Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38880 1121 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G114600 [exp] 1366 / 0 AT5G38880 1110 / 0.0 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034366 [exp] 1166 / 0 AT5G38880 1121 / 0.0 unknown protein Lus10005085 [exp] 1111 / 0 AT5G38880 1081 / 0.0 unknown protein Lus10034622 [exp] 313 / 4e-97 AT5G38880 301 / 4e-93 unknown protein Lus10035251 [exp] 302 / 2e-95 AT5G38880 256 / 3e-78 unknown protein Lus10035250 [exp] 126 / 4e-34 AT5G38880 131 / 1e-36 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF14817 [poplar] [flax] HAUS5 HAUS augmin-like complex subunit 5
Representative CDS sequence Show only first row Show all	>Potri.017G100300.5 pacid=42814312 polypeptide=Potri.017G100300.5.p locus=Potri.017G100300 ID=Potri.017G100300.5.v4.1 annot-version=v4.1 ATGCAGGGGTCATCGAGCGCAGTAGCGCAACCAGAGGCCATACTAGAGTGGTTGCACAAGGAGATGGGGTATAGGCCATTAGGGCCACAGAGTGCGGCCA CTAGCAAATCTCAATTGCCCTCAATAGATGCCATAAGGAAGATTTGTCGTGGAAATATGATACCCATTTGGGGGTTTCTGATAAAGAGAGTGAAATCGGA GAAAACAGTGGAGAATATAAGGAAGAATATACTGGTACATGGTGGTGGTGGTGGGGAGAGTGGCGGTTTGGTAAATGTTGGGAAAGACGAGGGGAGGAGT AAAGGAGGGAGGAGGAAGGAGAAGGTGGGTGGGGAGGGTGGGGGTGGGTCGAGTACTGCGGAGAGTAGGGAGGTGGCATTGCAAGAGAGGGAAATAGCAG CGAAAGAGGTTGAGAGGTTGAGGAGTATTGTTAGGAGGCAGAGGAAGGATTTGAGGGCTAGAATGATTGAGGTTTCGAGGGAGGAGGCCGAGAGGAAGCG TATGCTTGATGAGCGTGCTAAGAATAGGCACAAGCAGGTCATGCTGGAGGCTTATGACCAACAATGTGATGAGGCAGCAAAAATATTTGCAGAGTACCAT AAACGTCTTCATCAATATGTTAATCAAGCAAGGGATGCTCAAAGGTTTAGCATTGACAGTTCTCTAGAAGAAGTTAGCAGCTTCAGTGCAAACAGTATTA AGGAAGCTGTTTATTCAACTGTTAAGGGAACCAAATCTGCTGATGATGTCATTCTTATTGAAACAAATTGGGAAAGAAATATCCGGAAGGCATGTGAATC TCTTGCAGTTTATATGGTCGAGAGAATACGCAACTCCTTTCCTGCTTATGAAGGAAGTGGTATTCATTTGAATCCTCAATCAGAAGCAGCCAAGTTGGGC ATGGATTTTGATGGAGATATACCTGATGATGTAAGAACTGTTATTGTGAATTGCTTGAAGAACCCTCCTCACTTACTTCGGGCAATTACTGCATACACTT TACGGCTGAAAACTTTGGTTTCTAGAGAAATTGAAAAAATTGATGTTAGAGCTGATGCTGAACTCTTAAGATACAAATATGAAAACAACAGAGTTATGGA TGTTTCTTCTACTGACACAAACTCACCATTGCACCATCAACTTTATGGCAATGGGACGATTGGAATAGACATGCCTTACAAAGGATCTCAAAATCAGCTT CTGGAAAGACAGAAAGCCCATGTTCAGCAATTTTTGGCCACTGAAGATGCACTTAATAAAGCTGCAGAAGCCAGGGACGTGGGTCAGAATCTCTTAAAAC GATTGCATGGAACTGGTGATGTAGTTTCTTCCCACTCAATTGGTATTGGAGTCACAACACAGAACATGGGCAGTCTGCGGCAATTTGAGCTGGAGGTTTG GGCCAAGGAGAGAGAAGCTGCTGGACTGAGGGCAAGCTTGAATACATTGATGTCTGAAATAGAACGCTTAAATAAATTGTGTGCAGAGAGGAAAGAGGCT GAAGATTCTTTGAGAAAGAAGTGGAAGAAGATTGAGGAGTTCGATGCACGAAGATCTGAACTTGAAGCAATATATACCGCTCTACTGAAGGTTATCATGG AGGATGCGGCTGCATTCTGGAAACAGCAACCACTGGTTGCAAGGGAGTATGCATCAACTACTATCATTCCAGCATGCACAATTGTTGCGGAGATTGCAAA CAGTGCAAAAGATCTTATTGATAAAGAAGTTAATGCTTTCTTGCGAAGTCCTGATAATAGTCTTTACATGCTTCCTTCAACTCCACAGGCACTGCTGGAG TCCATGGGTTCTAATGGATCTACAGGACCTGAAGCTGTTGCTGCTGCGGAGAAGAATGCTGCTTTATTGACAGCAAGAGCTGGCGCTAGGGATCCATCAG CAATTCCATCAATATGCCGTGTGTCTGCTGCCCTTCAGTATCCTGCTGGTTTGGAGGGTTCAGATGCTGGTTTAGCATCAGTTTTAGAGTCCCTTGAGTT CTGTTTAAAACTTCGTGGTTCTGAGGCAAGTGTGTTGGAGGACTTGGCAAAGGCAATCAATCTGGTCCATATACGGCATGATCTTGTTGAAAGTGGTCAT GCATTGTTGAACCATGCATACCGTTCTCAACAAGAATATGAAAGGACAACAAATTTATGCTTGAATTTGGCCACTGAGCAAGACAAGATTGTCTCGGAGA AATGGCTACCTGAGCTTAAGACTTCAGTTTTGAATGCCCAAAAGTGTTTGGAAGATTGCAAATACGTGAGAGGTTTGCTTGACGAGTGGTGGGAGCAACC AGCGTCTACTGTTGTTGACTGGGTTACAGTTGATGGACAAAATGTTGCTGCTTGGCATAATCACGTCAAGCAACTTCTTGCATTTTACGATAAAGAGCTC TTGTGA
AA sequence Show only first row Show all	>Potri.017G100300.5 pacid=42814312 polypeptide=Potri.017G100300.5.p locus=Potri.017G100300 ID=Potri.017G100300.5.v4.1 annot-version=v4.1 MQGSSSAVAQPEAILEWLHKEMGYRPLGPQSAATSKSQLPSIDAIRKICRGNMIPIWGFLIKRVKSEKTVENIRKNILVHGGGGGESGGLVNVGKDEGRS KGGRRKEKVGGEGGGGSSTAESREVALQEREIAAKEVERLRSIVRRQRKDLRARMIEVSREEAERKRMLDERAKNRHKQVMLEAYDQQCDEAAKIFAEYH KRLHQYVNQARDAQRFSIDSSLEEVSSFSANSIKEAVYSTVKGTKSADDVILIETNWERNIRKACESLAVYMVERIRNSFPAYEGSGIHLNPQSEAAKLG MDFDGDIPDDVRTVIVNCLKNPPHLLRAITAYTLRLKTLVSREIEKIDVRADAELLRYKYENNRVMDVSSTDTNSPLHHQLYGNGTIGIDMPYKGSQNQL LERQKAHVQQFLATEDALNKAAEARDVGQNLLKRLHGTGDVVSSHSIGIGVTTQNMGSLRQFELEVWAKEREAAGLRASLNTLMSEIERLNKLCAERKEA EDSLRKKWKKIEEFDARRSELEAIYTALLKVIMEDAAAFWKQQPLVAREYASTTIIPACTIVAEIANSAKDLIDKEVNAFLRSPDNSLYMLPSTPQALLE SMGSNGSTGPEAVAAAEKNAALLTARAGARDPSAIPSICRVSAALQYPAGLEGSDAGLASVLESLEFCLKLRGSEASVLEDLAKAINLVHIRHDLVESGH ALLNHAYRSQQEYERTTNLCLNLATEQDKIVSEKWLPELKTSVLNAQKCLEDCKYVRGLLDEWWEQPASTVVDWVTVDGQNVAAWHNHVKQLLAFYDKEL L

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G38880			unknown protein		Potri.017G100300 [exp]	0	1
AT3G14172			unknown protein		Potri.001G164900 [exp]	1.00	0.8753
AT5G09400		KUP7	K+ uptake permease 7, K+ uptak...		Potri.003G023900 [exp]	10.09	0.8539	Pt-KUP7.2
AT2G42040			unknown protein		Potri.006G193500 [exp]	15.96	0.8341
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.006G013200 [exp]	16.12	0.7979
AT4G30600			signal recognition particle re...		Potri.006G183600 [exp]	17.66	0.8234
AT1G58110	bZIP		Basic-leucine zipper (bZIP) tr...		Potri.004G219100 [exp]	23.66	0.8063
AT5G38880			unknown protein		Potri.004G114600 [exp]	26.05	0.7603
AT5G35750		AHK2	histidine kinase 2 (.1)		Potri.014G164700 [exp]	29.12	0.7580
AT4G31570			unknown protein		Potri.018G008600 [exp]	33.91	0.7973
AT5G57330			Galactose mutarotase-like supe...		Potri.006G165400 [exp]	34.89	0.8167

Compare expression of checked genes

Potri.017G100300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.