Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47710 337 / 1e-113 Serine protease inhibitor (SERPIN) family protein (.1) AT2G25240 306 / 1e-101 Serine protease inhibitor (SERPIN) family protein (.1) AT3G45220 305 / 5e-101 Serine protease inhibitor (SERPIN) family protein (.1) AT2G26390 294 / 1e-96 Serine protease inhibitor (SERPIN) family protein (.1) AT1G62170 240 / 3e-75 Serine protease inhibitor (SERPIN) family protein (.1), Serine protease inhibitor (SERPIN) family protein (.2) AT2G35580 238 / 4e-75 Serine protease inhibitor (SERPIN) family protein (.1) AT1G64030 236 / 4e-74 ATSRP3 serpin 3 (.1) AT2G14540 213 / 7e-65 ATSRP2 serpin 2 (.1) AT1G64010 137 / 1e-38 Serine protease inhibitor (SERPIN) family protein (.1) AT1G63280 107 / 5e-28 Serine protease inhibitor (SERPIN) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G036000 [exp] 341 / 4e-115 AT1G47710 476 / 1e-168 Serine protease inhibitor (SERPIN) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034364 [exp] 434 / 4e-151 AT1G47710 296 / 4e-97 Serine protease inhibitor (SERPIN) family protein (.1) Lus10005089 [exp] 408 / 4e-141 AT1G47710 306 / 2e-101 Serine protease inhibitor (SERPIN) family protein (.1) Lus10034362 [exp] 355 / 5e-121 AT1G47710 274 / 1e-89 Serine protease inhibitor (SERPIN) family protein (.1) Lus10002792 [exp] 350 / 1e-118 AT1G47710 495 / 6e-176 Serine protease inhibitor (SERPIN) family protein (.1) Lus10032754 [exp] 347 / 1e-117 AT1G47710 487 / 1e-172 Serine protease inhibitor (SERPIN) family protein (.1) Lus10019009 [exp] 219 / 9e-68 AT1G47710 209 / 9e-64 Serine protease inhibitor (SERPIN) family protein (.1) Lus10032600 [exp] 122 / 4e-32 AT1G47710 99 / 6e-24 Serine protease inhibitor (SERPIN) family protein (.1) Lus10040926 [exp] 119 / 3e-31 AT1G47710 115 / 2e-30 Serine protease inhibitor (SERPIN) family protein (.1) Lus10005087 [exp] 103 / 2e-25 AT2G26390 44 / 6e-10 Serine protease inhibitor (SERPIN) family protein (.1) Lus10039336 [exp] 100 / 2e-23 AT2G26390 105 / 2e-25 Serine protease inhibitor (SERPIN) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00079 [poplar] [flax] Serpin Serpin (serine protease inhibitor)
Representative CDS sequence Show only first row Show all	>Potri.017G100900.2 pacid=42814468 polypeptide=Potri.017G100900.2.p locus=Potri.017G100900 ID=Potri.017G100900.2.v4.1 annot-version=v4.1 ATGGAGGGCCAAGTACAGATCCCATCAGGAAATGTTGATACTAGCTTCTGCTTGGATATGGCATTCCATATTTTTCTGAAAGAAGCTGACGGCGCATCAA ACTTTGTGTTCTCGCCTTTTTCGTTCCATTGTATGCTGAGCCTTATTGCTGTAGGCTCAAGTGGGTCTACCCTGGAGCAGCTGCTTTCATTTCTAAAACT AAAAAGCCTCGATGAGCTGAAATCTTTTGCTTCGCAGGCTATCACTTCTGTATTATTGCCATCAAACTGGAGCGAGGACCAAACCGGAAGTCCAATCGTG TCATTTGTCAATGGTGCTTGGGTGGATCTAAGTTATCGTTTGAAGCCTTCCTTTCAGGAGGTGGTGAAAGGCGTTTACTGTGCTACAACCAAAGAGGTTG ACTTTGTAAATGAGGCTAATCAAGTGTTGAATGATATTAATTCGTGGGTGGAGACTGAAACCAGAGGAATCATCAAAAACCTTCTCCCTTCGAAGTGTTT GGGCGATGATACAACTTTAGTCCTTGCAAATGCACTCTACTTCAAAGGAACATGGGATCGGAAATTCGATGCATCAAAAACTAAATATAATGACTTCCAT CTTCTTGGTGGACAGATTGTTCAAGTTCCTTTCATGACCAGCAAGAGATACCAGAGACATCTTTATGGATGCTTTGATGGCTATAAGATTCTCAAAATTC CCTACCAAAATGGTCAAGACACCAGGCAATTCTCCATGTACTTCTTTCTTCCAGAAGCAACAGATGCCTTGCACAGTCTGATTCAAGTATTCAAATCCAG CCCTGAACTCTATACTATGCAATTCAAGTTACGAGAAGAGGATCTTCCTGAGTTTTGGATTCCAAGATTTAAGTTCTCATTCAAGTTTGAAGCCTCAAAA ACTATGAAGGAATTGGGACTGGAACTACCTTTCAAGGCTGTTGGAGAACTGTCGGAGATGGTTGATTCTGCTAAGTCCCTGTTCTTGTCAAATGTATTTC ATGCGTCCTGTATTGAGGTTAATGAAGAAGGCACGGAAGCAGCAGCTAGTACTGCTCCAAGATTGATTAGACAAAGTCGCCGGTTGAATCCTCCAAGTTT TGTAGCTGACCATCCTTTCTTATTCTTGATCAGGGAGGAGAAATCGGGAATGACACTCTTCATCGGAGCTGTGATCAACCCTCTCTTGGTGTCCTGA
AA sequence Show only first row Show all	>Potri.017G100900.2 pacid=42814468 polypeptide=Potri.017G100900.2.p locus=Potri.017G100900 ID=Potri.017G100900.2.v4.1 annot-version=v4.1 MEGQVQIPSGNVDTSFCLDMAFHIFLKEADGASNFVFSPFSFHCMLSLIAVGSSGSTLEQLLSFLKLKSLDELKSFASQAITSVLLPSNWSEDQTGSPIV SFVNGAWVDLSYRLKPSFQEVVKGVYCATTKEVDFVNEANQVLNDINSWVETETRGIIKNLLPSKCLGDDTTLVLANALYFKGTWDRKFDASKTKYNDFH LLGGQIVQVPFMTSKRYQRHLYGCFDGYKILKIPYQNGQDTRQFSMYFFLPEATDALHSLIQVFKSSPELYTMQFKLREEDLPEFWIPRFKFSFKFEASK TMKELGLELPFKAVGELSEMVDSAKSLFLSNVFHASCIEVNEEGTEAAASTAPRLIRQSRRLNPPSFVADHPFLFLIREEKSGMTLFIGAVINPLLVS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G47710			Serine protease inhibitor (SER...		Potri.017G100900 [exp]	0	1
AT5G27730			Protein of unknown function (D...		Potri.006G122500 [exp]	2.00	0.9865
AT4G19810		ChiC	class V chitinase, Glycosyl hy...		Potri.006G261800 [exp]	3.00	0.9840
AT1G77410		BGAL16	beta-galactosidase 16 (.1)		Potri.013G105100 [exp]	4.79	0.9784
AT4G19810		ChiC	class V chitinase, Glycosyl hy...		Potri.006G262001 [exp]	5.29	0.9838
AT3G54040			PAR1 protein (.1)		Potri.009G039950 [exp]	8.83	0.9871
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Potri.008G031500 [exp]	12.84	0.9838
AT2G26730			Leucine-rich repeat protein ki...		Potri.012G078100 [exp]	16.79	0.9554
AT3G48660			Protein of unknown function (D...		Potri.017G065444 [exp]	17.88	0.9827
					Potri.018G119400 [exp]	18.00	0.9700
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.010G000200 [exp]	20.04	0.9720	Pt-MALD1.2

Compare expression of checked genes

Potri.017G100900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.