Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15710 744 / 0 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G30950 125 / 1e-31 UFO UNUSUAL FLORAL ORGANS, F-box family protein (.1) AT1G27340 113 / 3e-27 Galactose oxidase/kelch repeat superfamily protein (.1) AT3G61590 98 / 4e-22 HWS, HS HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) AT5G43190 72 / 2e-13 Galactose oxidase/kelch repeat superfamily protein (.1) AT4G33160 69 / 2e-12 F-box family protein (.1) AT1G76920 68 / 3e-12 F-box family protein (.1) AT3G57580 62 / 2e-10 F-box and associated interaction domains-containing protein (.1) AT5G49610 56 / 2e-08 F-box family protein (.1) AT1G51320 56 / 3e-08 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G112400 [exp] 809 / 0 AT5G15710 753 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G160900 [exp] 127 / 2e-32 AT1G30950 554 / 0.0 UNUSUAL FLORAL ORGANS, F-box family protein (.1) Potri.003G074100 [exp] 122 / 1e-30 AT1G30950 528 / 0.0 UNUSUAL FLORAL ORGANS, F-box family protein (.1) Potri.001G057100 [exp] 122 / 3e-30 AT1G27340 613 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.003G171300 [exp] 121 / 4e-30 AT1G27340 628 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.002G118700 [exp] 107 / 2e-25 AT5G43190 352 / 7e-120 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.014G016200 [exp] 105 / 7e-25 AT5G43190 277 / 2e-90 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.014G093200 [exp] 103 / 4e-24 AT3G61590 538 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.002G166500 [exp] 101 / 3e-23 AT3G61590 542 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035147 [exp] 744 / 0 AT5G15710 721 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10031955 [exp] 743 / 0 AT5G15710 719 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10015775 [exp] 129 / 5e-33 AT1G27340 598 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10037030 [exp] 128 / 3e-32 AT1G27340 615 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10007740 [exp] 114 / 2e-27 AT5G43190 292 / 2e-94 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10007755 [exp] 107 / 3e-25 AT1G30950 514 / 0.0 UNUSUAL FLORAL ORGANS, F-box family protein (.1) Lus10018690 [exp] 107 / 4e-25 AT1G30950 514 / 0.0 UNUSUAL FLORAL ORGANS, F-box family protein (.1) Lus10003029 [exp] 107 / 4e-25 AT3G61590 531 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10007855 [exp] 104 / 2e-24 AT3G61590 531 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10010610 [exp] 103 / 3e-24 AT5G43190 327 / 2e-110 Galactose oxidase/kelch repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF00646 [poplar] [flax] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Potri.017G102300.5 pacid=42813045 polypeptide=Potri.017G102300.5.p locus=Potri.017G102300 ID=Potri.017G102300.5.v4.1 annot-version=v4.1 ATGGATGGTAGTCCTGGAGAATCATCTGAATCTGGGTCTATTGTATCTAATTCTCACTCGTTGAAAAATGGGGGTTTGCATGATGACGATGGTTGTCCTA GGCAAGTGTCACCAATTAGAATTGGTGGGTCGAGGAATACAAGTCCTATCGGTTGTGTTGGATCAAGGAATACCAGCCCTTCTCGGCAAAGGGTGATTAA GACCAAGCCGCGTGGTTTAGATGAGGAAACGGTAGCTACATTTGGCAAGGTTGTTCACCCAGATGTTCAAATGGAGGATAACATATGGGCAATGTTGCCT GAGGACCTGTTGAACGAGATTTTATTAAGGGTTCCTCCATTTATGATCTTTCGTCTTCGTTCAGTTTGTAAAAGGTGGAATTCAATTCTCCAAGATAGTT GTTTTCTTAAATTTCACTCACAAGTGCCCTCTCATGGGCCTTGTCTTTTGACATTTTGGAAGAACTTGCAGACCCCACAATGTTCAGTTTTCAGCTTGCC CCTGAAAGCTTGGTATAGAATTCCGTTTACATTTTTGCCACAGTGGGCATTTTGGTTGGTTGGTTCTTCAGGAGGCCTTGTCTGTTTTTCTGGACTTGAT GGGCTAACTTTCAAAACTTTAGTTTGTAATCCGCTCACGCAAACTTGGAGAACATTACCAGGCATGCATTATAATCAGCAAAGGCAGTTGATAATGGTTG TGGATAGAATAGACTGCTCATTCAAGGTGATAGCCACTGGTGATATTTTTGGGGACAGGTCATTGCCTACTGAAGTGTATGATTCAAAACTTGACAGATG GTCGCTTCACCAGATAATGCCTGCAGTCAACCTTTGCTCCTCAAAGATGGCATATTGTGACTCTAGATTGTACCTGGAAACCCTTTCACCGCTTGGTTTG ATGATGTATAGGCTTGACCCTGGTTACTGGGAACACATTCCGGCAAGATTTCCCAGGTCCTTGCTGGATGGATATCTGGTAGCCGGCACTCAGAAGCGTC TGTTTTTGGTTGGAAGGATTGGCCTTTATAGTACTCTTCAGAGTATGAGGATTTGGGAATTGGATCATGCAAAGATTACGTGGGTGGAGATTAGCAGGAT GCCGCCAAAGTATTTTCGAGCTCTGTTGAGGTTATCAGCTGAAAGATTCGAGTGCGTTGGTCAGGACAACTTGATTTGCTTTACATCTTGGAATCAAGGA AAAGGTCTTCTATATGATGTGGATAAGAAGGTCTGGTCTTGGATTGCTGGATGTGCTCTTCAATCATACAACAGCCAAGTCTGTTTCTATGAGCCAAGAT TTGATGCGTCCATCTATTGA
AA sequence Show only first row Show all	>Potri.017G102300.5 pacid=42813045 polypeptide=Potri.017G102300.5.p locus=Potri.017G102300 ID=Potri.017G102300.5.v4.1 annot-version=v4.1 MDGSPGESSESGSIVSNSHSLKNGGLHDDDGCPRQVSPIRIGGSRNTSPIGCVGSRNTSPSRQRVIKTKPRGLDEETVATFGKVVHPDVQMEDNIWAMLP EDLLNEILLRVPPFMIFRLRSVCKRWNSILQDSCFLKFHSQVPSHGPCLLTFWKNLQTPQCSVFSLPLKAWYRIPFTFLPQWAFWLVGSSGGLVCFSGLD GLTFKTLVCNPLTQTWRTLPGMHYNQQRQLIMVVDRIDCSFKVIATGDIFGDRSLPTEVYDSKLDRWSLHQIMPAVNLCSSKMAYCDSRLYLETLSPLGL MMYRLDPGYWEHIPARFPRSLLDGYLVAGTQKRLFLVGRIGLYSTLQSMRIWELDHAKITWVEISRMPPKYFRALLRLSAERFECVGQDNLICFTSWNQG KGLLYDVDKKVWSWIAGCALQSYNSQVCFYEPRFDASIY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G15710			Galactose oxidase/kelch repeat...		Potri.017G102300 [exp]	0	1
AT2G40540		ATKUP2, ATKT2, ...	potassium transporter 2 (.1.2)		Potri.013G083400 [exp]	11.87	0.8221	Pt-KT2.2
AT5G13420			Aldolase-type TIM barrel famil...		Potri.003G161900 [exp]	16.43	0.8095
AT2G20780		AtPLT4	Major facilitator superfamily ...		Potri.013G135200 [exp]	21.28	0.8046
AT1G11790		AtADT1, ADT1	Arabidopsis thaliana arogenate...		Potri.004G013400 [exp]	21.54	0.7862	PDT1
AT5G17920		ATCIMS, ATMETS,...	methionine synthesis 1, COBALA...		Potri.009G152800 [exp]	25.61	0.8041
AT5G03120			unknown protein		Potri.016G087000 [exp]	26.55	0.7870
AT1G16220			Protein phosphatase 2C family ...		Potri.001G473300 [exp]	33.04	0.8005
AT2G42320			nucleolar protein gar2-related...		Potri.016G051500 [exp]	38.00	0.7833
AT4G13930		SHM4	serine hydroxymethyltransferas...		Potri.001G320400 [exp]	39.49	0.7974
AT5G17920		ATCIMS, ATMETS,...	methionine synthesis 1, COBALA...		Potri.019G038268 [exp]	41.76	0.7999

Compare expression of checked genes

Potri.017G102300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.