Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15740 837 / 0 RRT1 O-fucosyltransferase family protein (.1) AT3G02250 830 / 0 O-fucosyltransferase family protein (.1) AT1G14020 613 / 0 O-fucosyltransferase family protein (.1) AT2G03280 580 / 0 O-fucosyltransferase family protein (.1.2) AT2G37980 415 / 4e-139 O-fucosyltransferase family protein (.1) AT1G22460 398 / 3e-133 O-fucosyltransferase family protein (.1) AT3G54100 397 / 3e-132 O-fucosyltransferase family protein (.1) AT5G35570 395 / 4e-131 O-fucosyltransferase family protein (.1) AT5G64600 390 / 9e-131 O-fucosyltransferase family protein (.1) AT5G01100 391 / 9e-130 O-fucosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G113500 [exp] 948 / 0 AT5G15740 801 / 0.0 O-fucosyltransferase family protein (.1) Potri.015G048100 [exp] 770 / 0 AT5G15740 716 / 0.0 O-fucosyltransferase family protein (.1) Potri.012G064200 [exp] 768 / 0 AT5G15740 733 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G164700 [exp] 617 / 0 AT1G14020 781 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G090600 [exp] 611 / 0 AT1G14020 776 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G161800 [exp] 410 / 2e-138 AT1G22460 678 / 0.0 O-fucosyltransferase family protein (.1) Potri.016G109700 [exp] 411 / 2e-136 AT2G37980 741 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G100400 [exp] 399 / 3e-134 AT1G22460 663 / 0.0 O-fucosyltransferase family protein (.1) Potri.006G095300 [exp] 399 / 7e-133 AT2G37980 722 / 0.0 O-fucosyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021717 [exp] 779 / 0 AT5G15740 752 / 0.0 O-fucosyltransferase family protein (.1) Lus10007975 [exp] 779 / 0 AT5G15740 772 / 0.0 O-fucosyltransferase family protein (.1) Lus10013503 [exp] 775 / 0 AT5G15740 765 / 0.0 O-fucosyltransferase family protein (.1) Lus10034651 [exp] 767 / 0 AT5G15740 754 / 0.0 O-fucosyltransferase family protein (.1) Lus10026624 [exp] 639 / 0 AT1G14020 767 / 0.0 O-fucosyltransferase family protein (.1) Lus10036785 [exp] 627 / 0 AT1G14020 772 / 0.0 O-fucosyltransferase family protein (.1) Lus10037144 [exp] 627 / 0 AT1G14020 779 / 0.0 O-fucosyltransferase family protein (.1) Lus10030437 [exp] 623 / 0 AT1G14020 760 / 0.0 O-fucosyltransferase family protein (.1) Lus10036832 [exp] 598 / 0 AT5G15740 591 / 0.0 O-fucosyltransferase family protein (.1) Lus10019195 [exp] 593 / 0 AT5G15740 587 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF10250 [poplar] [flax] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Potri.017G101300.1 pacid=42814428 polypeptide=Potri.017G101301.1.p locus=Potri.017G101300 ID=Potri.017G101300.1.v4.1 annot-version=v4.1 ATGTTAAAAATGTGGAAGACTGAGGACTCTGTTGAGGAATGGGAGATGAAAGTGAAGTTATTCGGTGGTGGAAAGGTTGACAAGTTAAAAACTTCTGTGG TTTCAAGGTCTTCAATGAAGCTGTGGATGATAAGGGCAATCACAACTGTCTTGTTATGGACTTGCGTGGTCCATTTACTGGCCTTGGGAGAGATTTGGGG GCCGAGATTGTTAAAGAGTTGGCCTTCTTGTTTTAGTAATCAAGATGCTGAGCTAACTTCTGTTCCTGCCAAACTTGTTCTGCCTCCGAAGAGAATCTAC AAGAATAATGGATATCTCATGGTTTCCTGCAATGGAGGACTCAACCAAATGCGAGCAGCAATATGTGACATGGTCGCTATTGCAAGATATCTAAATGTTA CTCTTGTTGTCCCAGAGTTGGATAAATCCTCATTTTGGAATGACCCAAGTGAGTTTCAAGACATATTTGATGTTGATCATTTCATCACTTCCTTGAGGGA TGAAGTTCGTATATTGAAAGAGCTACCGCCTAGGCTTAAAACACGAGTAAAATTGGGATTGTTCTACTCATTACCTCCTGTTAGCTGGTCAAACATTTCT TACTACACCCATCAGATTCTTCCTCTACTGCAAAAGTACAAAGTTGTACATTTGAACAAGACAGATGCTCGTCTTGCAAATAATGGACTTCCTATTGAGA TTCAAAAGTTGCGCTGCCGTGTAAATTTTAATGCTTTGAAGTTTACATCACAGATAGAAGAACTAGGTAGAAGGGTTGTTAGGATATTGAGGGAGAGAGG CCCTTTCCTGGTGCTTCATCTCAGATATGAAATGGACATGTTGGCTTTCTCTGGCTGCACTCACGGTTGCAATGATGAGGAAACAGAACAACTGACAAGA ATGAGATATGCTTATCCCTGGTGGAAGGAAAAAGATATTAGTTCTGAAATGAAAAGGAAAGAAGGTTTGTGTCCTTTGACACCTGAGGAAACTGCCCTTG TGTTAAGTGCACTTGGAATTGACCGTAATGTTCAAATTTATGTTGCTGCTGGAGAAATATATGGTGGAAAAAGAAGGATGGAGGCTTTGGCATCCGCTTT TCCTAATTTGGTCAGGAAAGAAACTCTGTTGGGACCATCAGATTTGAAGTTTTTCCAGAATCATTCATCTCAAATGGCAGCACTAGATTATCTGGTGTCC TTGGAGAGTGACATATTTGTTCCTACATATAATGGCAATATGGCTAAAGTTGTTGAAGGTCATCGCAGATTCTTAGGATTCAAGAAGACTATTTCATTGG ACAGAAAGCTTCTGGTTGGTTTAATTGATCAATACAACAAAGGCTCATTGAGCTGGGATGAATTCTCTTCTACTGTGAAGGAAGCTCATGCTGATCGGAT GGGTAGTCCAAAGGCGCGGGTTGTTATACCAGATAAACCAAAGGAAGAAGATTATTTCTATGCCAATCCACAAGAGTGTTTGCAACTGTTAGATGAACCA TTGAGAAGTTCATGA
AA sequence Show only first row Show all	>Potri.017G101300.1 pacid=42814428 polypeptide=Potri.017G101301.1.p locus=Potri.017G101300 ID=Potri.017G101300.1.v4.1 annot-version=v4.1 MLKMWKTEDSVEEWEMKVKLFGGGKVDKLKTSVVSRSSMKLWMIRAITTVLLWTCVVHLLALGEIWGPRLLKSWPSCFSNQDAELTSVPAKLVLPPKRIY KNNGYLMVSCNGGLNQMRAAICDMVAIARYLNVTLVVPELDKSSFWNDPSEFQDIFDVDHFITSLRDEVRILKELPPRLKTRVKLGLFYSLPPVSWSNIS YYTHQILPLLQKYKVVHLNKTDARLANNGLPIEIQKLRCRVNFNALKFTSQIEELGRRVVRILRERGPFLVLHLRYEMDMLAFSGCTHGCNDEETEQLTR MRYAYPWWKEKDISSEMKRKEGLCPLTPEETALVLSALGIDRNVQIYVAAGEIYGGKRRMEALASAFPNLVRKETLLGPSDLKFFQNHSSQMAALDYLVS LESDIFVPTYNGNMAKVVEGHRRFLGFKKTISLDRKLLVGLIDQYNKGSLSWDEFSSTVKEAHADRMGSPKARVVIPDKPKEEDYFYANPQECLQLLDEP LRSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G15740		RRT1	O-fucosyltransferase family pr...		Potri.017G101300 [exp]	0	1
AT4G34215			Domain of unknown function (DU...		Potri.014G022700 [exp]	1.00	0.9809
AT3G51150			ATP binding microtubule motor ...		Potri.005G116900 [exp]	1.41	0.9718
AT3G55060			unknown protein		Potri.008G047200 [exp]	2.00	0.9671
AT5G56340		ATCRT1	RING/U-box superfamily protein...		Potri.019G032500 [exp]	6.00	0.9396
AT3G27330			zinc finger (C3HC4-type RING f...		Potri.001G336766 [exp]	6.32	0.9440
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.019G123200 [exp]	6.70	0.9656	FLA14.13
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.012G014966 [exp]	8.12	0.9528
AT5G56040			Leucine-rich receptor-like pro...		Potri.015G080800 [exp]	8.24	0.9271
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.013G014200 [exp]	8.77	0.9480	Pt-FLA14.16
AT1G77610			EamA-like transporter family p...		Potri.005G177200 [exp]	10.00	0.9380

Compare expression of checked genes

Potri.017G101300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.