Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15790 229 / 1e-75 RING/U-box superfamily protein (.1.2) AT5G38895 221 / 3e-72 RING/U-box superfamily protein (.1.2.3) AT3G02290 217 / 2e-70 RING/U-box superfamily protein (.1.2) AT5G41350 79 / 1e-17 RING/U-box superfamily protein (.1) AT4G00335 75 / 2e-16 RHB1A RING-H2 finger B1A (.1.2.3) AT4G23450 71 / 5e-15 AIRP1, AtAIRP1 ABA Insensitive RING Protein 1, RING/U-box superfamily protein (.1.2.3) AT4G14220 59 / 6e-10 RHF1A RING-H2 group F1A (.1) AT5G22000 55 / 1e-08 RHF2A, CIC7E11 RING-H2 group F2A (.1.2.3) AT5G37250 49 / 5e-07 RING/U-box superfamily protein (.1) AT3G58720 49 / 6e-07 RING/U-box superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G114800 [exp] 333 / 3e-116 AT5G15790 246 / 6e-83 RING/U-box superfamily protein (.1.2) Potri.003G161600 [exp] 169 / 7e-52 AT5G15790 167 / 2e-51 RING/U-box superfamily protein (.1.2) Potri.001G068700 [exp] 163 / 2e-49 AT5G38895 161 / 1e-49 RING/U-box superfamily protein (.1.2.3) Potri.010G140300 [exp] 103 / 2e-26 AT5G38895 129 / 4e-37 RING/U-box superfamily protein (.1.2.3) Potri.001G101700 [exp] 97 / 4e-24 AT5G41350 142 / 2e-42 RING/U-box superfamily protein (.1) Potri.014G087000 [exp] 91 / 9e-22 AT4G00335 222 / 2e-73 RING-H2 finger B1A (.1.2.3) Potri.003G129900 [exp] 85 / 2e-19 AT5G41350 146 / 6e-44 RING/U-box superfamily protein (.1) Potri.002G161500 [exp] 69 / 1e-13 AT4G00335 159 / 8e-49 RING-H2 finger B1A (.1.2.3) Potri.008G149300 [exp] 64 / 1e-11 AT5G22000 186 / 4e-55 RING-H2 group F2A (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005084 [exp] 287 / 2e-98 AT5G38895 224 / 8e-75 RING/U-box superfamily protein (.1.2.3) Lus10034367 [exp] 279 / 7e-95 AT5G38895 215 / 2e-70 RING/U-box superfamily protein (.1.2.3) Lus10024635 [exp] 101 / 4e-26 AT5G41350 178 / 7e-57 RING/U-box superfamily protein (.1) Lus10032270 [exp] 99 / 1e-24 AT5G41350 192 / 2e-61 RING/U-box superfamily protein (.1) Lus10017788 [exp] 86 / 3e-20 AT4G00335 204 / 3e-67 RING-H2 finger B1A (.1.2.3) Lus10004636 [exp] 61 / 1e-11 AT5G41350 74 / 3e-17 RING/U-box superfamily protein (.1) Lus10029351 [exp] 62 / 9e-11 AT5G22000 270 / 7e-89 RING-H2 group F2A (.1.2.3) Lus10013606 [exp] 62 / 1e-10 AT5G22000 337 / 4e-114 RING-H2 group F2A (.1.2.3) Lus10016195 [exp] 61 / 1e-10 AT5G22000 276 / 2e-91 RING-H2 group F2A (.1.2.3) Lus10021245 [exp] 61 / 2e-10 AT5G22000 336 / 2e-113 RING-H2 group F2A (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.017G100100.3 pacid=42814360 polypeptide=Potri.017G100100.3.p locus=Potri.017G100100 ID=Potri.017G100100.3.v4.1 annot-version=v4.1 ATGGGTTCTGTTTGTTGCTGTTTGCATGTTGATGATTTTGAGGATTATATGAATCCTGAGAATTCTGAATATAGAAACTGCTTGTGCCTCAGTTGCTTTG TCCAGAATTTCCTACATGTGTATACCTCAATATTTCGTAGAGGGCAAGTGCATTCTGTCCCTTCATCCATTCAAGGGGCAGCATCTCTGACTTCTTCATC TCTTGACAACTCTCTTGCTGAAATGTACCGATCTCCTCCGCGGCCCTTGCCCTATGATGCTGACCCCAGATGCTTGCGCTTGCAGCGTGATGGTCTGGTT TCAAGACGAGAGAAGGGTTCCAGTCATTCACACGAGGAATCAGAACCCTTGAGAAGTGATAATGATGCTGATTCTGAATCCTTCAGAACAGGAGACAAAT GGAATGCATCTGCTTGTGAAGGAGGCAAGGAACAGCATTCTAGATCCTCATTAAAGCTCTCATCAGCAAAAGCAACAGTTGGAATTGGATATGTTTATTC TTCCTCGGAAGAAGAGGATGTCTGTCCTACATGTCTTGATGAATATACTCCTGAGGACCCAAAGATAATGACAAAATGCTCTCACCATTTCCACCTTGGT TGCATTTATGAGTGGATGGAAAGAAGTGATAGCTGCCCAGTCTGTGGAAAGGTAACTATTGTTGCTTTATTTTCTTCAAACTTGCTCATTCAATTTTCAA TATTCATACTGGAAATATATCAATCAGTGCATTTCCTAGTTCTGGAAATATTCCAATATTGCCTCACCTCTCCTCCTGGGTACTGGAATCATTTTTATGA AGTTGAGACTTGA
AA sequence Show only first row Show all	>Potri.017G100100.3 pacid=42814360 polypeptide=Potri.017G100100.3.p locus=Potri.017G100100 ID=Potri.017G100100.3.v4.1 annot-version=v4.1 MGSVCCCLHVDDFEDYMNPENSEYRNCLCLSCFVQNFLHVYTSIFRRGQVHSVPSSIQGAASLTSSSLDNSLAEMYRSPPRPLPYDADPRCLRLQRDGLV SRREKGSSHSHEESEPLRSDNDADSESFRTGDKWNASACEGGKEQHSRSSLKLSSAKATVGIGYVYSSSEEEDVCPTCLDEYTPEDPKIMTKCSHHFHLG CIYEWMERSDSCPVCGKVTIVALFSSNLLIQFSIFILEIYQSVHFLVLEIFQYCLTSPPGYWNHFYEVET

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G15790			RING/U-box superfamily protein...		Potri.017G100100 [exp]	0	1
AT5G52340		ATEXO70A2	exocyst subunit exo70 family p...		Potri.016G071000 [exp]	2.23	0.8714
AT2G18060	NAC	ANAC037, VND1	Arabidopsis NAC domain contain...		Potri.007G014400 [exp]	2.44	0.8934
AT4G32280	AUX_IAA	IAA29	indole-3-acetic acid inducible...		Potri.006G255200 [exp]	4.00	0.8669
AT5G23750			Remorin family protein (.1.2)		Potri.003G124400 [exp]	7.00	0.8671
AT5G13420			Aldolase-type TIM barrel famil...		Potri.003G161900 [exp]	7.61	0.8776
AT1G32320		ATMKK10	MAP kinase kinase 10 (.1)		Potri.001G138800 [exp]	7.74	0.8525	Pt-ATMKK10.1
AT4G32295			unknown protein		Potri.018G027100 [exp]	9.43	0.7774
AT4G34050		CCoAOMT1	caffeoyl coenzyme A O-methyltr...		Potri.001G304800 [exp]	9.48	0.8704	CAM2
AT5G37600		ATGLN1;1, GLN1;...	ARABIDOPSIS THALIANA GLUTAMINE...		Potri.015G034700 [exp]	13.41	0.8605	Pt-NCPGS.3
AT1G27500			Tetratricopeptide repeat (TPR)...		Potri.015G075300 [exp]	13.63	0.8756

Compare expression of checked genes

Potri.017G100100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.