Plant FIBer expression Database

Potri.017G106400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G11390 510 / 2e-172 WIT1 WPP domain-interacting protein 1 (.1)
AT1G68910 353 / 1e-112 WIT2 WPP domain-interacting protein 2 (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G135900
[exp]
413 / 9e-136 AT1G68910 473 / 8e-161 WPP domain-interacting protein 2 (.1.2.3)
Potri.004G111350
[exp]
138 / 3e-38 AT5G11390 50 / 4e-08 WPP domain-interacting protein 1 (.1)
Potri.016G018700
[exp]
49 / 2e-05 AT2G32240 830 / 0.0 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034351
[exp]
576 / 0 AT5G11390 444 / 1e-146 WPP domain-interacting protein 1 (.1)
Lus10005102
[exp]
396 / 9e-132 AT5G11390 300 / 5e-95 WPP domain-interacting protein 1 (.1)
Lus10029109
[exp]
390 / 2e-127 AT1G68910 487 / 1e-166 WPP domain-interacting protein 2 (.1.2.3)
Lus10013053
[exp]
371 / 7e-120 AT1G68910 485 / 5e-166 WPP domain-interacting protein 2 (.1.2.3)
Lus10005101
[exp]
106 / 4e-26 AT5G11390 91 / 2e-21 WPP domain-interacting protein 1 (.1)
PFAM info
Representative CDS sequence
>Potri.017G106400.8 pacid=42812835 polypeptide=Potri.017G106400.8.p locus=Potri.017G106400 ID=Potri.017G106400.8.v4.1 annot-version=v4.1
ATGAACATGGATACTGATTCTGTACATGAAGCTAAAGTTTCTCTTGAAGATGTTGGAACTTGTGATCTGGACGTCGAGTCAATTAATACTGACTTAGTTG
TAGAGGCATCTTCTAATGGAGACAAGAGTAGAGAATTAGAAACTGCGGGTGGGATTCTGACAGGAGTTGAATTAGATTTGGCTTGTGTTGCAGAGAAGTT
GGTTAACTTAAGCGTGCTTATGATGCATGTTGCAACCAAGGAAACTGATTTTGAAGCCTTTGCCTCATCTAACGATATATTGGCTGATTCAGTGGAGAAG
GCTTTGGAATTTGATTTCTTGTCTGAGATTTTGGATGCTGAGACAATGGAACTGGATAAGTTAATGATGAATATACAAAAATATATTTTTGAGGTTGGAG
AAATAATATCATCAAATGGACCAGGGGAAACTTTCATGGCACTGGAAGAAAAGTTGCGTGATTCTCAAGAATCATTGAAGCAGTCAAAAGATCAAGTCTC
AGAGATTAGGGCACAATCTGCCAAGTTCCAGAGGACATTTTCATGTCTGCATGGGGAAGAAAATTGGAGTGCTGACAAGGGCTCAAACTTCTTAGAAGAC
AACCAACTGTCAAGCATGAATTCAAAGATCAACATGCAAACTGCAGAACAACAAAGGCATTTCTTGAGGATGCTGGAGAAGTCTTTGGCAAGAGAGATGG
ACCTTGAAAAGAAGCTAACCGAATCAAGACAACTAGAAGAAGAGCTAAAAGATAGAGTACTCTCTTTCCAGCAACAAGTATTCTTCATAGAGGAAGAAAC
AATGGATGTTTATGAAAAATGGTTTGAAACAGAAAATGCTGCTGAGGTTTTGATGGGGATATCAAAAGAACTACTGGGACGACTCCAAATATTCCAGTTA
AATTTGAATGGTTCTGTGAAGAGAGAAGCCGAGTTAAGATCAAAGCTTGAAAATTCTATTGAGCAGTTGGAAGCTAAAGAAATTGCTTTGCAGAAGTTCG
ATAGCAGCAGTACAAAACTCAGTCTGCTTGTAGCAAAGACTGATAGCTTAAAAGCCAGCTTGTCAGAAGCTGAAAATAATTTAGGCCTTGCTAATTCCGA
GGCCTTAACTTTGAGGGAGAAAGTGACTTCACTTGAGAACCAGCTGATAGAATCTGAATTTCAGCTGTCTGCAAAGGTCTCTGCGGATGGAACTCAGGAA
CAGCATAATGCATATTTATGTTCTGAAATCAATGAAATGAAGAATGTAACTGATACTGTGAAAGAAAAACTATCTAAAGCAGAAAGTAGGGCAGACAATG
CAGAAGCCAAGTTAAAGTTATTGGAAGAGACTAACATGAAACTTGATGAGGAGTTGGGCCATCTTAAAGACACTTCTGAGAAGGTTGATTCCTTGGAGAG
ACAGCTGAGGGAATCTGATTTTAGGCTCCAGCATGCGGTGGCATCTGCAGAAGCCAGTCAGGAGAAGCAAAATATGCTGTATGCTACAATTAGAGATATG
GAAAATTTAATTGAGGGCTTGAAGTCAAAAGTTTCAAAAGCTGAAAGCCGAGCAGACAGTGTGGAGGATAAGTGCATCATATTATCTGAAACTAATTCAG
ATCTAAATGAAGAATTGAGCTTCTTGAGGGGTCGACTTGAGTGCTTGGAGGCATCTTTGAATCAAGCCGAAGAAAAAAAAATGGCAACTGCAAAAGATAT
CTGCATTCGATCTAAAGTGATAACAGATTTGGTGATGCAGCTTGCTATCGAAAGGGAACGCCTTCATAAACAGATAGCATCACTAGCACTGCAGAACCAA
ACTCTGGTGATGAAGTTACAGCAGACAAGTAAAGATGCTGTAGACACCAAGTATCATAACAAAGGAAGTGGTGAAAAGTTTTTGTTTACTGAGCATGACG
TATCCAAATTCTCAGCTACTATTTCTGAGCTGGACAAGGCCCAGAAAAATGAACCTGTTAGTGAAACTAAGGTGGCACCAGCAGATTCCACATCTGAACT
TGAGACCGTGAGAAGAATAGATGCAGGACTCAGCTTTAAGCATGCTATCATGGCAATGCTTATATTACTCATTTCAGCAATAGTTTACGTTTTTCCACCA
CAAAAGCTACCGTTATGA
AA sequence
>Potri.017G106400.8 pacid=42812835 polypeptide=Potri.017G106400.8.p locus=Potri.017G106400 ID=Potri.017G106400.8.v4.1 annot-version=v4.1
MNMDTDSVHEAKVSLEDVGTCDLDVESINTDLVVEASSNGDKSRELETAGGILTGVELDLACVAEKLVNLSVLMMHVATKETDFEAFASSNDILADSVEK
ALEFDFLSEILDAETMELDKLMMNIQKYIFEVGEIISSNGPGETFMALEEKLRDSQESLKQSKDQVSEIRAQSAKFQRTFSCLHGEENWSADKGSNFLED
NQLSSMNSKINMQTAEQQRHFLRMLEKSLAREMDLEKKLTESRQLEEELKDRVLSFQQQVFFIEEETMDVYEKWFETENAAEVLMGISKELLGRLQIFQL
NLNGSVKREAELRSKLENSIEQLEAKEIALQKFDSSSTKLSLLVAKTDSLKASLSEAENNLGLANSEALTLREKVTSLENQLIESEFQLSAKVSADGTQE
QHNAYLCSEINEMKNVTDTVKEKLSKAESRADNAEAKLKLLEETNMKLDEELGHLKDTSEKVDSLERQLRESDFRLQHAVASAEASQEKQNMLYATIRDM
ENLIEGLKSKVSKAESRADSVEDKCIILSETNSDLNEELSFLRGRLECLEASLNQAEEKKMATAKDICIRSKVITDLVMQLAIERERLHKQIASLALQNQ
TLVMKLQQTSKDAVDTKYHNKGSGEKFLFTEHDVSKFSATISELDKAQKNEPVSETKVAPADSTSELETVRRIDAGLSFKHAIMAMLILLISAIVYVFPP
QKLPL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G11390 WIT1 WPP domain-interacting protein... Potri.017G106400
[exp]
0 1
AT3G10050 OMR1 L-O-methylthreonine resistant ... Potri.006G118400
[exp]
15.16 0.7962
AT3G30380 alpha/beta-Hydrolases superfam... Potri.017G102500
[exp]
15.58 0.7813
AT5G50080 AP2_ERF ERF110 ethylene response factor 110 ... Potri.002G065600
[exp]
22.44 0.7871
AT4G33150 LKR/SDH, SDH lysine-ketoglutarate reductase... Potri.006G134450
[exp]
23.06 0.7621
AT1G80450 VQ motif-containing protein (.... Potri.006G266600
[exp]
25.49 0.7084
AT3G20250 APUM5 pumilio 5 (.1) Potri.008G004300
[exp]
26.07 0.7708
AT3G14440 SIS7, ATNCED3, ... SALT TOLERANT 1, SUGAR INSENSI... Potri.011G112400
[exp]
31.36 0.7751
AT2G01620 MEE11 maternal effect embryo arrest ... Potri.008G133100
[exp]
33.04 0.7317
AT4G27290 S-locus lectin protein kinase ... Potri.001G411700
[exp]
34.02 0.7642
AT5G47610 RING/U-box superfamily protein... Potri.001G453800
[exp]
34.29 0.7142

Potri.017G106400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.