Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G30300 916 / 0 O-fucosyltransferase family protein (.1) AT3G03810 591 / 0 EDA30 embryo sac development arrest 30, O-fucosyltransferase family protein (.1) AT4G38390 181 / 3e-49 RHS17 root hair specific 17 (.1) AT1G04910 174 / 5e-47 O-fucosyltransferase family protein (.1) AT5G64600 169 / 2e-45 O-fucosyltransferase family protein (.1) AT1G20550 169 / 5e-45 O-fucosyltransferase family protein (.1) AT1G22460 168 / 1e-44 O-fucosyltransferase family protein (.1) AT4G16650 165 / 8e-44 O-fucosyltransferase family protein (.1) AT1G76270 164 / 2e-43 O-fucosyltransferase family protein (.1) AT1G11990 163 / 8e-43 O-fucosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G113200 [exp] 1132 / 0 AT3G30300 886 / 0.0 O-fucosyltransferase family protein (.1) Potri.013G056200 [exp] 613 / 0 AT3G03810 845 / 0.0 embryo sac development arrest 30, O-fucosyltransferase family protein (.1) Potri.019G036600 [exp] 611 / 0 AT3G03810 885 / 0.0 embryo sac development arrest 30, O-fucosyltransferase family protein (.1) Potri.009G143100 [exp] 180 / 7e-49 AT1G76270 699 / 0.0 O-fucosyltransferase family protein (.1) Potri.004G183200 [exp] 180 / 1e-48 AT1G76270 713 / 0.0 O-fucosyltransferase family protein (.1) Potri.017G057300 [exp] 177 / 3e-48 AT1G04910 828 / 0.0 O-fucosyltransferase family protein (.1) Potri.001G316800 [exp] 177 / 3e-48 AT1G04910 847 / 0.0 O-fucosyltransferase family protein (.1) Potri.001G157400 [exp] 174 / 9e-47 AT4G16650 773 / 0.0 O-fucosyltransferase family protein (.1) Potri.003G077500 [exp] 174 / 2e-46 AT4G16650 785 / 0.0 O-fucosyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034356 [exp] 996 / 0 AT3G30300 895 / 0.0 O-fucosyltransferase family protein (.1) Lus10005094 [exp] 994 / 0 AT3G30300 887 / 0.0 O-fucosyltransferase family protein (.1) Lus10010654 [exp] 556 / 0 AT3G03810 840 / 0.0 embryo sac development arrest 30, O-fucosyltransferase family protein (.1) Lus10013612 [exp] 551 / 0 AT3G03810 843 / 0.0 embryo sac development arrest 30, O-fucosyltransferase family protein (.1) Lus10037830 [exp] 179 / 1e-48 AT1G04910 851 / 0.0 O-fucosyltransferase family protein (.1) Lus10028957 [exp] 177 / 8e-48 AT4G16650 771 / 0.0 O-fucosyltransferase family protein (.1) Lus10007481 [exp] 176 / 3e-47 AT4G16650 766 / 0.0 O-fucosyltransferase family protein (.1) Lus10032603 [exp] 174 / 6e-47 AT1G04910 845 / 0.0 O-fucosyltransferase family protein (.1) Lus10014444 [exp] 174 / 7e-47 AT1G20550 650 / 0.0 O-fucosyltransferase family protein (.1) Lus10023948 [exp] 173 / 2e-46 AT1G20550 697 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF10250 [poplar] [flax] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Potri.017G101600.1 pacid=42813272 polypeptide=Potri.017G101600.1.p locus=Potri.017G101600 ID=Potri.017G101600.1.v4.1 annot-version=v4.1 ATGAAAGGAGAAGGGAAGATGGTGATTATGTCCAAGATGAAGTGGGTTGGTTTAGTTGGGCTAGTTCTGTCAGCCTTTTCTCTCTTTGTACATTTTTTGC TTGCTAGATACACTGAGGAAGGCATTTCTGATTACCAGTCTTCAGTCACAATCTTTTCTTGGAGACCCATCTTTGAAAACTCTGACTTTGCCAAGAATAG TCCCTTGTACAGAAGACTATGGGGTCAAGTAAGGCGGCTTGAATCCTTACATCCAGATGCAAATCCCAGAGGATATTATGCTGATCCCCGATCAGAATCA AGTGGGTATGTGTTTGTTAGGATACAAGGTGGATTCCATGAAATAAGGAATTCGATATGTGACGTGGTTGCGATTTCTAGGCTTCTTAATGCTACTTTAG TTATTCCTGAGATCCAATCAACAACAAGCAGCAAAGGAATCAGCTCCGAGTTCAAGAGTTTTGCATACCTATATAATGAGGATCAATTCATGGCAGCTTT GGTGAAAGATGTTAAAGTTGTGAAAACCCTTCCGCAAAATCTTAAAGGTGCAAGGAGGAAAAAAAAGATCCCATCATTCAGAGTGCCTAATTCAGCTTCA CCATATTTTTATTTGCATCATGTTCTCCCAGTACTTAATAAGCATGCAGTGGTTGAACTAGTTGTTTCTGAAGGGGGGTGCTTGCAGGCTATACTTCCAC CCCATCTTGAAGAATATCAAAGGCTGAGGTGCAGAGTTGGTTTTCATGCCTTACGGTTTCGGCAAGAGGTCCAGGAACTTGCAACTAAAATATTGCATAG GTTACGGGCACCTGGTAGACCATTTATAGCCTTTGATCCTGGTATGACGAGAGATGCCTTAGCATACCATGGCTGTGCTGAACTTTTCCAGGATGTGCAC ACTGAACTTATTCAGCACAAAAGAGCTTGGATGAAGAAACATGGGATTGTTAAGGGGAAGCTTTCTGTAAATTCAGCCAAACAACGTCTTAATGGTTCAT GTCCATTAATGCCAGAAGAGGTTGGTATTCTTCTACGTGCGTATGGATATTCATGGGACACAATTTTATATATCTCCGGGGGAGAAGTTTTTGGTGGCCA GCGGACACTGATTCCTCTTCATGCCATGTTTGAAAATACTGTTGATAGAACTTCTCTCGGTGCTGCATGGGAGATGAGTAGAATTTATGGTCGTGAGGTT AACATTGTTGACACTAAATTAAGGGCTCCACCTTCTGTTGTGCAAGAAAAAAAGCTTGGAGCATGGAAAAATGCAGGCCCGCGTCCCCATCCACTTCCAC CCCCTCCAGCTCGGCCTAAATATCCACACAACATTGAAGGTTGGTGGGGTTGGGTGGCTGAGAGTGATAACGAGCCTGAGAGTACAGTAATGGAGTTGAG GACCAATGCCCATAAGCTATTATGGGAAGCAATTGACTATTTGATTTGTGTTGAAGCTGATGTTTTCATCCCTGGGTTTGACCGTGATGGGAAAGGACGT CCAAATTTTGCCAGCTTGGTAATGGGGCATAGGCTCTATCAATCAGCTGCATCTAAAACATTCCGGCTAGACAGAAAGGAAGTTGTCAAGCTTTTGGAAG AAAACCGCGAACATTTGTACCAAGCAAATCATACCTGGCTGACTTCAATACGCAAACATCTTAGAAGAAGTTTAATTGATGGTGTAATAGAAGCATCCTC AAAATCAAAGCCATTTTCTTTTCTCTCCCATCCAGCGCCTGAATGTTCTTGCTTGAGATATGATCCTACCAAACCAGTTGAGGCTTCCCTTGGAGTTATG CATAGTTGCCCTAAGTGGATGGATAGTGAGATAAAAACAAAATCGAAGGATAAAGAAACTGAAGAGGATTCTGACGAAGATGTTTCCTCATCTTCTGGAC TGTTTTTCAAGAATATTGGTGGAAATAATCAGAGTGGAGGTGGAGAATTGATCAAGGAAGAGTCTCAACTAGATGATCAAGAAGAACTTGAGGGCTCAGA CTGA
AA sequence Show only first row Show all	>Potri.017G101600.1 pacid=42813272 polypeptide=Potri.017G101600.1.p locus=Potri.017G101600 ID=Potri.017G101600.1.v4.1 annot-version=v4.1 MKGEGKMVIMSKMKWVGLVGLVLSAFSLFVHFLLARYTEEGISDYQSSVTIFSWRPIFENSDFAKNSPLYRRLWGQVRRLESLHPDANPRGYYADPRSES SGYVFVRIQGGFHEIRNSICDVVAISRLLNATLVIPEIQSTTSSKGISSEFKSFAYLYNEDQFMAALVKDVKVVKTLPQNLKGARRKKKIPSFRVPNSAS PYFYLHHVLPVLNKHAVVELVVSEGGCLQAILPPHLEEYQRLRCRVGFHALRFRQEVQELATKILHRLRAPGRPFIAFDPGMTRDALAYHGCAELFQDVH TELIQHKRAWMKKHGIVKGKLSVNSAKQRLNGSCPLMPEEVGILLRAYGYSWDTILYISGGEVFGGQRTLIPLHAMFENTVDRTSLGAAWEMSRIYGREV NIVDTKLRAPPSVVQEKKLGAWKNAGPRPHPLPPPPARPKYPHNIEGWWGWVAESDNEPESTVMELRTNAHKLLWEAIDYLICVEADVFIPGFDRDGKGR PNFASLVMGHRLYQSAASKTFRLDRKEVVKLLEENREHLYQANHTWLTSIRKHLRRSLIDGVIEASSKSKPFSFLSHPAPECSCLRYDPTKPVEASLGVM HSCPKWMDSEIKTKSKDKETEEDSDEDVSSSSGLFFKNIGGNNQSGGGELIKEESQLDDQEELEGSD

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G30300			O-fucosyltransferase family pr...		Potri.017G101600 [exp]	0	1
AT1G19270		DA1	DA1 (.1)		Potri.002G132700 [exp]	1.00	0.7703
AT1G58370		ATXYN1, RXF12	ARABIDOPSIS THALIANA XYLANASE ...		Potri.002G113066 [exp]	5.29	0.7211
AT1G76340		GONST3	golgi nucleotide sugar transpo...		Potri.008G177700 [exp]	9.00	0.6466
AT5G59070			UDP-Glycosyltransferase superf...		Potri.009G038400 [exp]	11.83	0.6439
AT1G68690		AtPERK9	proline-rich extensin-like rec...		Potri.008G111600 [exp]	12.84	0.6738
AT3G19300			Protein kinase superfamily pro...		Potri.009G100400 [exp]	14.83	0.6969
AT5G17680			disease resistance protein (TI...		Potri.019G068200 [exp]	15.09	0.7005
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Potri.007G076500 [exp]	15.16	0.6802	ATH.2
AT1G21660			Chaperone DnaJ-domain superfam...		Potri.005G181700 [exp]	19.28	0.6795
AT1G19490	bZIP		Basic-leucine zipper (bZIP) tr...		Potri.006G114600 [exp]	19.74	0.6794

Compare expression of checked genes

Potri.017G101600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.