Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14090 369 / 2e-124 UDP-Glycosyltransferase superfamily protein (.1) AT4G15550 343 / 8e-114 IAGLU indole-3-acetate beta-D-glucosyltransferase (.1) AT1G05560 339 / 2e-112 UGT75B1, UGT1 UDP-GLUCOSE TRANSFERASE 1, UDP-glucosyltransferase 75B1 (.1) AT1G05530 332 / 8e-110 UGT75B2, UGT2 UDP-GLUCOSYL TRANSFERASE 2, UDP-glucosyl transferase 75B2 (.1) AT1G05680 282 / 3e-90 UGT74E2 Uridine diphosphate glycosyltransferase 74E2 (.1) AT1G05675 273 / 4e-87 UDP-Glycosyltransferase superfamily protein (.1) AT2G31790 267 / 2e-84 UDP-Glycosyltransferase superfamily protein (.1) AT2G31750 253 / 4e-79 UGT74D1 UDP-glucosyl transferase 74D1 (.1) AT2G43840 251 / 1e-78 UGT74F1 UDP-glycosyltransferase 74 F1 (.1.2) AT1G24100 249 / 1e-77 UGT74B1 UDP-glucosyl transferase 74B1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G083700 [exp] 643 / 0 AT4G14090 374 / 3e-125 UDP-Glycosyltransferase superfamily protein (.1) Potri.014G146000 [exp] 427 / 5e-147 AT4G15550 429 / 2e-147 indole-3-acetate beta-D-glucosyltransferase (.1) Potri.006G055600 [exp] 410 / 4e-140 AT4G15550 442 / 2e-152 indole-3-acetate beta-D-glucosyltransferase (.1) Potri.002G236500 [exp] 409 / 6e-140 AT4G15550 436 / 3e-150 indole-3-acetate beta-D-glucosyltransferase (.1) Potri.016G052500 [exp] 409 / 7e-140 AT4G15550 419 / 3e-143 indole-3-acetate beta-D-glucosyltransferase (.1) Potri.002G236400 [exp] 409 / 7e-140 AT1G05560 442 / 1e-152 UDP-GLUCOSE TRANSFERASE 1, UDP-glucosyltransferase 75B1 (.1) Potri.015G071900 [exp] 296 / 9e-96 AT1G24100 427 / 5e-147 UDP-glucosyl transferase 74B1 (.1) Potri.007G140500 [exp] 287 / 2e-92 AT2G43840 463 / 3e-161 UDP-glycosyltransferase 74 F1 (.1.2) Potri.017G032300 [exp] 279 / 4e-89 AT1G05675 465 / 6e-162 UDP-Glycosyltransferase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019989 [exp] 312 / 2e-101 AT4G15550 379 / 5e-127 indole-3-acetate beta-D-glucosyltransferase (.1) Lus10015515 [exp] 312 / 2e-101 AT4G15550 379 / 3e-127 indole-3-acetate beta-D-glucosyltransferase (.1) Lus10021610 [exp] 306 / 3e-99 AT1G05560 372 / 6e-125 UDP-GLUCOSE TRANSFERASE 1, UDP-glucosyltransferase 75B1 (.1) Lus10008742 [exp] 275 / 1e-87 AT2G43840 478 / 6e-167 UDP-glycosyltransferase 74 F1 (.1.2) Lus10020559 [exp] 275 / 2e-87 AT2G43820 436 / 3e-150 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10009412 [exp] 271 / 3e-86 AT2G43820 474 / 1e-165 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10010712 [exp] 267 / 2e-84 AT1G24100 462 / 1e-160 UDP-glucosyl transferase 74B1 (.1) Lus10020556 [exp] 266 / 3e-84 AT2G43820 472 / 1e-164 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10017825 [exp] 263 / 1e-82 AT2G43840 392 / 2e-133 UDP-glycosyltransferase 74 F1 (.1.2) Lus10014148 [exp] 261 / 2e-82 AT2G43840 407 / 2e-139 UDP-glycosyltransferase 74 F1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00201 [poplar] [flax] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Potri.017G101800.1 pacid=42813911 polypeptide=Potri.017G101800.1.p locus=Potri.017G101800 ID=Potri.017G101800.1.v4.1 annot-version=v4.1 ATGGAGAACAAGCACTTTCTCCTAATCTGCATGCCTGGCCAGGGCCACATAAATCCTATGTTCCAACTTGGCAAGTGCCTGATACATGCCGGTGCCGGGA GAGTCACTTTTGCCACTACAGCACATGGTCTCACTCAGGTTGAAGCCTTCCCTTCACTTGAAAATTTACACTATGCCTCTTTCTCAGATGGTTTTGATGA TGGTATCAAACCCACCAACGATCCACACCGCATCATGGCTGAACTCAAACGTGTTGGCTCACAAACCTTAACTGAGCTCCTCCTGTCTCTCTCCAAGGAG GGTAATCCGGTGAGCTACCTAATCTACACCCTTCTCCTCCCTTGGGCTGCTGATATTGCACGTGACATGTCCATCCCATCTGCTTTCCTTTGTATTCTGT CTACTACTGCCTTTGCTCTATGTTACTGTTTCTTTGAAGAACGTGATGGTGTATATGATAGTAATGACAATAGGCCTCCAAGCTCAATTGAAATGCCTGG ATTGCCACTGTTCACTAGTAAAGATATGCCTTCCTTCCTTTTGCCCAATGATCCACATGCATCAACACTCATCCCTATCTTTCAACACCATATCCAAGCA CTAGAAAAAGACTCAAACCCATGTGTGCTACTCAACACCTCTGATTGCGTAGAAGAAGAAGCAATCAGACTCATCAGTAATCTTAACCCAATCCCAATCG GACCATTAGTTTCCTATGCATTTTTAGATGAAAACAACTCAACAGACTCGTCTTGTGGAATTGACTTGTTTGAAAAATCTGCAGAATACAGTCAGTGGTT GAATTCAAAACCAGAAGGGTCAGTAGTTTATGTTTCCTTTGGGAGTCTAGCTGTGTTGCAAAGAAATCAAATGGAAAAGATATTGCTCGGTCTAACTAGT AACTGCAGGCCATTCTTATGGGTAATCCGACCTTCAGGTAGTAATGATAGAGAGTTCGAGGAGAAGATAAGGGACAAAGTGAATGAAGAAGTAGGGTTGA TAGTGCCATGGTGTTCACAAATGGAGGTGCTCACTCACGAATCGATAGGCTGTTTTATGATGCATTGTGGATGGAACTCAACACTGGAGAGCCTAGCAAC AGGTGTTCCTGTTGTGGGGTTCCCACAGTTCTCTGACCAGACAACAAATGCAAAGATGGTGGAAGAGGTGTGGAGGACCGGAGTTAGAGCAAGAGTGAAT GAAGATGGTACTTTAGAAGCAGAAGAGATTGCGAGGTGTTTGGACATGGTGATGGGAGGTGGTCAGAGAGGAGAGGAAATAAGAAGGAATGCTAAAAAGT GGAAAGGATTGACTTTGGAGGCTGTGATGGAGGGGGGTTCTTCATATAACAATCTCAATGCCTTTTTAGAAAAGATTGAATGA
AA sequence Show only first row Show all	>Potri.017G101800.1 pacid=42813911 polypeptide=Potri.017G101800.1.p locus=Potri.017G101800 ID=Potri.017G101800.1.v4.1 annot-version=v4.1 MENKHFLLICMPGQGHINPMFQLGKCLIHAGAGRVTFATTAHGLTQVEAFPSLENLHYASFSDGFDDGIKPTNDPHRIMAELKRVGSQTLTELLLSLSKE GNPVSYLIYTLLLPWAADIARDMSIPSAFLCILSTTAFALCYCFFEERDGVYDSNDNRPPSSIEMPGLPLFTSKDMPSFLLPNDPHASTLIPIFQHHIQA LEKDSNPCVLLNTSDCVEEEAIRLISNLNPIPIGPLVSYAFLDENNSTDSSCGIDLFEKSAEYSQWLNSKPEGSVVYVSFGSLAVLQRNQMEKILLGLTS NCRPFLWVIRPSGSNDREFEEKIRDKVNEEVGLIVPWCSQMEVLTHESIGCFMMHCGWNSTLESLATGVPVVGFPQFSDQTTNAKMVEEVWRTGVRARVN EDGTLEAEEIARCLDMVMGGGQRGEEIRRNAKKWKGLTLEAVMEGGSSYNNLNAFLEKIE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G14090			UDP-Glycosyltransferase superf...		Potri.017G101800 [exp]	0	1
AT5G46410		SSP4	SCP1-like small phosphatase 4 ...		Potri.001G353700 [exp]	1.41	0.9258
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Potri.001G381700 [exp]	1.73	0.9193	Pt-SRG1.3
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Potri.007G088018 [exp]	2.44	0.9265
AT1G65430		ATARI8, ARI8	ARABIDOPSIS ARIADNE 8, ARIADNE...		Potri.002G131300 [exp]	3.87	0.9127
AT1G08230		ATGAT1	L-GAMMA-AMINOBUTYRIC ACID TRAN...		Potri.005G219300 [exp]	4.89	0.9124
					Potri.009G149000 [exp]	6.32	0.8929
AT1G64950		CYP89A5	"cytochrome P450, family 89, s...		Potri.007G088154 [exp]	7.48	0.9165
AT5G47650		ATNUDX2, ATNUDT...	ARABIDOPSIS THALIANA NUDIX HYD...		Potri.016G006000 [exp]	8.36	0.9052
AT3G17700		ATCNGC20, CNBT1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Potri.012G038700 [exp]	8.48	0.9073	Pt-ATCNGC19.3
AT4G30080	ARF	ARF16	auxin response factor 16 (.1)		Potri.016G090300 [exp]	9.32	0.8823

Compare expression of checked genes

Potri.017G101800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.