Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19800 482 / 3e-173 MIOX2 myo-inositol oxygenase 2 (.1) AT4G26260 476 / 8e-171 MIOX4 myo-inositol oxygenase 4 (.1.2) AT5G56640 467 / 2e-167 MIOX5 myo-inositol oxygenase 5 (.1) AT1G14520 450 / 1e-160 MIOX1 myo-inositol oxygenase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G069700 [exp] 469 / 4e-168 AT4G26260 465 / 2e-166 myo-inositol oxygenase 4 (.1.2) Potri.008G144500 [exp] 466 / 3e-167 AT1G14520 514 / 0.0 myo-inositol oxygenase 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006198 [exp] 468 / 7e-168 AT2G19800 452 / 3e-161 myo-inositol oxygenase 2 (.1) Lus10012923 [exp] 459 / 9e-164 AT4G26260 489 / 2e-175 myo-inositol oxygenase 4 (.1.2) Lus10035005 [exp] 452 / 3e-161 AT4G26260 477 / 7e-171 myo-inositol oxygenase 4 (.1.2) Lus10041030 [exp] 469 / 3e-160 AT2G19800 448 / 1e-151 myo-inositol oxygenase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0237 [poplar] [flax] HD_PDEase PF05153 [poplar] [flax] MIOX Myo-inositol oxygenase
Representative CDS sequence Show only first row Show all	>Potri.017G100200.2 pacid=42813140 polypeptide=Potri.017G100200.2.p locus=Potri.017G100200 ID=Potri.017G100200.2.v4.1 annot-version=v4.1 ATGACTGTCATTGTTGAGAATCCTGTCGAGGATATTGAGCTATTTGAACAGAAGAAGGAAATCCATGTCGACCCCGATGAGTTGGTGTCTGATGGTGGAT TCACTATGCCAGATAGTAATGCATTTGGCCAATCATTTAGGGACTATGAAAATGCAGAGACTGAAAGGCACCAGATTGTTGAACAAACATACAGGCTGCA ACACATTAACCAAACATATGATTACGTCAAGAAGATGAGGGAAGAATATAGCAGACTGGACAAGGCAGAGATGAGCATATGGGAATGCTGTGAGCTTCTC AATGACGTTGTGGACGAAAGTGATCCTGACTTGGATGAGCCACAAATCATGCACTTGCTGCAGTCAGCTGAAGCAATCAGAAAAGACTATCCTAACGAAG ATTGGTTGCACTTGACTGCACTTATCCATGATCTTGGAAAAATCCTCCTACTTCCTCAATTTGGAGGATTACCTCAATGGTCTGCTGTAGGTGATATATT CCCTGTTGGCTGTGCTTTTGATGAATCCAACGTCCATTATCAGTTTTTCAAGGAAAACCCAGATTTCAACAATCCAAAATACAACACCAAGAATGGAGTT TACTCTGAAGGATGTGGACTGAGTAACGTGTTGATGTCATTTGGGCACGATGACTACATGTACTTGGTTGCAAAGGAAAATGGCACGACCCTGCCTTCTG CTGCCTTGTTTGTTATCCGCTACCACTCATTTTATCCATTACACTCATGTGGAGCATACAAGCATCTGATGAACGAGGAGGATGTGGAGAACCTGAAGTG GCTTCAGATATTCAACAAGTATGATCTCTACAGCAAGAGCAAGGTCCCAATTGATGTTGAAAAAGTTAAGCCATACTATCTTTCCCTCATCGACAAGTAT TTCCCAGCAAAAGTCAAATGGTGA
AA sequence Show only first row Show all	>Potri.017G100200.2 pacid=42813140 polypeptide=Potri.017G100200.2.p locus=Potri.017G100200 ID=Potri.017G100200.2.v4.1 annot-version=v4.1 MTVIVENPVEDIELFEQKKEIHVDPDELVSDGGFTMPDSNAFGQSFRDYENAETERHQIVEQTYRLQHINQTYDYVKKMREEYSRLDKAEMSIWECCELL NDVVDESDPDLDEPQIMHLLQSAEAIRKDYPNEDWLHLTALIHDLGKILLLPQFGGLPQWSAVGDIFPVGCAFDESNVHYQFFKENPDFNNPKYNTKNGV YSEGCGLSNVLMSFGHDDYMYLVAKENGTTLPSAALFVIRYHSFYPLHSCGAYKHLMNEEDVENLKWLQIFNKYDLYSKSKVPIDVEKVKPYYLSLIDKY FPAKVKW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G19800		MIOX2	myo-inositol oxygenase 2 (.1)		Potri.017G100200 [exp]	0	1
AT4G17340		TIP2;2, DELTA-T...	tonoplast intrinsic protein 2;...		Potri.003G077800 [exp]	1.00	0.9683	Pt-TIP2.5
AT3G61980			serine protease inhibitor, Kaz...		Potri.014G108900 [exp]	2.00	0.9433
AT3G27150			Galactose oxidase/kelch repeat...		Potri.017G069500 [exp]	2.44	0.9413
AT2G38870			Serine protease inhibitor, pot...		Potri.006G212000 [exp]	4.89	0.9321
AT1G72680		ATCAD1	CINNAMYL ALCOHOL DEHYDROGENASE...		Potri.016G023360 [exp]	6.48	0.9259
AT3G04945		LCR18	low-molecular-weight cysteine-...		Potri.013G032700 [exp]	8.06	0.9091
AT1G53708		RTFL9	ROTUNDIFOLIA like 9 (.1)		Potri.003G073900 [exp]	9.89	0.9248
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.017G134200 [exp]	10.67	0.9025
AT1G63410			Protein of unknown function (D...		Potri.001G106400 [exp]	13.07	0.9228
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Potri.016G073900 [exp]	15.19	0.9126	CTS2.13

Compare expression of checked genes

Potri.017G100200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.