Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38900 329 / 2e-115 Thioredoxin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034369 [exp] 368 / 1e-130 AT5G38900 318 / 1e-111 Thioredoxin superfamily protein (.1) Lus10005082 [exp] 340 / 5e-120 AT5G38900 294 / 3e-102 Thioredoxin superfamily protein (.1) Lus10005083 [exp] 327 / 1e-114 AT5G38900 280 / 1e-96 Thioredoxin superfamily protein (.1) Lus10034368 [exp] 189 / 1e-59 AT5G38900 147 / 2e-43 Thioredoxin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [poplar] [flax] Thioredoxin PF01323 [poplar] [flax] DSBA DSBA-like thioredoxin domain
Representative CDS sequence Show only first row Show all	>Potri.017G100000.1 pacid=42813475 polypeptide=Potri.017G100000.1.p locus=Potri.017G100000 ID=Potri.017G100000.1.v4.1 annot-version=v4.1 ATGTTTCTCAACTGTTTGGTAGCTCTTGAGAAGGTCACAGCTCCTTCATTCTTCCAGTTTAAAGATCGCAGATACTTAAGCATCATGGCTGAGTCAGTTA GTAACAACACTGGAAAGAAGCTTGTCCGAATTGATGTCAGTTCAGACACTGTATGCCCATGGTGTTTTGTTGGCAAGAGAAATTTGGACAAAGCTATAGC TGCTTCTAAGGATCGGTTTGATTTTGAGATCAAATGGCATCCTTTTTTTCTTAATCCTTCTGCCCCTAAAGAAGGTGTGAATAAGCTAGATTTCTACAGG GAAAAGTTTGGATCTCGAGCTGAAGGAATCTTGGCTCGGATGACTGAGATTTTTAAAGGTCTTGGTCTGGAATATAACTTGTCTGGACTCACGGGCAATA CTCTAGACAGCCACAGACTTATAAATTTTGCCGGCCAACAGGGTCTTGATAAGCAACATAAACTTGCTGAGGAGCTATTTCTTGGATACTTCACTCAGGC CAAATATGTTGGTGATAGGGAATTTCTTCTAGAATGTGCTCAAAAGGTTGGGGTAGAGGGAGCAGCTAAATTTCTTGAAGATCCTAATAATGGAGTCAAG GAGGTTAACGAGGAGCTTGAGAAGTACTCAGCACATATCACAGGAGTCCCATTCTACGTGATCAATGGGAAACAGAAGTTGAGTGGTGGCCAGCCCCCTG AGGTTTTCCAGAAAGCGTTTGAAGTTTCCGCAAAATGA
AA sequence Show only first row Show all	>Potri.017G100000.1 pacid=42813475 polypeptide=Potri.017G100000.1.p locus=Potri.017G100000 ID=Potri.017G100000.1.v4.1 annot-version=v4.1 MFLNCLVALEKVTAPSFFQFKDRRYLSIMAESVSNNTGKKLVRIDVSSDTVCPWCFVGKRNLDKAIAASKDRFDFEIKWHPFFLNPSAPKEGVNKLDFYR EKFGSRAEGILARMTEIFKGLGLEYNLSGLTGNTLDSHRLINFAGQQGLDKQHKLAEELFLGYFTQAKYVGDREFLLECAQKVGVEGAAKFLEDPNNGVK EVNEELEKYSAHITGVPFYVINGKQKLSGGQPPEVFQKAFEVSAK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G38900			Thioredoxin superfamily protei...		Potri.017G100000 [exp]	0	1
AT5G27280			Zim17-type zinc finger protein...		Potri.002G015900 [exp]	4.24	0.8891
AT2G39000			Acyl-CoA N-acyltransferases (N...		Potri.008G039300 [exp]	15.26	0.9040
AT5G27280			Zim17-type zinc finger protein...		Potri.005G246200 [exp]	17.54	0.9017
AT5G38060			unknown protein		Potri.017G122500 [exp]	20.88	0.8994
AT5G03370			acylphosphatase family (.1)		Potri.016G093000 [exp]	25.63	0.9014
AT4G32480			Protein of unknown function (D...		Potri.013G100500 [exp]	30.24	0.8991
AT1G53920		GLIP5	GDSL-motif lipase 5 (.1)		Potri.018G063901 [exp]	35.87	0.8885
AT1G68660			Ribosomal protein L12/ ATP-dep...		Potri.010G128500 [exp]	46.47	0.8843
AT1G04985			unknown protein		Potri.014G159600 [exp]	47.84	0.8762
AT1G21065			unknown protein		Potri.002G001500 [exp]	48.98	0.8847

Compare expression of checked genes

Potri.017G100000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.