Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15700 1331 / 0 DNA/RNA polymerases superfamily protein (.1.2) AT1G68990 1246 / 0 MGP3 male gametophyte defective 3 (.1.2) AT2G24120 1160 / 0 PDE319, SCA3 SCABRA 3, PIGMENT DEFECTIVE 319, DNA/RNA polymerases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G111600 [exp] 1736 / 0 AT5G15700 1326 / 0.0 DNA/RNA polymerases superfamily protein (.1.2) Potri.010G136700 [exp] 1350 / 0 AT1G68990 1248 / 0.0 male gametophyte defective 3 (.1.2) Potri.008G112800 [exp] 1332 / 0 AT1G68990 1269 / 0.0 male gametophyte defective 3 (.1.2) Potri.018G103300 [exp] 1191 / 0 AT2G24120 1381 / 0.0 SCABRA 3, PIGMENT DEFECTIVE 319, DNA/RNA polymerases superfamily protein (.1.2) Potri.006G181100 [exp] 1184 / 0 AT2G24120 1359 / 0.0 SCABRA 3, PIGMENT DEFECTIVE 319, DNA/RNA polymerases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005097 [exp] 1351 / 0 AT5G15700 1289 / 0.0 DNA/RNA polymerases superfamily protein (.1.2) Lus10034355 [exp] 1350 / 0 AT2G24120 1276 / 0.0 SCABRA 3, PIGMENT DEFECTIVE 319, DNA/RNA polymerases superfamily protein (.1.2) Lus10035150 [exp] 1321 / 0 AT5G15700 1273 / 0.0 DNA/RNA polymerases superfamily protein (.1.2) Lus10031952 [exp] 1318 / 0 AT5G15700 1274 / 0.0 DNA/RNA polymerases superfamily protein (.1.2) Lus10019208 [exp] 1229 / 0 AT1G68990 1245 / 0.0 male gametophyte defective 3 (.1.2) Lus10036844 [exp] 1199 / 0 AT1G68990 1244 / 0.0 male gametophyte defective 3 (.1.2) Lus10022181 [exp] 1109 / 0 AT2G24120 1300 / 0.0 SCABRA 3, PIGMENT DEFECTIVE 319, DNA/RNA polymerases superfamily protein (.1.2) Lus10010771 [exp] 671 / 0 AT2G24120 814 / 0.0 SCABRA 3, PIGMENT DEFECTIVE 319, DNA/RNA polymerases superfamily protein (.1.2) Lus10010770 [exp] 421 / 3e-140 AT2G24120 464 / 2e-157 SCABRA 3, PIGMENT DEFECTIVE 319, DNA/RNA polymerases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00940 [poplar] [flax] RNA_pol DNA-dependent RNA polymerase PF14700 [poplar] [flax] RPOL_N DNA-directed RNA polymerase N-terminal
Representative CDS sequence Show only first row Show all	>Potri.017G105801.1 pacid=42813444 polypeptide=Potri.017G105801.1.p locus=Potri.017G105801 ID=Potri.017G105801.1.v4.1 annot-version=v4.1 ATGTGGAGAAACGTCGCAAAACAAGCCACTTTGAAATCCCAATCAAAGTCCCTCAATTTCCCTTCATTTCCAAGAACTTACAGCTTTTTAGGAGCCTCTA AAGAACCCATCTTTTTTGAGAAACTGAAGTTCCATTCGCTTAATAACACAAGTCCACGACTGAGTTTTCGAGCAATTGGCGAAATATCAACCCATGAAGA TTTTATGGGAAAACCCAGTTTTATTTTTTTGAGAAATAGTGATAGTACTAATGGGAATTGGTGTGCTGGATTTTGTCCAAGAGGGTATGTGAGTGTAGCT GAGGCAGTGTCATCAACAGATGTTGAAGATAATGTGTATGGTGCGGATGAAGTGCAAGAATTGCTGCCAGAAATGAGGAAAGAAGAGGAGAAAGAGGAGC ACTTTAGGAGGAGGAGGCTACATGCTAACCCTGGAGTAGGGTCAAGGAAGCATAGGGTCTTAAGGAGAAGGCAAGTGAAGATTGAGGCGGAAGCATGGGA ACTGGCAACGAAAGAATATAAGGAGCTTTTGAAGGATATGTGTGAGCATAAGTTGGCTCCTAATTTGCCATATATGAAGAGTTTGTTCCTTGGTTGGTTT GAGCCTTTTAGAGACGCAATTGCGAAAGAGCAGGAGTTGATTAGAACGGGGAAGAGTAGGCAGGGTTATGCTCCGTATTTTGATCTGTTGCCAGCTGACA AGATGTCTGTTATTGCAATGCATCAACTCGCAGCAATGGTAATGACAGGTGGGGAACATGGATGTGCAAGAGTTGTGACTGCTGCTTGTATGATTGGTGA TGCAATTGAGCAGGAGATTAGAATACACAATATCTTGGAGAAAACAAGGAAGAAAAAGGAAAAGACTTATGATAGCAAGAATGGTGTAGAAGGTGAATCC CCTGCTGTCATGAAGGAACAAGAAAACCTAAGAAAAAAGGTCACTGATTTGATTAAAAAACAAAAGCTGCCAGCTGTGAGGAAGATTGTGAAGGGGAAGG ATGATTCAAAACCATGGAATGCAGATGCTAGGGCTAAGGTTGGAAGCCGTCTAATTGAATTGCTGTTACAAACAGCTTATATACAGCCTCCCTGTGATCA GTTAGCTGATAGTCCATCTGAACCTCGACCTGCATTTGTACATACATTCAGAACTGTGTCATATGAAAATAAGAAGGGCGCGAAAAAATATGGTGTTATT CAATGTGACCCACTAGTCCTCAAAGGCCTAGAGAAAACTGCTAGGCACATGGTGATTCCTTATATGCCAATGTTGGTGCCACCACTTAGATGGAGAGGTT ATGATAAAGGAGCTCACTTGTTCTTACCATCCTATGTCATGCGGATACATGGTGCTAAACAGCAACGTGAAGCAGTTAAGAGGGCACCTAGGAAGCAGCT ACGACCAGTTTTTGAGGCCCTGGATACGCTAGGGAATACCAGATGGAGGGTAAATAAGAGGGTACTTAGTGTTGTTGATAGAATATGGAGTAATGGAGGC TGTCTTGCTGATTTAGTAGACCACAGTGATGTTCCTTTACCTGAGAAGCCAGAAACAGAAGATGAAGCACTACTTAAGAAGTGGAAGTGGAAACTCAGAG GAGTGAAAAAAGAGAACAAGGAAAGACATGCACAGCGTTGTGACATAGAACTTAAACTTGCTGTAGCACGGAAGATGAAAGATGAAGAGGGTTTCTATTA TCCACACAATATTGACTTTCGTGGGCGTGCCTACCCCATGCACCCATACTTAAACCATCTTGGATCAGATCTGTGCCGGGGGATTTTGGAGTTCGCAGAG GGACGCCCTCTTGGAAAGTCAGGCTTACGCTGGCTGAAGATACACATTGCAAATTTATTTGCTGGTGGTGTAGACAAGCTATCTTATGAGGGACGGATAG CTTTTACTGAGAATCACCTTGATGATATATTTGATTCCGCAGACAAACCACTTGACGGAAAGCGTTGGTGGTTGCATGCAGAAGATCCATTTCAGTTCTT GGCTGTGTGCATTAACCTAACTGAAGCTTTGAGAAGCTCCTCGCCAGAAACATATATTTCACATATTCCTGTTCATCAGGATGGTTCCTGCAATGGCCTA CAACACTACGCTGCACTTGGAAGAGACAAGTTGGGAGCAGCTGCTGTTAATCTAGTTGCAGGAGAGAAGCCTGCAGATGTCTACTCGGGAATAGCTGCTA GAGTACTTGATATCATGCGGAGGGATGCACAGAAAGATCCAGATGTTTTTCCTGATGCATTGCGTGCAAAAGAATTAATTAACCAGGTGGATAGGAAATT GGTGAAACAGACAGTGATGACATCTGTATATGGTGTAACTTACATTGGTGCTAGAGACCAGATCAAAAGGAGGTTAAAGGAACGTGGTATCACAGAGGAG TCAGATATCTTTGGTTGTTCTTGCTATGCTGCAAAGGTAACCTTAACTGCCTTAGGAGAGATGTTTGAAGCTGCACGAAGTATCATGAACTGGCTTGGGG ATTGTGCAAAGATTATCGCATCTGAAAATGAGCCAGTGCGGTGGACAACTCCCCTAGGACTTCCTGTTGTACAACCTTATCGTAAATTAGGGACGCGAAG TATCAAAACTTCCCTACAGGTTTTAATACTACAAAAAGAAACTGACAAGGTTATGGTCCAACGACAGAGAACAGCTTTCCCACCAAATTTTGTTCATTCC CTTGATAGTTCTCATATGATGATGACTGCAGTTGCCTGCAAAGGGGCAGGCTTAAACTTTGCAGGAGTTCACGATTCATATTGGACGCATGCATGTGATG TGGATGAAATGAACAGGATACTGAGGGAAAAGTTTGTTGAACTCTATGAAACACCTATATTGGAGAATTTGTTGGAGAGCTTTGAAAAGTCTTTTCCCAC GTTGTCTTTTCCGCCTTTGCCTGACCGGGGAGACTTTGAGCTGAGGGAAGTGTTGGAATCACCTTATTTCTTTAACTGA
AA sequence Show only first row Show all	>Potri.017G105801.1 pacid=42813444 polypeptide=Potri.017G105801.1.p locus=Potri.017G105801 ID=Potri.017G105801.1.v4.1 annot-version=v4.1 MWRNVAKQATLKSQSKSLNFPSFPRTYSFLGASKEPIFFEKLKFHSLNNTSPRLSFRAIGEISTHEDFMGKPSFIFLRNSDSTNGNWCAGFCPRGYVSVA EAVSSTDVEDNVYGADEVQELLPEMRKEEEKEEHFRRRRLHANPGVGSRKHRVLRRRQVKIEAEAWELATKEYKELLKDMCEHKLAPNLPYMKSLFLGWF EPFRDAIAKEQELIRTGKSRQGYAPYFDLLPADKMSVIAMHQLAAMVMTGGEHGCARVVTAACMIGDAIEQEIRIHNILEKTRKKKEKTYDSKNGVEGES PAVMKEQENLRKKVTDLIKKQKLPAVRKIVKGKDDSKPWNADARAKVGSRLIELLLQTAYIQPPCDQLADSPSEPRPAFVHTFRTVSYENKKGAKKYGVI QCDPLVLKGLEKTARHMVIPYMPMLVPPLRWRGYDKGAHLFLPSYVMRIHGAKQQREAVKRAPRKQLRPVFEALDTLGNTRWRVNKRVLSVVDRIWSNGG CLADLVDHSDVPLPEKPETEDEALLKKWKWKLRGVKKENKERHAQRCDIELKLAVARKMKDEEGFYYPHNIDFRGRAYPMHPYLNHLGSDLCRGILEFAE GRPLGKSGLRWLKIHIANLFAGGVDKLSYEGRIAFTENHLDDIFDSADKPLDGKRWWLHAEDPFQFLAVCINLTEALRSSSPETYISHIPVHQDGSCNGL QHYAALGRDKLGAAAVNLVAGEKPADVYSGIAARVLDIMRRDAQKDPDVFPDALRAKELINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGITEE SDIFGCSCYAAKVTLTALGEMFEAARSIMNWLGDCAKIIASENEPVRWTTPLGLPVVQPYRKLGTRSIKTSLQVLILQKETDKVMVQRQRTAFPPNFVHS LDSSHMMMTAVACKGAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYETPILENLLESFEKSFPTLSFPPLPDRGDFELREVLESPYFFN

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G15700			DNA/RNA polymerases superfamil...		Potri.017G105801 [exp]	0	1
AT5G08630			DDT domain-containing protein ...		Potri.019G008541 [exp]	2.64	0.7234
AT3G14470			NB-ARC domain-containing disea...		Potri.004G194800 [exp]	3.74	0.7823	RGA.63
AT1G11950			Transcription factor jumonji (...		Potri.004G006200 [exp]	7.34	0.7166
AT5G21160			LA RNA-binding protein (.1.2.3...		Potri.001G220100 [exp]	10.19	0.7185
AT1G60200			splicing factor PWI domain-con...		Potri.010G094700 [exp]	17.08	0.7357
AT2G27760		IPPT, ATIPT2	tRNAisopentenyltransferase 2 (...		Potri.009G147600 [exp]	20.97	0.7296
AT1G13790		FDM4	factor of DNA methylation 4, X...		Potri.001G240666 [exp]	22.91	0.6755
AT5G64200		ATSC35, At-SC35	ARABIDOPSIS THALIANA ORTHOLOG ...		Potri.002G095800 [exp]	24.00	0.6537
AT1G32550		FdC1	ferredoxin C 1, 2Fe-2S ferredo...		Potri.003G176400 [exp]	25.49	0.5946
AT5G67610			Uncharacterized conserved prot...		Potri.007G005500 [exp]	26.38	0.6978

Compare expression of checked genes

Potri.017G105801 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.