-30 UVR8 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) AT5G16040 116 / 3e-28 Regulator of chromosome condensation (RCC1) family protein (.1) AT3G02510 113 / 3e-27 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) AT1G76950 114 / 2e-26 PRAF1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G12350 114 / 2e-26 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G19420 112 / 7e-26 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) AT1G69710 112 / 9e-26 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT4G14368 112 / 9e-26 Regulator of chromosome condensation (RCC1) family protein (.1) AT5G42140 108 / 8e-25 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G100200 [exp] 123 / 2e-30 AT5G63860 738 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Potri.004G101800 [exp] 118 / 5e-29 AT5G16040 665 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.017G113200 [exp] 118 / 7e-29 AT5G16040 676 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.008G167500 [exp] 118 / 8e-28 AT4G14368 1266 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.004G080900 [exp] 117 / 2e-27 AT1G65920 940 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.017G139600 [exp] 114 / 1e-26 AT1G65920 937 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.002G070300 [exp] 112 / 9e-26 AT5G42140 1422 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.001G276900 [exp] 109 / 5e-25 AT5G19420 1483 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.009G071800 [exp] 108 / 2e-24 AT5G19420 1610 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030712 [exp] 742 / 0 AT3G02300 717 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Lus10013197 [exp] 721 / 0 AT3G02300 711 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Lus10033543 [exp] 116 / 3e-28 AT3G02510 648 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Lus10029536 [exp] 116 / 5e-28 AT5G63860 642 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Lus10039618 [exp] 116 / 6e-28 AT5G63860 715 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Lus10037192 [exp] 118 / 9e-28 AT1G69710 986 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10036737 [exp] 117 / 2e-27 AT1G69710 974 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10002751 [exp] 114 / 2e-26 AT5G19420 949 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10042215 [exp] 112 / 2e-26 AT5G60870 547 / 0.0 RCC1/UVR8/GEF-like 3, Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2), Regulator of chromosome condensation (RCC1) family protein (.3) Lus10009701 [exp] 112 / 5e-26 AT5G19420 1567 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00415 [poplar] [flax] RCC1 Regulator of chromosome condensation (RCC1) repeat
Representative CDS sequence Show only first row Show all	>Potri.017G099900.4 pacid=42813481 polypeptide=Potri.017G099900.4.p locus=Potri.017G099900 ID=Potri.017G099900.4.v4.1 annot-version=v4.1 ATGAAATTTCAATCTGTCTCATTTTGGGTTTATTTGTTGGTTTTACTGTTAGGGGTTTTTAAAAGACGTGATAGAATAGAAATGGATATAAATGAGATAG TAGGAGAGACGAAAAGGTCAGTGAATTTTCCAACAAAGAGTGCAATTTATGTGTGGGGATACAATCAGAGTGGGCAAACAGGGAGGAAAGGCAAAGATGG TCAATTGAGAATTCCAAAACAGCTTCCTCCCGAGCTTTTTGGGTGCCCTGCAGGAGCTAATGCTAGGTGGTTGGATATAGCTTGTGGCCGTGAGCATACT GCTGCTGTGGCTTCTGATGGGTCACTTTTCACTTGGGGGGCTAACGAATTTGGTCAACTGGGAGATGGCACTGAGGACAGCAGGAAGTACCCGAAGAAAG TGAAGCAACTGGAGACAGAGTTTGTGAAATCTGTATCTTGTGGGGCACATTGTACTGCTGCTATTGCAGAGCCTCGTCAAAATGATGGAACCATCTTGAG TAGGCTCTGGGTTTGGGGACAAAATCAGGGATCAAATTATCCACGTTTGTTCTGTGGTGCCTTTTCACCAAACACGATCATCTGCCAGGTGTCCTGTGGT GCAGTTCATGTGGTGGCTTTATCAGAGGATGGCCTACTGCAAGCTTGGGGCTACAATGAATATGGTCAACTTGGCAGAGGTTTTACTTGTGAAGGACTAC AGGGGGCTCGTGTAATAAATGCTTATGCAAAGTTTCTTGACGAAGCCCCTGAGCTTGTGAAGATTACCCAAGTGTCATGCGGGGAGTACCACACAGCTGC CATATCTGAAAAGGGCGAGGTCTATACTTGGGGGCTAGGAAACATGGGCCAACTTGGGCATACTTCTCTTCAGTCTGGGGATAAAGAGTTGCTGCCGAGG CGAGTGGTTGCCCTTGATGGAATCTTCATCAAGGATGTTGCATGTGGAGGTGTACACACTTGTGCAGCGACTCAAAAGGGAGCTCTTTATGCTTGGGGTG GTGGTCAAGCTGGGCAATTGGGCCTTGGCCCCCAAACTGGATCTTTTTCTTTCATTCCTAGCGAATCTGAATCCTTTCTGCGAAATATCCCTGCTTTGGT GGTCCCAACTGATGTGCAACATGTTGCTTGTGGACATTCTCACACACTTGTTTCTATGAGGGATGGAAGAATACATGGATGGGGTTACAATAGCTATGGT CAGGCAGCAAATGAGAAATCTACTTACGCTTGGTATCCATCACCAGTTGACTGGTGTGTAGGGGAAGTGCGGAAACTAGCAGCTGGCGGTGGCCATTCAG CAGTGCTGACTGATGCTTGTTCCTTGAAAGAGTTGTGCGAGTTTAGACTTGCAGAGAATGTAACTTTATCAAATGCCTCTGAGATTGAGGATGTTGCATC CAGAACAGGAGCAGATGCTTTAGCACGCCTCTGTGGAAGATTGAGGGAGCATTTGCTTGGTGGTGATTTAGATTATGAAGATATCAGCAACAGGAAGGAC GGAACAAACAATTAG
AA sequence Show only first row Show all	>Potri.017G099900.4 pacid=42813481 polypeptide=Potri.017G099900.4.p locus=Potri.017G099900 ID=Potri.017G099900.4.v4.1 annot-version=v4.1 MKFQSVSFWVYLLVLLLGVFKRRDRIEMDINEIVGETKRSVNFPTKSAIYVWGYNQSGQTGRKGKDGQLRIPKQLPPELFGCPAGANARWLDIACGREHT AAVASDGSLFTWGANEFGQLGDGTEDSRKYPKKVKQLETEFVKSVSCGAHCTAAIAEPRQNDGTILSRLWVWGQNQGSNYPRLFCGAFSPNTIICQVSCG AVHVVALSEDGLLQAWGYNEYGQLGRGFTCEGLQGARVINAYAKFLDEAPELVKITQVSCGEYHTAAISEKGEVYTWGLGNMGQLGHTSLQSGDKELLPR RVVALDGIFIKDVACGGVHTCAATQKGALYAWGGGQAGQLGLGPQTGSFSFIPSESESFLRNIPALVVPTDVQHVACGHSHTLVSMRDGRIHGWGYNSYG QAANEKSTYAWYPSPVDWCVGEVRKLAAGGGHSAVLTDACSLKELCEFRLAENVTLSNASEIEDVASRTGADALARLCGRLREHLLGGDLDYEDISNRKD GTNN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G02300			Regulator of chromosome conden...		Potri.017G099900 [exp]	0	1
AT1G16810			unknown protein		Potri.005G174400 [exp]	1.73	0.9585
AT2G32070			Polynucleotidyl transferase, r...		Potri.001G046700 [exp]	3.87	0.9431
AT5G41470			Nuclear transport factor 2 (NT...		Potri.003G131500 [exp]	13.41	0.9473
AT3G24500		MBF1C, ATMBF1C	multiprotein bridging factor 1...		Potri.018G075200 [exp]	13.74	0.9400
AT4G31560		HCF153	high chlorophyll fluorescence ...		Potri.003G203300 [exp]	15.77	0.9110
					Potri.003G131550 [exp]	20.59	0.9453
AT3G60220		ATL4	TOXICOS EN LEVADURA 4 (.1)		Potri.002G140600 [exp]	23.10	0.8707
AT5G08391			Protein of unknown function (D...		Potri.017G064301 [exp]	25.27	0.9131
AT1G30070			SGS domain-containing protein ...		Potri.011G085100 [exp]	26.45	0.9285
AT3G24100			Uncharacterised protein family...		Potri.014G056600 [exp]	31.93	0.8747

Compare expression of checked genes

Potri.017G099900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.