Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45070 250 / 3e-81 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G45080 249 / 1e-80 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G18590 242 / 1e-77 SOT17, ATSOT17, ATST5C ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) AT1G74100 233 / 1e-74 SOT16, ATSOT16, CORI-7, ATST5A CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) AT1G13420 230 / 2e-73 SST1, ATST4B ARABIDOPSIS THALIANA SULFOTRANSFERASE 4B, sulfotransferase 4B (.1) AT5G07010 229 / 9e-73 ATST2A ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) AT5G43690 224 / 5e-71 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G14920 221 / 5e-70 ATST4A ARABIDOPSIS THALIANA SULFOTRANSFERASE 4A, sulfotransferase 4A (.1) AT5G07000 219 / 6e-69 ATST2B ARABIDOPSIS THALIANA SULFOTRANSFERASE 2B, sulfotransferase 2B (.1) AT1G28170 213 / 1e-66 SOT7 sulphotransferase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G100500 [exp] 405 / 2e-142 AT1G13420 221 / 2e-70 ARABIDOPSIS THALIANA SULFOTRANSFERASE 4B, sulfotransferase 4B (.1) Potri.010G138501 [exp] 261 / 1e-85 AT3G45070 351 / 3e-121 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.010G138450 [exp] 261 / 2e-85 AT3G45070 350 / 1e-120 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G193200 [exp] 256 / 2e-83 AT5G07010 384 / 1e-133 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.010G138400 [exp] 255 / 4e-83 AT3G45070 337 / 1e-115 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G193400 [exp] 255 / 5e-83 AT5G07010 393 / 6e-137 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.003G193300 [exp] 254 / 2e-82 AT5G07010 378 / 4e-131 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.003G193250 [exp] 251 / 1e-81 AT5G07010 395 / 9e-138 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.011G048300 [exp] 246 / 1e-79 AT1G18590 244 / 1e-78 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008673 [exp] 236 / 2e-75 AT5G07010 429 / 3e-151 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Lus10026147 [exp] 233 / 3e-74 AT5G07010 425 / 2e-149 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Lus10017878 [exp] 230 / 3e-73 AT1G18590 289 / 3e-96 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) Lus10041611 [exp] 223 / 5e-70 AT3G45070 239 / 9e-77 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10033718 [exp] 218 / 1e-68 AT1G74100 209 / 3e-65 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Lus10003070 [exp] 217 / 4e-68 AT3G45070 219 / 2e-69 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10033716 [exp] 209 / 6e-65 AT3G45070 197 / 7e-61 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10033720 [exp] 208 / 1e-64 AT1G74100 229 / 6e-73 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Lus10034079 [exp] 206 / 2e-64 AT3G45070 206 / 1e-64 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10033719 [exp] 206 / 7e-64 AT3G45070 196 / 2e-60 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00685 [poplar] [flax] Sulfotransfer_1 Sulfotransferase domain
Representative CDS sequence Show only first row Show all	>Potri.017G100400.1 pacid=42813242 polypeptide=Potri.017G100400.1.p locus=Potri.017G100400 ID=Potri.017G100400.1.v4.1 annot-version=v4.1 ATGTTTAATAGTTGCAATAAAAAAAAAAAAAAACAATCACAATTCTCCGATCCCATCAACCCCTCTAAGCCTTGTACCATACCGGTTATGGAGAGTGGGA AAATTGATTATTCATTCCTGCCAAAAGAAAAATTCCGAGGAGATGACTATCTATGCCAATGGAATGGTTTCTGGTTCAGGCAGCCGTTCCTGGAAGCAGC CCACCAAGTCTTGAATCACTACAAGCCCCTCCCCACTGACACAGTCTTAGCTTCTTACCCCAAAACAGGCACAACATGGCTCAAAGCTTTGCTATATTCC ATCATCAATCGCTCTTCAAGGGATTCCATCCTCACCAACCATCCCCATATGCTTGTTCCCACATTAGAGATACAGCTATATGGGCCAAAAACAGGGTCTT TTGATTCTTTTGCTGGCACTGCTAATTCCTCAGCCAGGATTTTGGCTACTCATCTGCCTTACCAGGTCATTTCTGGCACCATCAATTCAACAGATTGTCG GGTTGTTTACATCACAAGAAATCCGAAGGACACCTTGGTATCATCATGGCATTTTTATCCAAAATCAAAGGAGGTTAAAGATCCATGGTCTCTAGAGGAT GCAGTGGAGAAGTTCTGCAATGGTGTTGGCAACTGTGGACCTTATTATGATCATGTTTTAGGGTACTGGAAAGAGAGCTTGGAGAGGCCTCACAAAGTCT TCTTTATCACTTATGAAGAACTGAAAAGTGACACCAAGACTCATGTCAAGAGGCTGGCTGAGTTCTTGGGGTGTCCGTTTGACGGTGATGGTAAAGAAGA GGATGTTCTGGATGAGATTGTTAGCAGTTGTAGCTTTGAGAAAATGAGTAACTATGAGGCCAATAAGTCTGATGATGGCCATATGGGCTGGCTTAAATTT CCACTCAGTTCTTTCTTTAGACAAGGAGGGACGGGAGATCACAAGAATTACTTAACTCCTGAGATGATAAACCGTGTTGACAAAATCACAGCAGAGAAGT TTCATGGGTCTGGTTTTATGTATGGCATTTAG
AA sequence Show only first row Show all	>Potri.017G100400.1 pacid=42813242 polypeptide=Potri.017G100400.1.p locus=Potri.017G100400 ID=Potri.017G100400.1.v4.1 annot-version=v4.1 MFNSCNKKKKKQSQFSDPINPSKPCTIPVMESGKIDYSFLPKEKFRGDDYLCQWNGFWFRQPFLEAAHQVLNHYKPLPTDTVLASYPKTGTTWLKALLYS IINRSSRDSILTNHPHMLVPTLEIQLYGPKTGSFDSFAGTANSSARILATHLPYQVISGTINSTDCRVVYITRNPKDTLVSSWHFYPKSKEVKDPWSLED AVEKFCNGVGNCGPYYDHVLGYWKESLERPHKVFFITYEELKSDTKTHVKRLAEFLGCPFDGDGKEEDVLDEIVSSCSFEKMSNYEANKSDDGHMGWLKF PLSSFFRQGGTGDHKNYLTPEMINRVDKITAEKFHGSGFMYGI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G45070			P-loop containing nucleoside t...		Potri.017G100400 [exp]	0	1
AT5G51350		MORE LATERAL GR...	MORE LATERAL GROWTH1, Leucine-...		Potri.018G113000 [exp]	9.00	0.8465
					Potri.003G156000 [exp]	10.58	0.8814
AT5G51550		EXL3	EXORDIUM like 3 (.1)		Potri.015G129700 [exp]	10.95	0.8458
AT3G28455		CLE25	CLAVATA3/ESR-RELATED 25 (.1)		Potri.017G074600 [exp]	13.26	0.8642	CLE25.1
AT5G05830			RING/FYVE/PHD zinc finger supe...		Potri.010G195100 [exp]	16.52	0.8226
AT4G18930			RNA ligase/cyclic nucleotide p...		Potri.011G075600 [exp]	18.49	0.7701
AT5G21090			Leucine-rich repeat (LRR) fami...		Potri.001G061600 [exp]	19.05	0.8614
AT3G57062			unknown protein		Potri.006G041600 [exp]	26.53	0.7697
AT1G29380			Carbohydrate-binding X8 domain...		Potri.001G353400 [exp]	26.90	0.8553
AT1G77700			Pathogenesis-related thaumatin...		Potri.005G173900 [exp]	28.80	0.8517

Compare expression of checked genes

Potri.017G100400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.