Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15680 3580 / 0 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019255 [exp] 3478 / 0 AT5G15680 3488 / 0.0 ARM repeat superfamily protein (.1) Lus10035141 [exp] 3174 / 0 AT5G15680 3135 / 0.0 ARM repeat superfamily protein (.1) Lus10031961 [exp] 2898 / 0 AT5G15680 2930 / 0.0 ARM repeat superfamily protein (.1) Lus10031962 [exp] 1202 / 0 AT5G15680 1224 / 0.0 ARM repeat superfamily protein (.1) Lus10035142 [exp] 479 / 8e-155 AT5G15680 541 / 3e-178 ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF14225 [poplar] [flax] MOR2-PAG1_C Cell morphogenesis C-terminal PF14228 [poplar] [flax] MOR2-PAG1_mid Cell morphogenesis central region
Representative CDS sequence Show only first row Show all	>Potri.017G106100.2 pacid=42814190 polypeptide=Potri.017G106100.2.p locus=Potri.017G106100 ID=Potri.017G106100.2.v4.1 annot-version=v4.1 ATGAAAGCAGGAGGCACCGGCGCCGGTGCTGCGAAGCAGATTGTGGATTCGCTGCTTCAGCGGTTTCTCCCTCTCGCAAGACGCCGTATCGAAACCGCTC AAGCTCAGAATATGGTGATTGATAACTCATGGATGCTGGTTTTGGATTCTTTGGCTATGATTGCACGCCATACTCCCGTTCCTCTTCTCGAAGCTCTTCT TAAATGGAGAGAGAGTGAATCTCCAAAGGGTGCAAATGATGCGTCTACATTCCAAAGAAAGCTTGCAGTGGAGTGCATTTTTTGTTCAGCATGTATCCGT TTTGTGGAATGCTGCCCACAGGAGGGACTCACTGAGAAGCTGTGGTCTGGGCTCGAAAATTTTGTTTTTGACTGGCTGATTAATGCTGACAGGGTTGTTA GCCAGGTTGAATATCCCTCATTGGTTGATTCGCGAGGGCTTCTTCTGGACTTAGTCGCTCAGCTCTTAGGTGCCTTATCTCGTATCAGGTTTAGTTCTGT AACTGAACGCTTTTTCATGGAACTAAATACACGTCGAATTGACACTAGTGTTGCCCGTAGTGAAACACTCAGCATCATTAATGGGATGCGTTACCTGAAG CTTGGGGTTAAGACTGAAGGGGGACTGAATGCATCAGCTTCCTTTGTGGCGAAAGCAAATCCTCTTAGCCGTTTTCCTCCTAAACGCAAAAGTGAGCTTC ACCATGCACTGTGTAATATGCTTTCAAACATTTTGGCTCCACTAGCAGATTGTGGAAAGGGCCAATGGCCCCCAACAGGTGTGGAAAATGCACTTACTTT GTGGTATGAAGCTGTTGGACGAATAAGAGGGGTGCTTATCCCTTGGATGGACAGACAAAGCAAACATATAGCTGTTGGGTACCCTCTGGTGACTCTTCTT CTCTGTCTTGGTGATCCTCAAGTATTCCACAATAACTTGAGCCCTCACATGGAGCAACTCTATAAGCTTTTAAGAGACAAGAACCACCGATTCATGTCCT TGGACTGCCTTCATCGAGTTTTGAGGTTCTACTTAAGTGTTCATGCAGCTAGCCAGGCCCTAAACCGTATATGGGACTACTTAGACAGTGTGACTTCTCA ACTCTTAACAGTTCTGAAGAAAGGAATGCTTACTCAGGATGTCCAACATGACAAACTTGTTGAATTTTGTGTAACTATTGCTGAACATAACCTTGATTTT GCCATGAACCATATGATATTAGAATTGCTGAAGCAAGACAGTCCAAGTGAAGCAAAAGTGATTGGTCTCCGTGCTTTGCTTGCCATAGTTATGTCACCTT CAAGCGAGCACATCGGCTTAGAAATATTTAAAGGGCATGATATCGGCCATTACATTCCAAAAGTGAAGGCTGCAATCGAATCAATTTTGAGATCTTGTCA CAGGATCTACAGTCAGGCACTTTTGACTTCCTCAAAGACCACAATTGATGCTGTAACCAAGGAAAAGTCTCAGGGATATCTTTTCCGGTCAGTCCTGAAG TGTATACCATACCTGATAGAGGAAGTTGGCAGAAGTGATAGAATTACTGAAATAATTCCACAACATGGAATAAGCATTGATCCTGGTGTTCGCGAGGAAG CAGTGCAAGTATTGAACCGCATTGTTAGCTATCTTCCACATCGTAGATTTGCAGTTATGAGAGGGATGGCCAACTTTATCCTTCGGCTTCCCGATGAATT CCCTCTTCTCATCCAAACATCATTGGGGCGCCTGCTGGAACTAATGCGCTTTTGGAGAAGTTGTTTGAACAATGATCTAGAATTCCAGGCTGATGATGCA AAGCGTGGAGTGCAGCGAAATGATGGATTTAAGAAGTCTTCTTTCCAACAATCTGAAGTGATAGAGTTTCGTGCATCGGAGATTGATGCAGTTGGTCTCA TCTTCCTTAGTTCTGTGGACAGCCAGATTAGGCATACAGCATTGGAGTTATTGCGTTGTGTACGTGCTTTAAGGAATGACATACGAGACCGTACATTACG TGAGCAACTGGACCATAATTTAAGAAATGAAGTGGAACCAATATTTGTGATTGATGTCCTTGAAGAACATGGGGATGACATTGTTCAGAGCTGTTATTGG GACACTGGGCGCCCATTTGATATGAGACGAGAATCCGATGCAATTCCTCCTGAAGTGACACTTCAATCGATCATATTTGAGACTCCTGATAAGAATAGGT GGGCTAGGTGTCTTAGTGAACTCGTCAAATATGCTGCTGATCTATGCCCAAGCTCTGTTCAGGATGCAAAGGTGGAGGTCATCCAACGCCTTGCTCACAT TACTCCCATTGAGTTAGGTGGGAAGGCTCATCAGTCACAAGATGCAGATAACAAACTGGATCAATGGCTCATGTATGCAATGTTTGCATGTTCATGTCCA CCAGATAGTAGAGAATCTGGTGGCTTAACAGCTACCAAAGATCTCTACCATCTTATTTTCCTCTCTCTAAAATCTGGATCTGAAACAAACATACATGCAG CAACCATGGCTCTTGGCCACTCACATCTGGAAGCTTGTGAAATAATGTTTAGTGAGCTGTCATCATTTATTGATGAGATATCTTTGGAAACTGAGGGAAA ACCTAAATGGAAGGTACAAAGTCAAAAACCTCGCCGTGAGGAACTGCGCATTCACATTGCGAATATATACCGAACTGTTGCTGAGAATATCTGGCCTGGC ACACTGGGGCATAAACGACTTTTCCGTCTCCATTATCTCAGGTTCATTGATGAAACAACAAGGCAGATCTTATCAGCACCCCCTGAGAGCTTCCAAGAAA TGCAACCTCTCCGCTATGCACTTGCTTCTGTTCTGAGATCCCTTGCACCTGAATTTGTTGAGGCAAGGTCCGAGAAGTTCGATCTCCGAACTAGAAAACG ACTCTTTGATCTTCTCCTCTCTTGGAGTGATGACACTGGCAGCACATGGGGGCAGGATGGAGTTAGTGATTACCGACGTGAAGTTGAGCGCTATAAGGCC TCGCAGCATAGCCGTTCAAAAGATTCAATAGACAAAATTTCATTTGATAAAGAACTGAATGAACAAATTGAGGCAATCCAGTGGGCTTCCATGAATGCAA TGGCTTCACTTTTACATGGGCCTTGCTTTGATGACAATGCAAGAAAAATGAGTGGTCGGGTGATATCTTGGATCAATAGTTTGTTCAATGATCCTGCTCC TAGGGCTCCATTTGGTTACTCTCCATCAACCCCATCTTATTCCAAGTATGTAGAAAGTGGGCGTGGAGCTGCTGGTCGTGATAGACAAAGGGGTAGTCAC CATCGTGTCTCTTTAGCAAAATTGGCTTTAAAGAACCTTCTCCTCACAAACTTGGACCTTTTTCCCGCTTGCATTGATCAGTGCTACTACTCTGATGCTG CTATAGCCGATGGTTACTTCAGTGTGCTTGCTGAGGTCTACATGTGCCAAGAGATACCAAAATGTGAAATACAGAGGCTCTTGAGCCTTATCCTCTATAA AGTCGTTGACCCAAATAGACAGATCCGTGACGATGCCCTTCAAATGCTAGAGACACTTTCTGTCCGCGAGTGGGCTGGGGATGGCATTGAGGGTTCAGGA AGCTATCGAGCTGCTGTTGTTGGTAACCTCCCCGATTCCTACCAACAATTCCAGTATAAGCTCTCTTGCAAACTTGCCAAAGATCATCCTGAATTAAGCC AGCTTCTCTGTGAGGAGATCATGCAGAGGCAACTTGATGCTGTTGATATAATAGCACAACATCAAGTCTTAACCTGCATGGCTCCATGGATTGAGAACCT CAATTTCTGGAAACTCAAGGACTCAGGTTGGAGTGAAAGATTATTGAAGAGCCTCTACTATGTGACCTGGCGACATGGGGATCAGTTCCCTGATGAAATT GAAAAACTATGGAGCACAATTGCTAGCAAGCCCAGGAATATTAGTCCAGTTTTAGATTTCTTAATAACAAAAGGGATTGAAGATTGTGATTCAAATGCAT CTGCTGAAATAAGCGGTGCATTTGCCACATATTTCTCTGTTGCAAAGCGGGTGAGTCTATATTTAGCACGAATATGTCCACAGCGCACAATTGATCACCT GGTTTATCAATTGGCTCAGCGGATGTTAGAAGATAGCGTTGAACCAGTTGTGCCAAGTGCAAGTAAGGGTGAGGCAAATGGAAATTTTGTGTTGGAATTC TCTCAGGGGCCTGCAGCAGCCCAAATTTCAACTGTTGTGGACACCCAGCCACATATGTCACCATTACTCGTTCGGGGTTCACTTGATGGTCCCCTCAGGA ATACTAGTGGAAGTCTGAGCTGGCGAACAGCTGGTGTGACGGGACGAAGTGTCTCAGGCCCTCTAAGTCCAATGCCTCCTGAGTTGAACATTGTTCCTGT AACCGCAGGAAGGTCAGGCCAGCTTCTTCCAGCTTTGGTGAACATGTCAGGTCCTTTAATGGGAGTTAGAAGTTCAACAGGAAGTTTGCGAAGTCGGCAT GTTTCTCGGGATAGTGGGGATTACCTCATTGACACTCCAAACTCTGGTGAAGATGGGTTGCATCCTGGAGTTGGTATGCATGGTGTCAGTGCCAAAGAGC TCCAGTCGGCCTTGCAAGGGCATCAACATTCACTCACTCATGCTGATATAGCGTTGATTCTACTGGCAGAAATTGCATACGAGAATGATGAAGATTTTCG CGAACATTTGCCTCTTCTTTTTCATGTCACATTTGTTTCGATGGATAGCTCAGAAGATATTGTGCTAGAGCACTGCCAGAATTTGCTTGTTAATCTCTTA TACTCACTTGCAGGCCGACACTTGGAATTGTATGAGGTGGAAAACAATGACGGAGAGAACAAACAGCAGGTTGTGAGCCTAATCAAGTATGTCCAGTCAA AGCGTGGGAGCATGATGTGGGAAAATGAGGATCCCACTGTTGTGAGATCTGAACTTCCAAGTGCAGCGCTCCTGTCTGCGCTAGTTCAGAGTATGGTTGA TGCAATCTTCTTCCAAGGAGATCTCCGTGAGACTTGGGGTGCTGAGGCACTCAAATGGGCCATGGAGTGCACGGCAAGACACCTTGCATGTCGCTCACAC CAGATATATCGTGCATTGCGGCCTAGTGTCACAAGTGACACATGTGTATTACTACTTAAATGCCTCCATAGGTGCCTAGGAAACCCAGCACCCCCAGTTT TGGGATTCATCATGGAAATTCTGTTGACACTGCAAGTAATGGTGGAAAATATGGAGCCAGAAAAGGTGATACTTTACCCCCAACTCTTTTGGGGTTGTGT GGCCATGATGCACACAGATTTTGTTCATGTGTACTGCCAGGTGCTTGAGCTCTGCTCGCGCGTAATTGATCGTTTATCATTCGAGGACCAAACAACAGAA AACGTGCTGCTTTCAAGCATGCCTCGTGATGAGCTTGACACTGGTGGTGACATTGGGGATTTTCAAAGAATTGAATCGCTGGCATCACCCAGTGGGAATT TGCCAGCATTTGAAGGGTTGCAGCCGCTTGTGCTTAAAGGGCTCATGTCTACTGTCAGTCATGGCGTCTCCATTGAGGTCCTGTCACGGATCACAGTGCA TTCATGTGACTCAATATTTGGGGATGGAGAGACAAGGCTCCTCATGCACATCACAGGCTTACTTCCCTGGCTCTGCTTGCAGCTCAGTAAGGATACAGTG ACAGTGCCTGCTTTGCCACTCCAACAGCAATGGCAGAAGGCTTGCTCTGTTGCTAACAACATTGCACATTGGTGTCGAGCAAAATCATTGGATGGATTAG CCACTGTTTTTGTGATTTATGCCCATGGAGAGATCAAAAGCATCGATACCCTTCTCGCTTGTGTCTCCCCTCTAATGTGCAATGAGTGGTTTCCAAAACA TTCTGCCCTGGCTTTTGGACACTTGCTTCAGCTACTTGAGAAAGGGCCTGTTGAGTATCAGCGTGTGATACTGCTAACGCTCAAGTCATTGCTCCAGCAC ACTCCCATGGATGCTTCTCAAAGTCCACGTATGTATGCAATTGTGTCCCAGCTGGTGGAGAGCTCTTTGTGCTTCGAGGCACTGAGTGTACTGGAAGCCC TTTTGCAGAGCTGCAGTTCATTGACCGGTTCCCACCCTCCTGAGCCAGGGTCATATGACAACGGAGCTGATGAAAAGCTGTTAGCTCCTCAGACCTCTTT CAAGGCTCGGAGCGGGCCCTTGCAATATGCTATGGGTTCAGGATTTGGTACGGGTCACATGCCAGCAGCACAAGGGGGGGCTGAATCAGGGATTCCATCT AGAGAGGTGGCGTTGCAGAACACGCGCCTTATCCTTGGGCGAGTACTTGACAACTGTGCTTTAGTGAGGAAAAGGGATTTTAGGAGGCTAGTGCCTTTTG TAACAAATATTGGAAACCCATAG
AA sequence Show only first row Show all	>Potri.017G106100.2 pacid=42814190 polypeptide=Potri.017G106100.2.p locus=Potri.017G106100 ID=Potri.017G106100.2.v4.1 annot-version=v4.1 MKAGGTGAGAAKQIVDSLLQRFLPLARRRIETAQAQNMVIDNSWMLVLDSLAMIARHTPVPLLEALLKWRESESPKGANDASTFQRKLAVECIFCSACIR FVECCPQEGLTEKLWSGLENFVFDWLINADRVVSQVEYPSLVDSRGLLLDLVAQLLGALSRIRFSSVTERFFMELNTRRIDTSVARSETLSIINGMRYLK LGVKTEGGLNASASFVAKANPLSRFPPKRKSELHHALCNMLSNILAPLADCGKGQWPPTGVENALTLWYEAVGRIRGVLIPWMDRQSKHIAVGYPLVTLL LCLGDPQVFHNNLSPHMEQLYKLLRDKNHRFMSLDCLHRVLRFYLSVHAASQALNRIWDYLDSVTSQLLTVLKKGMLTQDVQHDKLVEFCVTIAEHNLDF AMNHMILELLKQDSPSEAKVIGLRALLAIVMSPSSEHIGLEIFKGHDIGHYIPKVKAAIESILRSCHRIYSQALLTSSKTTIDAVTKEKSQGYLFRSVLK CIPYLIEEVGRSDRITEIIPQHGISIDPGVREEAVQVLNRIVSYLPHRRFAVMRGMANFILRLPDEFPLLIQTSLGRLLELMRFWRSCLNNDLEFQADDA KRGVQRNDGFKKSSFQQSEVIEFRASEIDAVGLIFLSSVDSQIRHTALELLRCVRALRNDIRDRTLREQLDHNLRNEVEPIFVIDVLEEHGDDIVQSCYW DTGRPFDMRRESDAIPPEVTLQSIIFETPDKNRWARCLSELVKYAADLCPSSVQDAKVEVIQRLAHITPIELGGKAHQSQDADNKLDQWLMYAMFACSCP PDSRESGGLTATKDLYHLIFLSLKSGSETNIHAATMALGHSHLEACEIMFSELSSFIDEISLETEGKPKWKVQSQKPRREELRIHIANIYRTVAENIWPG TLGHKRLFRLHYLRFIDETTRQILSAPPESFQEMQPLRYALASVLRSLAPEFVEARSEKFDLRTRKRLFDLLLSWSDDTGSTWGQDGVSDYRREVERYKA SQHSRSKDSIDKISFDKELNEQIEAIQWASMNAMASLLHGPCFDDNARKMSGRVISWINSLFNDPAPRAPFGYSPSTPSYSKYVESGRGAAGRDRQRGSH HRVSLAKLALKNLLLTNLDLFPACIDQCYYSDAAIADGYFSVLAEVYMCQEIPKCEIQRLLSLILYKVVDPNRQIRDDALQMLETLSVREWAGDGIEGSG SYRAAVVGNLPDSYQQFQYKLSCKLAKDHPELSQLLCEEIMQRQLDAVDIIAQHQVLTCMAPWIENLNFWKLKDSGWSERLLKSLYYVTWRHGDQFPDEI EKLWSTIASKPRNISPVLDFLITKGIEDCDSNASAEISGAFATYFSVAKRVSLYLARICPQRTIDHLVYQLAQRMLEDSVEPVVPSASKGEANGNFVLEF SQGPAAAQISTVVDTQPHMSPLLVRGSLDGPLRNTSGSLSWRTAGVTGRSVSGPLSPMPPELNIVPVTAGRSGQLLPALVNMSGPLMGVRSSTGSLRSRH VSRDSGDYLIDTPNSGEDGLHPGVGMHGVSAKELQSALQGHQHSLTHADIALILLAEIAYENDEDFREHLPLLFHVTFVSMDSSEDIVLEHCQNLLVNLL YSLAGRHLELYEVENNDGENKQQVVSLIKYVQSKRGSMMWENEDPTVVRSELPSAALLSALVQSMVDAIFFQGDLRETWGAEALKWAMECTARHLACRSH QIYRALRPSVTSDTCVLLLKCLHRCLGNPAPPVLGFIMEILLTLQVMVENMEPEKVILYPQLFWGCVAMMHTDFVHVYCQVLELCSRVIDRLSFEDQTTE NVLLSSMPRDELDTGGDIGDFQRIESLASPSGNLPAFEGLQPLVLKGLMSTVSHGVSIEVLSRITVHSCDSIFGDGETRLLMHITGLLPWLCLQLSKDTV TVPALPLQQQWQKACSVANNIAHWCRAKSLDGLATVFVIYAHGEIKSIDTLLACVSPLMCNEWFPKHSALAFGHLLQLLEKGPVEYQRVILLTLKSLLQH TPMDASQSPRMYAIVSQLVESSLCFEALSVLEALLQSCSSLTGSHPPEPGSYDNGADEKLLAPQTSFKARSGPLQYAMGSGFGTGHMPAAQGGAESGIPS REVALQNTRLILGRVLDNCALVRKRDFRRLVPFVTNIGNP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G15680			ARM repeat superfamily protein...		Potri.017G106100 [exp]	0	1
AT4G33210		SLOMO	SLOW MOTION, F-box family prot...		Potri.018G048700 [exp]	1.00	0.8848
AT1G69550			disease resistance protein (TI...		Potri.004G202683 [exp]	2.00	0.8687
AT5G05700		ATATE1, DLS1, A...	DELAYED LEAF SENESCENCE 1, arg...		Potri.010G190100 [exp]	4.24	0.8080
AT5G22450			unknown protein		Potri.004G203500 [exp]	7.74	0.8382
AT1G09060			Zinc finger, RING-type;Transcr...		Potri.005G027000 [exp]	8.71	0.7821
AT4G37460		SRFR1	SUPPRESSOR OF RPS4-RLD 1, Tetr...		Potri.007G052200 [exp]	9.64	0.7682
AT3G17450			hAT dimerisation domain-contai...		Potri.002G188400 [exp]	9.79	0.8270
AT1G20670			DNA-binding bromodomain-contai...		Potri.009G167500 [exp]	10.19	0.8148
AT1G79000		ATHAC1, ATHPCAT...	ARABIDOPSIS THALIANA P300/CBP ...		Potri.004G104201 [exp]	14.07	0.8038
AT1G73660			protein tyrosine kinase family...		Potri.012G048400 [exp]	16.61	0.7991

Compare expression of checked genes

Potri.017G106100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.