Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03890 738 / 0 UBDKGAMMA7, ATPI4KGAMMA7 ,PI4K GAMMA 7 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) AT1G26270 722 / 0 Phosphatidylinositol 3- and 4-kinase family protein (.1) AT1G13640 696 / 0 Phosphatidylinositol 3- and 4-kinase family protein (.1) AT3G56600 343 / 2e-111 Protein kinase superfamily protein (.1.2) AT2G40850 335 / 6e-108 ATPI4KGAMMA1 ,PI4K GAMMA 1 phosphoinositide 4-kinase gamma 1 (.1) AT5G24240 206 / 7e-59 Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein (.1) AT2G46500 195 / 1e-54 UBDKGAMMA4, ATPI4KGAMMA4 ,PI4K GAMMA 4 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) AT1G64460 186 / 3e-54 Protein kinase superfamily protein (.1) AT1G27570 61 / 2e-09 phosphatidylinositol 3- and 4-kinase family protein (.1.2) AT3G43950 42 / 0.0004 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G137400 [exp] 783 / 0 AT2G03890 917 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) Potri.008G112200 [exp] 724 / 0 AT2G03890 866 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) Potri.006G031600 [exp] 366 / 9e-120 AT2G40850 489 / 2e-168 phosphoinositide 4-kinase gamma 1 (.1) Potri.015G013600 [exp] 207 / 6e-59 AT5G24240 747 / 0.0 Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein (.1) Potri.012G014600 [exp] 204 / 9e-58 AT5G24240 767 / 0.0 Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein (.1) Potri.014G099000 [exp] 202 / 3e-57 AT2G46500 784 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) Potri.001G090300 [exp] 201 / 1e-56 AT2G46500 699 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005095 [exp] 763 / 0 AT2G03890 700 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) Lus10019197 [exp] 715 / 0 AT2G03890 873 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) Lus10036834 [exp] 712 / 0 AT2G03890 874 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) Lus10018104 [exp] 209 / 7e-60 AT5G24240 689 / 0.0 Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein (.1) Lus10022411 [exp] 209 / 1e-59 AT5G24240 731 / 0.0 Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein (.1) Lus10003190 [exp] 201 / 4e-57 AT2G46500 587 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) Lus10001817 [exp] 199 / 4e-56 AT2G46500 665 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) Lus10004005 [exp] 182 / 1e-52 AT2G46500 483 / 1e-169 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) Lus10030251 [exp] 179 / 2e-51 AT2G46500 484 / 3e-170 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) Lus10000011 [exp] 91 / 3e-21 AT1G26270 122 / 5e-33 Phosphatidylinositol 3- and 4-kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00454 [poplar] [flax] PI3_PI4_kinase Phosphatidylinositol 3- and 4-kinase
Representative CDS sequence Show only first row Show all	>Potri.017G101500.1 pacid=42813623 polypeptide=Potri.017G101500.1.p locus=Potri.017G101500 ID=Potri.017G101500.1.v4.1 annot-version=v4.1 ATGGAAAGAAAGCCTTCTGGAAGGAGGCGTGTATTTGTTCAGACCAAAACTGGCATTGTTTTGGGTATGGAATTAGACAGGAGTGACAATGCCCATACTG TTAAGAGGAAATTACAGCTTGCCCTCAATGTCCCAACTGAGGAGAGGTCATTGATATTTGGGGAGAAGGTGTTAAAAAACGACCTCAGTGCAGGTAGAAA TGATTCTCCACTTCTTCTTACCAAGAATTCTATGCATAGAAGCTCATCTACACCATGTCTCTCGTCCTCTGGGAAGGATCTTCAGCAGAGTGATTGGAGT GGCCCAATTGAGTTACTAGGATTTTCAGAGCACTTTGCTAAAGTAAAACAAATGGTAAATGACATTGTGAAAGCATTGAGGATTGGGGTTGATCCAATTC CTATTCATAGTGGCCTTGGTGGTACATACTATTTCAAGAATTGCCATGGTGAAAATATTGCTATTGTGAAGCCCACAGATGAGGAACCTTACGCCCCTAA CAATCCAAAAGGTTTCGTTGGAAAAGCTCTAGGGCAGCCAGGCCTCAAACGTTCAGTGCGCGTTGGAGAGACTGGGTTCAGAGAAGTGGCAGCTTACCTT CTTGACTATAATCACTTTGCCAATGTGCCCTCAACTGCCCTTGTGAAGATGACACACTCGATTTTCAATGTCAATGATGGAAATAAAAATCAACGGAGAA ACCATGTTAGCAAGATTGCATCTGACTATGGGACTTCGAGCTTTCCTGTCACTGCTGTGCATAGGATAGGAATTTTAGATATACGGATCCTTAACACTGA CAGACATGCTGGGAACCTTCTGGTCAAGAAGGTTGATGGGATTGGGAGGTTTGGTCAGGTGGAGCTCATTCCCATTGATCTTGGCCTTTGCCTTCCTGAA AGTTTGGAGGATCCATACTTTGAGTGGATCCATTGGCCGCAAGCGTCGATTCCATTCTCTGAGGATGAGCTTGAGTATATAAATAATCTTGACCCTTTCC AAGATTCTGATATGCTTCGGAGGGAACTACCAATGATTCGAGAGGCATGCCTCAGAGTCTTGGTTGTTTGTACAATTTTCCTAAAGGAAGCAGCAGCTTT TGGCTTATGTCTTGCTGAGATTGGTGAGATGATGAGCAGAGAGTTTCGAAGCCATGGAGAGGAGCCCAGTGAGCTTGAGCTTATATGCATTAAGGCAAGG AGTCTGCTCGGGGAGATGGAATATCTTGTTGACGAGGTGAAACTGGAAGACAATGAGGAGTTTCAGTTTGACATTGACTGTGAGGAGTTACGTTTGACTT CAAATATAGGAGATAAATTAGAAATGAGACCTCATTGTTTCCTGTCCAAAGCCAAAAATGTGCTAAATCCACTTTCCAAGCTAGAGGAGAGTGCGGAGGA GGAGGAGGAGGGAGAGGCAGACATTGAGGAGGAGGAGTTGAATTTAAGCAGAGATGAATACGCTGGCTCTACAGAGGACAAGATTACAAACATTTCAAGG ATGTCCATGTTATTAAAAAAAATAAGTGGCGGTGAGAACAGTTGGCGGCACGAGGGTGAGATACGGAGAAGTGGTTACCTGGCTGGTTCTTCTTCCGGAA ACAGGAGTGTTAATGAGCAGCTTCCTTCAAGCATGAGTTTTGTGACGCTAGCTGATCTGGATGAAGGGGAGTGGGTTCTGTTTCTTGAGAACTTTAAGAA ACTTTTACATCCAGCTTTCACTAATTGCGAATCTGGAAGTGCTGGTCAGAGGCAAAGACAGAGGCTTGGAACTTCCTGCCAGTTTTGA
AA sequence Show only first row Show all	>Potri.017G101500.1 pacid=42813623 polypeptide=Potri.017G101500.1.p locus=Potri.017G101500 ID=Potri.017G101500.1.v4.1 annot-version=v4.1 MERKPSGRRRVFVQTKTGIVLGMELDRSDNAHTVKRKLQLALNVPTEERSLIFGEKVLKNDLSAGRNDSPLLLTKNSMHRSSSTPCLSSSGKDLQQSDWS GPIELLGFSEHFAKVKQMVNDIVKALRIGVDPIPIHSGLGGTYYFKNCHGENIAIVKPTDEEPYAPNNPKGFVGKALGQPGLKRSVRVGETGFREVAAYL LDYNHFANVPSTALVKMTHSIFNVNDGNKNQRRNHVSKIASDYGTSSFPVTAVHRIGILDIRILNTDRHAGNLLVKKVDGIGRFGQVELIPIDLGLCLPE SLEDPYFEWIHWPQASIPFSEDELEYINNLDPFQDSDMLRRELPMIREACLRVLVVCTIFLKEAAAFGLCLAEIGEMMSREFRSHGEEPSELELICIKAR SLLGEMEYLVDEVKLEDNEEFQFDIDCEELRLTSNIGDKLEMRPHCFLSKAKNVLNPLSKLEESAEEEEEGEADIEEEELNLSRDEYAGSTEDKITNISR MSMLLKKISGGENSWRHEGEIRRSGYLAGSSSGNRSVNEQLPSSMSFVTLADLDEGEWVLFLENFKKLLHPAFTNCESGSAGQRQRQRLGTSCQF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G03890		UBDKGAMMA7, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Potri.017G101500 [exp]	0	1
AT3G14470			NB-ARC domain-containing disea...		Potri.012G121851 [exp]	5.09	0.8517
AT5G61450			P-loop containing nucleoside t...		Potri.001G125700 [exp]	14.73	0.8191
AT3G14470			NB-ARC domain-containing disea...		Potri.012G121900 [exp]	15.96	0.8463
AT3G14470			NB-ARC domain-containing disea...		Potri.012G121801 [exp]	17.05	0.8515
AT4G27190			NB-ARC domain-containing disea...		Potri.001G420000 [exp]	18.86	0.8484
AT3G14470			NB-ARC domain-containing disea...		Potri.012G121876 [exp]	19.41	0.8205
					Potri.014G003451 [exp]	25.45	0.8453
AT1G15890			Disease resistance protein (CC...		Potri.001G172300 [exp]	26.60	0.7770
AT5G38880			unknown protein		Potri.004G114600 [exp]	26.64	0.7696
AT5G45500			RNI-like superfamily protein (...		Potri.019G036900 [exp]	28.46	0.7716

Compare expression of checked genes

Potri.017G101500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.