Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07040 224 / 4e-61 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) AT5G48620 169 / 5e-43 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G53350 167 / 2e-42 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G35450 167 / 2e-42 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G43470 166 / 5e-42 HRT, RCY1, RPP8 RECOGNITION OF PERONOSPORA PARASITICA 8, RESISTANT TO CMV\(Y\) 1, HYPERSENSITIVE RESPONSE TO TCV, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G59780 164 / 2e-41 NB-ARC domain-containing disease resistance protein (.1) AT1G58400 160 / 3e-40 Disease resistance protein (CC-NBS-LRR class) family (.1) AT3G46730 147 / 5e-36 NB-ARC domain-containing disease resistance protein (.1) AT1G58410 146 / 9e-36 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G59218 146 / 1e-35 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G216800 [exp] 283 / 8e-82 AT3G07040 573 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.003G099100 [exp] 258 / 1e-72 AT3G07040 482 / 8e-156 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134500 [exp] 256 / 5e-72 AT3G07040 422 / 1e-132 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134701 [exp] 254 / 2e-71 AT3G07040 464 / 6e-149 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134601 [exp] 250 / 8e-71 AT3G07040 443 / 2e-142 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.005G035400 [exp] 246 / 1e-68 AT3G07040 422 / 6e-133 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.003G150200 [exp] 246 / 1e-68 AT5G43470 420 / 2e-132 RECOGNITION OF PERONOSPORA PARASITICA 8, RESISTANT TO CMV\(Y\) 1, HYPERSENSITIVE RESPONSE TO TCV, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) Potri.001G134450 [exp] 245 / 3e-68 AT3G07040 488 / 1e-157 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134400 [exp] 245 / 3e-68 AT3G07040 427 / 3e-134 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014922 [exp] 259 / 4e-73 AT3G07040 523 / 1e-171 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10038983 [exp] 247 / 1e-68 AT3G07040 468 / 5e-150 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10027281 [exp] 243 / 2e-67 AT3G07040 459 / 5e-147 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10020016 [exp] 237 / 2e-65 AT3G07040 563 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10002945 [exp] 237 / 2e-65 AT3G07040 580 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10028639 [exp] 236 / 6e-65 AT3G07040 579 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10018937 [exp] 230 / 8e-63 AT3G07040 587 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10041243 [exp] 229 / 1e-62 AT3G07040 526 / 1e-172 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10014712 [exp] 187 / 1e-48 AT3G07040 492 / 3e-159 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10028075 [exp] 140 / 4e-34 AT3G07040 168 / 1e-43 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0023 [poplar] [flax] P-loop_NTPase PF13191 [poplar] [flax] AAA_16 AAA ATPase domain
Representative CDS sequence Show only first row Show all	>Potri.017G106500.1 pacid=42814546 polypeptide=Potri.017G106500.1.p locus=Potri.017G106500 ID=Potri.017G106500.1.v4.1 annot-version=v4.1 ATGGCTGAGGTAGCGGTGGAGTACCTTGTTAGAAAATTGAAGGATCGAATTTTATTTGAAACTGACAGACGAAGTGCGGCAGAATTAAATAGCATCAAGA TTGAGTTTGAAAAACTCAGGCCATTTCTGAAAAATGCAGATTGGAGAAAGATGATGGTGGCTGACAACACAATTGTGAAATGGGTGACAGATGTAATAAA CCTGGTGTATGAGATTGAAGATGTCGTTGACAAGGATTGCATTGGAAGAAAGGAGTCATATGGGTCTCTGTCCTCACTTGTTGATTTTGTGAGTGAATTT TTTAACTATGGGACCACATCAAATAAACCGCAGACTAGTTACAAGTCATTGCTGGTGCATGTCTCAGATAGGATTAAAGAACTAGAAGCCACAAGGAAGC ATCTAAGCTTGTTAGGAGACATCACTAAAGCCAAACATGAAAACCTGATACAACATTCAAAGTCCTCCCATAAGCTTCCATTGACCAATATGATTGGAAG GAGCAAAGAATTTATGATGCTCAAGGAATTGCTTCTTCATGTGGTCGAGGCTGATAGGCCATATCTTGTTGCTGTAACCGGAAATGAAGGTGTTGGCAAA ACAACACTTGTCCTAAGAGTGTATGAGAGTGTGCAGAGACATTTTGACTGTTCTGCCTGGATTTCTGTTTGTGGGCGTTCAATCACTGGAATTTTAAGAA ACATGGCTACAGATTTTTCCAGAAGCCATTCAGTAATGAAGCTGGTGAGTAATTTGGATAAAAAGGGTGACAAGGATTTAGCAAACATGATCTGTGACTA CTTAGGTGGTAAGAACTTCTTGCTAGTCTTAGATGGCTTAGATACCTTAGATACCTTTGAAGATATTAAGCGTGCATTACCCGCTAGATGCAGAGGGAAG GTGGTGGTGACAACCTGTAATTCAGCAATTCCTGCAGTTATATGCAGGCATGTTCTCCATCTTGATCCACTACTGGCAGAAGATGGTCTGAGGCTTCTTC GCGGACGAGCACTCTTGCAGCAATATGACCTTGGTGAGGTGCCTTGGCCTTCTTCAGTGAAATTGGTTGAAAAGAAGATTTTGCATATTTGTGAAGGCAT CCCCCTATCAATTGCCACTATGGGGAGCTTGCTTTCAACAATCAACCTAGAAGAAGTTGGGAATTGGAATGAGGTCCTTCATATGCTGGAGGAAGCTAAT CAGTGTATGCCTCAGTCCAATTTGATCAAGAAAGTCATCACAGTATGTTACTTTAGCCTGCCAGCAATGCTGAAATGCTGCTTCCTTTATTGTGGAATGT TTCCCCGCCATTGTGACATCCAATGTAAGAGGCTGATTCGGTTATGGGTGGCAGAGGGCTTTACAGGAAGACAGCTATTTGGGATAACAGAAGAGGAATC TGCCAAATACCTCTTAGAAGAGCTTATCCAAAGGAATTTGCTTCAAGTGGCACGTGTAGGTGTAAATGGGGAGGTGGAATCTTGTACACTCCTGCAGCCA GTGCATGATTTCATCTGTGACATGTCACAAAAGGACCAGATATTTTCTGTATATGAGAGCACCCAGCAGGTTTGGCCATTAAAGGCATCACGTTTTGTTG CCATACAAGGAGAAATTGATAATAGAACACCTAATTCCCTCCCTAGAGAGATCCGTTCTTTGCATTTCTTTGGGGGGAGGCCAAACCAGATGGCTATCTT GTTGAACTTGGTATTGAAAGTTAAACTCCTGCATGTGCTGGATTTGCAAAATATTCCTATTGACACCTTGCCTGATGAAATTGGCGATCTTGTTGAGTTG CGCTATCTAGACCTGAGGAACACGAGGCTACATGAGCTTCCACCATCCCTTCAAAATCTGTGTGAGCTACAGACACTTGATGTTAGAAACACACCGGTAA GGGCTTTGCCTAGTGGCTTTGATAGCCTCAAGATGTTGAAGCACCTTCTTCTTGCCGATTCATATGGCAACAGGGTAGTGAAGTTGGATGCTGAAATCAT GTTTCTTAAAGACCTCCAGACACTAGCAGGTGTGAAACTTACACAAAATGTCGCTGTAGGACTAAACCACCTTCCTAAACTTCTGAAGCTATCAGTGGGA GAGGTAGAAGGTGGAAAAAATTCTCTTTGTCTGTCAGAATCCATCAATCAGATGAAAGACCTCAGTTCCCTGACCATAAAATGCGCTTGGAGGAAGGAAA TTCAAATTCAGATATCAAATCCTCTTGAGAATTTGGAAAAGTTACGTGTTGGAGGTTGGATTAGAGATTTGCTGAGGTGGATAAGCAGGCTAAGCTCCCT CAAGTATTTGCATCTATGGGACTGTATGTTGAATCAAGACCCCATCTCAAGCCTCCAGCATTTGCCCAATCTTGTTGTCCTTTCATTGTCCAAGGCTTTC AAAGGGAAGCAGATAAGTTGTGATAATATTGCTGGATTTCCGAAGCTCAAGAGACTATCAATTTTTCACTTTGAAGAATTAACTGAATGGACAAAGATAG AGGAAGGATCAATGGAAAAGCTTCAGATTTTAACCATTGGTTGGTGTCGTAAACTAAAATTGCCTCCAAGAGGCCTTGAAAGTCTTAAGGATCTTGAAAC ACTGCAGATAACCAGCATGTATCCAGAATTTGCAGAAGAGGCAAAAGTGATCTCTCGTTGTTCAGGCTTAAACTTTTCAGTTGTTGAACAAGTTGCTTCT CAAACTCGTCAACAGAATCTTACCTAA
AA sequence Show only first row Show all	>Potri.017G106500.1 pacid=42814546 polypeptide=Potri.017G106500.1.p locus=Potri.017G106500 ID=Potri.017G106500.1.v4.1 annot-version=v4.1 MAEVAVEYLVRKLKDRILFETDRRSAAELNSIKIEFEKLRPFLKNADWRKMMVADNTIVKWVTDVINLVYEIEDVVDKDCIGRKESYGSLSSLVDFVSEF FNYGTTSNKPQTSYKSLLVHVSDRIKELEATRKHLSLLGDITKAKHENLIQHSKSSHKLPLTNMIGRSKEFMMLKELLLHVVEADRPYLVAVTGNEGVGK TTLVLRVYESVQRHFDCSAWISVCGRSITGILRNMATDFSRSHSVMKLVSNLDKKGDKDLANMICDYLGGKNFLLVLDGLDTLDTFEDIKRALPARCRGK VVVTTCNSAIPAVICRHVLHLDPLLAEDGLRLLRGRALLQQYDLGEVPWPSSVKLVEKKILHICEGIPLSIATMGSLLSTINLEEVGNWNEVLHMLEEAN QCMPQSNLIKKVITVCYFSLPAMLKCCFLYCGMFPRHCDIQCKRLIRLWVAEGFTGRQLFGITEEESAKYLLEELIQRNLLQVARVGVNGEVESCTLLQP VHDFICDMSQKDQIFSVYESTQQVWPLKASRFVAIQGEIDNRTPNSLPREIRSLHFFGGRPNQMAILLNLVLKVKLLHVLDLQNIPIDTLPDEIGDLVEL RYLDLRNTRLHELPPSLQNLCELQTLDVRNTPVRALPSGFDSLKMLKHLLLADSYGNRVVKLDAEIMFLKDLQTLAGVKLTQNVAVGLNHLPKLLKLSVG EVEGGKNSLCLSESINQMKDLSSLTIKCAWRKEIQIQISNPLENLEKLRVGGWIRDLLRWISRLSSLKYLHLWDCMLNQDPISSLQHLPNLVVLSLSKAF KGKQISCDNIAGFPKLKRLSIFHFEELTEWTKIEEGSMEKLQILTIGWCRKLKLPPRGLESLKDLETLQITSMYPEFAEEAKVISRCSGLNFSVVEQVAS QTRQQNLT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.017G106500 [exp]	0	1
AT1G05170			Galactosyltransferase family p...		Potri.004G013900 [exp]	2.00	0.8308
AT4G20090		EMB1025	embryo defective 1025, Pentatr...		Potri.001G075700 [exp]	2.82	0.8117
AT3G20720			unknown protein		Potri.001G417200 [exp]	5.65	0.7937
AT5G58610			PHD finger transcription facto...		Potri.002G118600 [exp]	5.74	0.7549
AT1G24430			HXXXD-type acyl-transferase fa...		Potri.017G029300 [exp]	6.32	0.8387
AT1G31360		MED34, ATRECQ2,...	ARABIDOPSIS THALIANA RECQ 2, ...		Potri.003G104300 [exp]	6.48	0.8006
AT1G55750			BSD domain (BTF2-like transcri...		Potri.007G107400 [exp]	8.30	0.7773
AT1G74960		ATKAS2, KAS2, F...	ARABIDOPSIS BETA-KETOACYL-ACP ...		Potri.006G138000 [exp]	8.60	0.7493	Pt-KAS2.2
AT4G38070	bHLH		basic helix-loop-helix (bHLH) ...		Potri.007G010500 [exp]	10.39	0.7807
AT2G16370		THY-1	thymidylate synthase 1 (.1)		Potri.009G119200 [exp]	10.67	0.7485

Compare expression of checked genes

Potri.017G106500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.