Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G30380 527 / 0 alpha/beta-Hydrolases superfamily protein (.1.2) AT4G24760 420 / 2e-146 alpha/beta-Hydrolases superfamily protein (.1) AT5G14390 416 / 7e-145 alpha/beta-Hydrolases superfamily protein (.1) AT3G01690 403 / 5e-140 alpha/beta-Hydrolases superfamily protein (.1) AT5G38220 372 / 4e-128 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT1G13610 367 / 1e-125 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G66900 345 / 2e-118 alpha/beta-Hydrolases superfamily protein (.1) AT2G24320 335 / 4e-114 alpha/beta-Hydrolases superfamily protein (.1) AT4G31020 333 / 2e-113 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G32190 312 / 2e-103 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G112300 [exp] 647 / 0 AT3G30380 509 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.008G112600 [exp] 499 / 1e-177 AT3G30380 458 / 1e-161 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.010G136900 [exp] 497 / 1e-176 AT3G30380 464 / 3e-164 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.001G340000 [exp] 448 / 2e-157 AT5G14390 511 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.015G087100 [exp] 432 / 3e-151 AT4G24760 560 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.012G090800 [exp] 427 / 2e-149 AT4G24760 549 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.017G117633 [exp] 388 / 3e-134 AT5G38220 468 / 9e-167 alpha/beta-Hydrolases superfamily protein (.1.2.3) Potri.004G097300 [exp] 381 / 2e-131 AT5G38220 469 / 3e-167 alpha/beta-Hydrolases superfamily protein (.1.2.3) Potri.006G188100 [exp] 345 / 3e-118 AT4G31020 440 / 3e-157 alpha/beta-Hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031953 [exp] 577 / 0 AT3G30380 571 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10035148 [exp] 577 / 0 AT3G30380 579 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10022307 [exp] 417 / 6e-145 AT5G14390 547 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10036842 [exp] 399 / 1e-137 AT3G30380 423 / 2e-147 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10042075 [exp] 395 / 3e-136 AT4G24760 523 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10018081 [exp] 404 / 5e-133 AT5G50230 766 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10017617 [exp] 363 / 2e-124 AT5G38220 508 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3) Lus10033575 [exp] 359 / 1e-122 AT5G38220 511 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3) Lus10000544 [exp] 351 / 4e-119 AT3G01690 488 / 1e-173 alpha/beta-Hydrolases superfamily protein (.1) Lus10040038 [exp] 341 / 3e-116 AT4G31020 491 / 3e-177 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF12695 [poplar] [flax] Abhydrolase_5 Alpha/beta hydrolase family
Representative CDS sequence Show only first row Show all	>Potri.017G102500.9 pacid=42814029 polypeptide=Potri.017G102500.9.p locus=Potri.017G102500 ID=Potri.017G102500.9.v4.1 annot-version=v4.1 ATGGGGGCGGTGACATCGACGATGGCGGCGAAGTTCGCGTTTTTTCCGCCGAGTCCGCCGTCGTATGAGTTGGAGGAGGAGGAGGAGGAGGAGGAGGCGG AGGATTGTGGAAAGAAGTTAAGGATGGTGATGGGGGTATCTGTACGTAGTAACAACAACAATAATAATACTAATAGGAAAAAAGTTGATGTGTTGAAGTT GGAGACGAAGAGAGGGAATCAGGTGGTGGCGGTGTATTTTAAGAATCCTGCGGCGTCGTTGACGGTGCTATACTCGCATGGAAATGCAGCTGATCTAGGA CAGATGTATGATTTGTTTTGTGAGCTCAGTTTGCATCTCCGTGTTAACTTGATGGGGTATGATTATAGCGGGTATGGACAGTCAACTGGAAAGCCAACTG AGCAGAATACATATGCTGACATAGAAGCTGCATATAGGTGCCTCGAGGAGAAATATGGGGTGAAAGAAGAAGATGTTATCTTATATGGACAGTCAGTTGG GAGTGGACCCGCTTTAGATTTGGCAACACGGTTACCGAAGTTAAGGGCTGTGGTTCTTCACAGCCCTATTGCTTCTGGTCTTCGTGTAATGTATCCAGTG AAGAGAACTTATTGGTTCGACATATACAAGAACATCGATAAAATACCTTTGGTCAATTGTCCTGTACTGGTTATTCATGGAACTGCTGATGATGTCGTGG ATTGGTCCCATGGTAAGCAGCTTTGGGAGTGTTGTAAAGAGAAGTATGAACCATTATGGGTGAAGGGAGGGAATCATTGTGACTTGGAGCTTTTCCCGCA ATACATCAAGCATCTCAAGAAGTTCATTTCGGCCATTGAGAAATCATCTCATCTGAGAAATGTTTCTGGGCCCATTGTGGATCGAACAGAGGATCATCGA AAGAGCACAGATTTTAGAGAGGCTTCTATATCAAGCATAGATCAGAGAGAGCGGTGTAGGTTAAGTGCTGAGCAAAATGAAAAGCCTAGGTTAAGCATAG ACTGCAGAGAGAAATCAAGATGCAGCACTGATAGGAGAGAGAAATCAAGAAAAAGTATGGATCGCCCTGAGAGAGATAGCAATGGTTCATACCAGCATGA GAAAGCGAGGAATAGCATTGATCGATTTGGGGGCATGATAAGATCTGTTGGTTTGTGCAATATTGATTGTTTCAAGCCCACAGCGACAGCCATCTGA
AA sequence Show only first row Show all	>Potri.017G102500.9 pacid=42814029 polypeptide=Potri.017G102500.9.p locus=Potri.017G102500 ID=Potri.017G102500.9.v4.1 annot-version=v4.1 MGAVTSTMAAKFAFFPPSPPSYELEEEEEEEEAEDCGKKLRMVMGVSVRSNNNNNNTNRKKVDVLKLETKRGNQVVAVYFKNPAASLTVLYSHGNAADLG QMYDLFCELSLHLRVNLMGYDYSGYGQSTGKPTEQNTYADIEAAYRCLEEKYGVKEEDVILYGQSVGSGPALDLATRLPKLRAVVLHSPIASGLRVMYPV KRTYWFDIYKNIDKIPLVNCPVLVIHGTADDVVDWSHGKQLWECCKEKYEPLWVKGGNHCDLELFPQYIKHLKKFISAIEKSSHLRNVSGPIVDRTEDHR KSTDFREASISSIDQRERCRLSAEQNEKPRLSIDCREKSRCSTDRREKSRKSMDRPERDSNGSYQHEKARNSIDRFGGMIRSVGLCNIDCFKPTATAI

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G30380			alpha/beta-Hydrolases superfam...		Potri.017G102500 [exp]	0	1
AT2G15780			Cupredoxin superfamily protein...		Potri.009G106000 [exp]	1.00	0.9515
AT3G18950			Transducin/WD40 repeat-like su...		Potri.009G109500 [exp]	2.44	0.9206
AT4G33150		LKR/SDH, SDH	lysine-ketoglutarate reductase...		Potri.006G134450 [exp]	3.46	0.8964
AT5G51760		AHG1	ABA-hypersensitive germination...		Potri.015G133900 [exp]	3.87	0.9114
AT2G21490		LEA	dehydrin LEA (.1)		Potri.004G158500 [exp]	4.47	0.9103
AT1G61560		ATMLO6, MLO6	MILDEW RESISTANCE LOCUS O 6, S...		Potri.011G058900 [exp]	6.00	0.8850
AT3G48530		KING1	SNF1-related protein kinase re...		Potri.009G118700 [exp]	7.41	0.8804
AT5G51060		ATRBOHC, RHD2	ROOT HAIR DEFECTIVE 2, A. THAL...		Potri.015G109800 [exp]	7.93	0.8659	RHD2.2
AT3G14440		SIS7, ATNCED3, ...	SALT TOLERANT 1, SUGAR INSENSI...		Potri.011G112400 [exp]	10.24	0.9049
AT5G52300		LTI65, RD29B	RESPONSIVE TO DESSICATION 29B,...		Potri.012G141300 [exp]	10.39	0.8792

Compare expression of checked genes

Potri.017G102500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.