Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15720 265 / 3e-86 GLIP7 GDSL-motif lipase 7 (.1) AT1G71691 236 / 4e-75 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT2G03980 227 / 1e-71 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G71250 224 / 2e-70 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G33811 222 / 1e-69 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G08460 219 / 2e-68 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G18970 217 / 9e-68 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT5G45670 216 / 1e-67 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G29670 212 / 9e-66 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G29660 211 / 1e-65 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G112700 [exp] 603 / 0 AT5G15720 249 / 7e-80 GDSL-motif lipase 7 (.1) Potri.010G137100 [exp] 252 / 2e-81 AT1G71691 221 / 3e-69 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.011G076500 [exp] 231 / 2e-73 AT5G45670 533 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G067600 [exp] 231 / 4e-73 AT1G71250 473 / 9e-168 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G102400 [exp] 224 / 3e-70 AT1G33811 534 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G102500 [exp] 219 / 2e-68 AT1G71691 481 / 2e-170 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.004G064500 [exp] 218 / 4e-68 AT1G29670 527 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G076600 [exp] 215 / 7e-67 AT1G71691 477 / 5e-169 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.012G068700 [exp] 206 / 2e-63 AT1G74460 549 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011997 [exp] 224 / 2e-70 AT5G45670 555 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10016929 [exp] 220 / 1e-68 AT1G71691 473 / 2e-167 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10011998 [exp] 214 / 2e-66 AT1G29670 493 / 4e-176 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002777 [exp] 213 / 9e-66 AT5G45670 548 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10039152 [exp] 212 / 1e-65 AT1G71250 508 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002775 [exp] 209 / 1e-64 AT1G29670 497 / 1e-177 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10016918 [exp] 203 / 3e-62 AT2G23540 381 / 6e-131 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10039877 [exp] 202 / 5e-62 AT5G37690 527 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Lus10000893 [exp] 201 / 1e-61 AT1G33811 504 / 3e-180 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10021664 [exp] 201 / 2e-61 AT1G74460 526 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF00657 [poplar] [flax] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Potri.017G102100.2 pacid=42813377 polypeptide=Potri.017G102102.1.p locus=Potri.017G102100 ID=Potri.017G102100.2.v4.1 annot-version=v4.1 ATGAGTACACTAATTATCTTTTCTGTGCTCCATCTTCTCATTTCTTTGGTTTGCGGTGCACCACTTGCACCAGCACTGTACGTATTCGGCGATTCGCTGT TCGATAGCGGCAATAACAATCTCTTGCCCACCGTTTCCAAGGCTAATTTCAAGCCTTATGGTGTTGATTTTGCCAAAGGAGATACAGGAAGATTCACTAA CGGTAGATTGGTCCCAGATTTTATAGCTGAATTTCTCGGGCTGCCGTATCCTCCGCCGTGTATAAGCATCCGAACATCTACACCAGTAACTGGTTTGAAT TATGCGTCGGCATCCTGTGGCATTCTTCCTGAAACTGGACAGTCTACGGGGAAGTGCTTGAGTTTGGATGACCAGATCGATTTATTTCAGCGTACAGTTA AGTCAAGCTTACCAAACCACTTCGAAGGTCCAAACGAGCTGATGAAGTACTTGTCCAAGTCTATATTTGTAGTTTGCATTGGCAGTAATGACTACATGAG TAACTACTTATCTGACACAAGCAAGCATAATACTCCTCAAGAATTTGCTCATCTCCTTTTGGATAAACTTTCACTGCATTTTCAGAGGCTATATAATCTA GGAGCCAGGAAAGTTGTGATGTATGAGATTGGTCCCATTGGTTGCATCCCATCAATGACGAGGAAAATTACACATAATGGAAAATGTGCTGAAGAGTTAA ACGAGCTTGTATCATACTTCAACGATAATCTTCTTGGAATGCTTCAGAACTTGACATCCACTCTCCCCAACTCTATTTTTGCTCGAGGTCTTGCTTATTC GCTAGGCTACGATGCAATTATGAATCCTTCTAAATATGGCTTACTTGACACAAGCAACCCATGTTGCACAACCTGGGCCAATGGGACCTCCGCTTGCATT CCTAAGCTAAAACCGTGCCCTAATCCTAACCAACACTACTTTTTTGATGCTTATCACCTCACTGAATCTGTATATTCAGTCTTGGCAAGCCATTGTATCA ATGATAGATCGGTTTGCTCTCCTACTCTAAAGGAACTCGTGCAAATGTAA
AA sequence Show only first row Show all	>Potri.017G102100.2 pacid=42813377 polypeptide=Potri.017G102102.1.p locus=Potri.017G102100 ID=Potri.017G102100.2.v4.1 annot-version=v4.1 MSTLIIFSVLHLLISLVCGAPLAPALYVFGDSLFDSGNNNLLPTVSKANFKPYGVDFAKGDTGRFTNGRLVPDFIAEFLGLPYPPPCISIRTSTPVTGLN YASASCGILPETGQSTGKCLSLDDQIDLFQRTVKSSLPNHFEGPNELMKYLSKSIFVVCIGSNDYMSNYLSDTSKHNTPQEFAHLLLDKLSLHFQRLYNL GARKVVMYEIGPIGCIPSMTRKITHNGKCAEELNELVSYFNDNLLGMLQNLTSTLPNSIFARGLAYSLGYDAIMNPSKYGLLDTSNPCCTTWANGTSACI PKLKPCPNPNQHYFFDAYHLTESVYSVLASHCINDRSVCSPTLKELVQM

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G15720		GLIP7	GDSL-motif lipase 7 (.1)		Potri.017G102100 [exp]	0	1
AT5G42930			alpha/beta-Hydrolases superfam...		Potri.014G027500 [exp]	5.91	0.9900
AT1G61680		ATTPS14	terpene synthase 14 (.1.2)		Potri.011G032300 [exp]	7.74	0.9677
AT5G05600			2-oxoglutarate (2OG) and Fe(II...		Potri.006G101100 [exp]	9.16	0.9927
AT5G42930			alpha/beta-Hydrolases superfam...		Potri.014G027400 [exp]	11.48	0.9883
AT5G05600			2-oxoglutarate (2OG) and Fe(II...		Potri.006G101200 [exp]	11.66	0.9904
AT4G39720			VQ motif-containing protein (....		Potri.006G006300 [exp]	11.74	0.9606
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.008G033500 [exp]	13.85	0.9898
AT1G68620			alpha/beta-Hydrolases superfam...		Potri.008G118400 [exp]	15.19	0.9895
AT3G11840		PUB24	plant U-box 24 (.1)		Potri.009G016100 [exp]	16.49	0.9895
AT4G32060			calcium-binding EF hand family...		Potri.018G118089 [exp]	16.61	0.9328

Compare expression of checked genes

Potri.017G102100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.