Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15730 548 / 0 CRLK2, AtCRLK2 calcium/calmodulin-regulated receptor-like kinase 2, Protein kinase superfamily protein (.1.2) AT5G54590 422 / 6e-146 CRLK1 calcium/calmodulin-regulated receptor-like kinase 1, Protein kinase superfamily protein (.1.2) AT3G19300 240 / 2e-72 Protein kinase superfamily protein (.1) AT1G49730 234 / 5e-70 Protein kinase superfamily protein (.1.2.3.4) AT5G56890 233 / 9e-68 Protein kinase superfamily protein (.1) AT2G28970 229 / 9e-68 Leucine-rich repeat protein kinase family protein (.1) AT2G37050 230 / 2e-67 Leucine-rich repeat protein kinase family protein (.1.2.3) AT2G28990 230 / 2e-67 Leucine-rich repeat protein kinase family protein (.1) AT5G61350 229 / 2e-67 Protein kinase superfamily protein (.1) AT4G39110 229 / 4e-67 Malectin/receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G113400 [exp] 774 / 0 AT5G15730 535 / 0.0 calcium/calmodulin-regulated receptor-like kinase 2, Protein kinase superfamily protein (.1.2) Potri.001G415300 [exp] 408 / 1e-140 AT5G54590 633 / 0.0 calcium/calmodulin-regulated receptor-like kinase 1, Protein kinase superfamily protein (.1.2) Potri.011G131200 [exp] 394 / 6e-135 AT5G54590 631 / 0.0 calcium/calmodulin-regulated receptor-like kinase 1, Protein kinase superfamily protein (.1.2) Potri.004G140301 [exp] 248 / 2e-75 AT1G49730 744 / 0.0 Protein kinase superfamily protein (.1.2.3.4) Potri.009G100400 [exp] 244 / 5e-74 AT3G19300 773 / 0.0 Protein kinase superfamily protein (.1) Potri.006G132100 [exp] 244 / 3e-72 AT2G37050 1317 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.016G084900 [exp] 242 / 9e-72 AT2G37050 1276 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.019G094200 [exp] 230 / 2e-70 AT4G29990 452 / 1e-150 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.016G140200 [exp] 237 / 9e-70 AT5G01950 1018 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008491 [exp] 615 / 0 AT5G15730 512 / 0.0 calcium/calmodulin-regulated receptor-like kinase 2, Protein kinase superfamily protein (.1.2) Lus10008540 [exp] 614 / 0 AT5G15730 509 / 3e-180 calcium/calmodulin-regulated receptor-like kinase 2, Protein kinase superfamily protein (.1.2) Lus10043083 [exp] 409 / 1e-140 AT5G54590 652 / 0.0 calcium/calmodulin-regulated receptor-like kinase 1, Protein kinase superfamily protein (.1.2) Lus10032672 [exp] 405 / 2e-139 AT5G54590 650 / 0.0 calcium/calmodulin-regulated receptor-like kinase 1, Protein kinase superfamily protein (.1.2) Lus10019844 [exp] 247 / 5e-75 AT3G19300 771 / 0.0 Protein kinase superfamily protein (.1) Lus10014071 [exp] 240 / 1e-72 AT3G19300 777 / 0.0 Protein kinase superfamily protein (.1) Lus10038174 [exp] 229 / 6e-69 AT5G48740 793 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10038595 [exp] 221 / 6e-68 AT5G54380 718 / 0.0 THESEUS1, protein kinase family protein (.1) Lus10021003 [exp] 223 / 1e-67 AT1G79620 549 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10038172 [exp] 229 / 2e-67 AT5G48740 967 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.017G101400.1 pacid=42813120 polypeptide=Potri.017G101400.1.p locus=Potri.017G101400 ID=Potri.017G101400.1.v4.1 annot-version=v4.1 ATGGTTTATAAAGGTGATTTTGTTGTTATTGGAATCTCCGTTGGTTTGGCCCTTGGTATCTTGATAGCTTCACTTGTATTTTTCGGCATAAGGTGGTACA AGAGGCGTGCTTATCTCCGACGGTGTTCAAATGATCGTAGCCTTCCAACTCTTCCAATACGCATGAATGGCTTGGGTACAAGCAATGACTTTAGTGACTC TCTTGCAAATTCCATCACCATCCAGGGAACAGAACACCCTCAGAAGAGCTCTCAGGTTTCTTCTTGGTGGAATCATCACAGTAAAGATCGGTTTGCTTCT ACATCAGGCATACTTAGATATTCTTACAAGGATATTCAGAAAGCTACTCAAAATTTCACAACAGTTTTGGGACAAGGTTCATTTGGTCCTGTATACAAAG CAGTTATGCCTACTGGAGAAATATTAGCTGTAAAGGTGCTTGCATCTAACTCAAAGCAGGGGGAGAAAGAGTTCCAAACAGAGGTATCTCTATTAGGAAG GCTGCACCACCGGAATCTTGTGAATTTGTTAGGGTATTGCATAGATAAAGGAAACCACATGTTGATCTATGAGTTCATGAGTAATGGGAGCTTAGCAAAC CACCTTTATAATGATGAAGAACAATTTTTGAGTTGGGAAGAAAGAATTCAAATTGCTCTTGATATTTCACATGGAATTGAATATCTTCATGAAGGGGCAG TCCCACCTGTCATACATCGTGATTTGAAGTCTGCAAACATATTGCTGGACCAGTCAATGAGAGCTAAAGTTGCTGATTTTGGACTTTCAAAGGAAGAGGT CTTTGATGAGCGCAACTCTGGCTTGAAAGGCACATATGGCTACATAGATCCAGTGTACATATCCACAAACAAGTTCACCATGAAGAGTGACATCTACAGT TTTGGTATTATCATGTTCGAACTTATTACAGCCATCCACCCACATCAAAACCTAATGGAATATGTTAATCTTGCTGGTATGAGCCCAGATGGTGTTGACG AAATACTAGACAAGAGGCTGGTTGGAGAATGCAACATTGAAGAAGTGAGGGGCCTAGCTACCGTTGCCCACAAATGCTTGCAAAAATTCCAAAGGAAGCG ACCCTCGATAGGAGAAGTTTCGCAGGCTATACTGAAGATAAAACAAAGGTGCCTTGCCAAGGAAGACACCATGTCTATAGAAGTTTCACGAGTTCTAACC AGGATAGACGATCAACAGGTGGAGTTGAGTAGGATGGCCAGCATAAAAGATGTGGAGTGA
AA sequence Show only first row Show all	>Potri.017G101400.1 pacid=42813120 polypeptide=Potri.017G101400.1.p locus=Potri.017G101400 ID=Potri.017G101400.1.v4.1 annot-version=v4.1 MVYKGDFVVIGISVGLALGILIASLVFFGIRWYKRRAYLRRCSNDRSLPTLPIRMNGLGTSNDFSDSLANSITIQGTEHPQKSSQVSSWWNHHSKDRFAS TSGILRYSYKDIQKATQNFTTVLGQGSFGPVYKAVMPTGEILAVKVLASNSKQGEKEFQTEVSLLGRLHHRNLVNLLGYCIDKGNHMLIYEFMSNGSLAN HLYNDEEQFLSWEERIQIALDISHGIEYLHEGAVPPVIHRDLKSANILLDQSMRAKVADFGLSKEEVFDERNSGLKGTYGYIDPVYISTNKFTMKSDIYS FGIIMFELITAIHPHQNLMEYVNLAGMSPDGVDEILDKRLVGECNIEEVRGLATVAHKCLQKFQRKRPSIGEVSQAILKIKQRCLAKEDTMSIEVSRVLT RIDDQQVELSRMASIKDVE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G15730		CRLK2, AtCRLK2	calcium/calmodulin-regulated r...		Potri.017G101400 [exp]	0	1
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Potri.009G032700 [exp]	6.08	0.8205
AT1G15000		SCPL50	serine carboxypeptidase-like 5...		Potri.008G129800 [exp]	14.28	0.7537
AT1G14780			MAC/Perforin domain-containing...		Potri.010G104600 [exp]	14.89	0.7693
AT3G17700		ATCNGC20, CNBT1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Potri.015G034000 [exp]	15.49	0.7958	ATCNGC19.5
AT1G79380			Ca(2)-dependent phospholipid-b...		Potri.010G174800 [exp]	18.33	0.7650
AT5G38600			Proline-rich spliceosome-assoc...		Potri.017G111300 [exp]	22.38	0.7891
AT1G33720		CYP76C6	"cytochrome P450, family 76, s...		Potri.015G138900 [exp]	23.81	0.7665
AT4G31980			unknown protein		Potri.018G029800 [exp]	25.09	0.7446
AT3G26020			Protein phosphatase 2A regulat...		Potri.010G054400 [exp]	25.69	0.7313
AT1G34320			Protein of unknown function (D...		Potri.013G115300 [exp]	27.83	0.7323

Compare expression of checked genes

Potri.017G101400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.