Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13420 221 / 3e-70 SST1, ATST4B ARABIDOPSIS THALIANA SULFOTRANSFERASE 4B, sulfotransferase 4B (.1) AT3G45080 218 / 4e-69 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G45070 218 / 5e-69 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G74100 211 / 2e-66 SOT16, ATSOT16, CORI-7, ATST5A CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) AT5G07010 211 / 6e-66 ATST2A ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) AT2G03760 207 / 5e-65 AtSOT12, AtSOT1, ATST1, RAR047, ST ARABIDOPSIS THALIANA SULFOTRANSFERASE 1, sulphotransferase 12 (.1) AT1G28170 206 / 3e-64 SOT7 sulphotransferase 7 (.1) AT1G18590 203 / 6e-63 SOT17, ATSOT17, ATST5C ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) AT5G07000 202 / 8e-63 ATST2B ARABIDOPSIS THALIANA SULFOTRANSFERASE 2B, sulfotransferase 2B (.1) AT2G14920 202 / 1e-62 ATST4A ARABIDOPSIS THALIANA SULFOTRANSFERASE 4A, sulfotransferase 4A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G100400 [exp] 402 / 6e-141 AT3G45070 250 / 3e-81 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.010G138450 [exp] 245 / 1e-79 AT3G45070 350 / 1e-120 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.010G138501 [exp] 241 / 3e-78 AT3G45070 351 / 3e-121 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G193400 [exp] 235 / 1e-75 AT5G07010 393 / 6e-137 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.003G193300 [exp] 234 / 4e-75 AT5G07010 378 / 4e-131 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.010G138400 [exp] 231 / 5e-74 AT3G45070 337 / 1e-115 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G193200 [exp] 228 / 4e-73 AT5G07010 384 / 1e-133 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.003G193250 [exp] 226 / 4e-72 AT5G07010 395 / 9e-138 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.011G048300 [exp] 224 / 2e-71 AT1G18590 244 / 1e-78 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008673 [exp] 231 / 9e-74 AT5G07010 429 / 3e-151 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Lus10026147 [exp] 228 / 7e-73 AT5G07010 425 / 2e-149 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Lus10041611 [exp] 227 / 6e-72 AT3G45070 239 / 9e-77 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10003070 [exp] 225 / 9e-72 AT3G45070 219 / 2e-69 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10034079 [exp] 213 / 4e-67 AT3G45070 206 / 1e-64 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10033718 [exp] 213 / 7e-67 AT1G74100 209 / 3e-65 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Lus10017878 [exp] 205 / 1e-63 AT1G18590 289 / 3e-96 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) Lus10033720 [exp] 203 / 4e-63 AT1G74100 229 / 6e-73 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Lus10018047 [exp] 201 / 2e-62 AT1G74100 208 / 7e-65 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Lus10031624 [exp] 201 / 3e-62 AT3G45070 209 / 2e-65 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF13469 [poplar] [flax] Sulfotransfer_3 Sulfotransferase family
Representative CDS sequence Show only first row Show all	>Potri.017G100500.1 pacid=42813577 polypeptide=Potri.017G100500.1.p locus=Potri.017G100500 ID=Potri.017G100500.1.v4.1 annot-version=v4.1 ATGGAGAATAATGGAGACTCAAACGAGGACTATGATTCATCACTACCAGCGGAAAAATGGTGCGGAGATGAACAACTGTATCAATGGAAGGGCTTTTGGT TCAGACTCCAATACCTGCCAGGAACTCGACAGGTTCTTGACAACTTCAAGCCTCTTCCTAGTGATGTTATCTTAGCTTCTTTCCCAAAAACTGGCACAAC TTGGCTCAAAGCTCTCTTATATTCCATCATCAATCGCTCTTCTAGAGTCTGTTTGAGAACCACTCATCCTCACATGCTTGTACCAACATTAGAAGTTCAA TTATATGGAGCACAACAACAATCTTTTAGTACCTTTGCCAGCACTAGTTCACCAGCCAGGATTTTGGCAACTCATCTGCCTCACCAACTCTTGGCCGACA CTGTCAAACCATCAGATTGTCGCATGATTTATGTTACTCGAAACCCCAAGGACACCCTCACATCATTCTGGCAATTTGTGTTGAAGTCTAGAAGTTATGA AGAGCCATGGCCGTTGGAGGTGGCCGTCGAGAAGTTTTGTAGCGGGGTGGTTCCTTTTGGACCTTACTATGATCATGTTCTGGGGTACTGGAAGGAGAGC TTGGAGAGGCCAGAGAAGGTGTTTTTCATTACTTATGAAGAACTCAAAGATGACACCAGGACTCATGTCAAGAGACTAGCAGATTTCTTGGGGTGTCCCT TTAATGGTGATGGTGAGGAAGAGGTCTTGGAAGAGATAGTGATAGGCTGTAGCTTTGAGAAACTGAGCAACTATGAGGTCAACAAGTCCAGTGAGCATTC ACAATGGATGAAATTGCCGTTTAGTTCCTTCTTTAGGAAAGGAGATGTCGGGGATCATAGGAATTATCTGAACAACGAAATGGTGGAACGCATTGACACA ATTACTGCTGAGAAATTTCACGAGTCAGGTTTCATGTATGGAATTAATTAG
AA sequence Show only first row Show all	>Potri.017G100500.1 pacid=42813577 polypeptide=Potri.017G100500.1.p locus=Potri.017G100500 ID=Potri.017G100500.1.v4.1 annot-version=v4.1 MENNGDSNEDYDSSLPAEKWCGDEQLYQWKGFWFRLQYLPGTRQVLDNFKPLPSDVILASFPKTGTTWLKALLYSIINRSSRVCLRTTHPHMLVPTLEVQ LYGAQQQSFSTFASTSSPARILATHLPHQLLADTVKPSDCRMIYVTRNPKDTLTSFWQFVLKSRSYEEPWPLEVAVEKFCSGVVPFGPYYDHVLGYWKES LERPEKVFFITYEELKDDTRTHVKRLADFLGCPFNGDGEEEVLEEIVIGCSFEKLSNYEVNKSSEHSQWMKLPFSSFFRKGDVGDHRNYLNNEMVERIDT ITAEKFHESGFMYGIN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G13420		SST1, ATST4B	ARABIDOPSIS THALIANA SULFOTRAN...		Potri.017G100500 [exp]	0	1
					Potri.005G078500 [exp]	2.82	0.9268
					Potri.018G104500 [exp]	3.74	0.9348
AT4G34560			unknown protein		Potri.009G119000 [exp]	4.58	0.9005
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Potri.017G053000 [exp]	5.09	0.9318
AT5G27690			Heavy metal transport/detoxifi...		Potri.005G026100 [exp]	6.32	0.9007
AT3G18670			Ankyrin repeat family protein ...		Potri.011G015700 [exp]	9.16	0.9213
AT1G60500		DRP4C	Dynamin related protein 4C (.1...		Potri.013G120000 [exp]	11.74	0.9270
AT4G21310			Protein of unknown function (D...		Potri.004G031200 [exp]	12.00	0.9198
AT3G16560			Protein phosphatase 2C family ...		Potri.010G024800 [exp]	12.68	0.8994
AT2G23950			Leucine-rich repeat protein ki...		Potri.006G179400 [exp]	14.00	0.9067

Compare expression of checked genes

Potri.017G100500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.