Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02380 330 / 5e-112 CO ATCOL2, COL2 CONSTANS-like 2 (.1) AT5G15840 310 / 1e-103 CO FG, CO CONSTANS, B-box type zinc finger protein with CCT domain (.1.2) AT5G15850 308 / 3e-103 CO COL1, ATCOL1 CONSTANS-like 1 (.1) AT2G24790 199 / 2e-61 CO COL3, ATCOL3 CONSTANS-like 3 (.1.2) AT5G24930 194 / 2e-58 CO COL4, ATCOL4 CONSTANS-like 4 (.1) AT5G57660 182 / 3e-54 CO COL5, ATCOL5 CONSTANS-like 5 (.1) AT1G78600 74 / 1e-14 CO BBX22, DBB3, STH3, LZF1 SALT TOLERANCE HOMOLOG 3, DOUBLE B-BOX 3, B-box domain protein 22, light-regulated zinc finger protein 1 (.1.2) AT1G75540 69 / 1e-12 CO LHUS, AtBBX21, STH2 long hypocotyl under shade, B-box domain protein 21, B BOX 21, salt tolerance homolog2 (.1) AT1G06040 67 / 2e-12 CO BBX24, STO SALT TOLERANCE, B-box domain protein 24, B-box zinc finger family protein (.1.2) AT1G73870 68 / 3e-12 CO COL7 B-box type zinc finger protein with CCT domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G108320 [exp] 516 / 0 AT3G02380 302 / 8e-101 CONSTANS-like 2 (.1) Potri.018G013800 [exp] 217 / 1e-67 AT5G24930 348 / 2e-118 CONSTANS-like 4 (.1) Potri.006G267700 [exp] 214 / 1e-66 AT5G24930 361 / 1e-123 CONSTANS-like 4 (.1) Potri.006G173600 [exp] 204 / 2e-62 AT5G57660 315 / 1e-105 CONSTANS-like 5 (.1) Potri.018G096084 [exp] 201 / 3e-61 AT5G57660 283 / 5e-93 CONSTANS-like 5 (.1) Potri.014G134601 [exp] 115 / 2e-29 AT2G47890 174 / 4e-53 B-box type zinc finger protein with CCT domain (.1.2) Potri.017G028300 [exp] 70 / 2e-13 AT2G31380 273 / 4e-93 salt tolerance homologue (.1) Potri.017G028301 [exp] 70 / 2e-13 AT1G06040 274 / 3e-93 SALT TOLERANCE, B-box domain protein 24, B-box zinc finger family protein (.1.2) Potri.007G130100 [exp] 69 / 4e-13 AT1G06040 264 / 1e-89 SALT TOLERANCE, B-box domain protein 24, B-box zinc finger family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020105 [exp] 211 / 3e-65 AT5G24930 398 / 6e-138 CONSTANS-like 4 (.1) Lus10026909 [exp] 210 / 9e-65 AT5G24930 404 / 3e-140 CONSTANS-like 4 (.1) Lus10026238 [exp] 110 / 1e-27 AT5G24930 163 / 9e-48 CONSTANS-like 4 (.1) Lus10042431 [exp] 108 / 1e-27 AT5G24930 180 / 7e-55 CONSTANS-like 4 (.1) Lus10015619 [exp] 88 / 6e-19 AT5G57660 210 / 3e-64 CONSTANS-like 5 (.1) Lus10005106 [exp] 86 / 2e-18 AT3G02380 194 / 6e-59 CONSTANS-like 2 (.1) Lus10037636 [exp] 83 / 4e-18 AT5G57660 119 / 5e-32 CONSTANS-like 5 (.1) Lus10040900 [exp] 74 / 3e-14 AT2G47890 289 / 1e-95 B-box type zinc finger protein with CCT domain (.1.2) Lus10017495 [exp] 68 / 5e-13 AT1G75540 202 / 2e-64 long hypocotyl under shade, B-box domain protein 21, B BOX 21, salt tolerance homolog2 (.1) Lus10039695 [exp] 69 / 1e-12 AT4G15250 207 / 4e-63 B-box type zinc finger protein with CCT domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00643 [poplar] [flax] zf-B_box B-box zinc finger CL0281 [poplar] [flax] CCT PF06203 [poplar] [flax] CCT CCT motif
Representative CDS sequence Show only first row Show all	>Potri.017G107500.3 pacid=42813452 polypeptide=Potri.017G107500.3.p locus=Potri.017G107500 ID=Potri.017G107500.3.v4.1 annot-version=v4.1 ATGCTGAAGGAAGAGAGCGGCGGCAGCGGCAGCGGCGGCGTCGTTAACAATTGGGCACGCGTATGTGACACGTGCCGTGCAGCAGCTTGCACTGTTTACT GCCGGGCTGATTCGGCATACCTATGTGCCGGTTGTGATGCCCGTGTGCATGCTGCAAATCGTGTCGCATCGCGCCATGAGCGCGTGCGGGTGTGCGAGGC GTGTGAGCGCGCCCCGGCTGCCTTGTTATGCAAAGCAGATGCGGCATCTCTGTGTACTGCCTGTGATGCAGATATTCACTCTGCAAACCCACTAGCACGC CGCCACCAGCGCGTCCCAATTCTGCCCATTTCCGGCTACCTTTACGGTACCCAAGTAGGGCCTGCAGCTGGTGAGACTGAAGATCAGTTCATGACGCAAG AGGGAGAAGAGACTATTGGTGAGGAGGATGAGGATGAGGCTGCTTCATGGCTGTTGCTAAATCCTGCGAAGAACAGCAACAACCAGAATAATAATGGCTT CTTGTTTGGTGGGGAGGTTGATGAGTATTTGGATATTGTTGAGTACAACTCATGTGCTGAGAATCAATATTCTGATCAGTATAATCAGCAGCACTACAGT GTTCCTCCAAAGAGTTGTGGGGGTGACAGTGTTGTGCCGATTCAGTATGGAGAAGGAAAGGATCATCAACAACAACAGCAACAACAGTATCACAATTTTC AGTTGGGATTGGAGTATGAGCCCGCTAAAGCTGCTTACAGCTACGACGGTTCAGTCAGTCAAGGTGTCTCCATGTCATCCATGGATGTTGGAGTGGTGCC AGAATCAGCAATGAGCGAGATCTCAATCTCGCACCAAAGTGCTCCAAGAGGGACAATCGACCTTTTCTCCAGCCCTCCTATCCAGATGCCATCTCAACTT AGTCCGATGGAAAGGGAGGCAAGAGTCCTAAGATACAGAGAGAAAAAGAAGGCAAGGAAGTTTGAGAAGACTATCAGGTATGCCTCTAGGAAGGCCTATG CAGAGACCAGACCCCGGATAAAAGGCCGATTTGCAAAGAGAACAGATGTAGATGTCGAAGTGGACCAGATGTTCTCGTCAACACTAATGGCAGAAACAGC ATATGGCATTGTCCCATCATTCTGA
AA sequence Show only first row Show all	>Potri.017G107500.3 pacid=42813452 polypeptide=Potri.017G107500.3.p locus=Potri.017G107500 ID=Potri.017G107500.3.v4.1 annot-version=v4.1 MLKEESGGSGSGGVVNNWARVCDTCRAAACTVYCRADSAYLCAGCDARVHAANRVASRHERVRVCEACERAPAALLCKADAASLCTACDADIHSANPLAR RHQRVPILPISGYLYGTQVGPAAGETEDQFMTQEGEETIGEEDEDEAASWLLLNPAKNSNNQNNNGFLFGGEVDEYLDIVEYNSCAENQYSDQYNQQHYS VPPKSCGGDSVVPIQYGEGKDHQQQQQQQYHNFQLGLEYEPAKAAYSYDGSVSQGVSMSSMDVGVVPESAMSEISISHQSAPRGTIDLFSSPPIQMPSQL SPMEREARVLRYREKKKARKFEKTIRYASRKAYAETRPRIKGRFAKRTDVDVEVDQMFSSTLMAETAYGIVPSF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G02380	CO	ATCOL2, COL2	CONSTANS-like 2 (.1)		Potri.017G107500 [exp]	0	1
AT3G02380	CO	ATCOL2, COL2	CONSTANS-like 2 (.1)		Potri.004G108320 [exp]	1.41	0.9465
AT5G40250			RING/U-box superfamily protein...		Potri.015G073600 [exp]	2.23	0.9071
AT4G38660			Pathogenesis-related thaumatin...		Potri.005G112600 [exp]	5.29	0.8924
AT3G09600	MYB	LCL5 (LHY-CCA1-...	REVEILLE 8, LHY-CCA1-LIKE5, Ho...		Potri.016G083900 [exp]	5.65	0.9218
AT5G12860		DIT1	dicarboxylate transporter 1 (....		Potri.009G053800 [exp]	7.54	0.9298
					Potri.010G144600 [exp]	9.16	0.8847
AT3G47500	DOF	CDF3, AtDof3,3	cycling DOF factor 3 (.1)		Potri.004G121800 [exp]	9.16	0.8759
AT5G21222			protein kinase family protein ...		Potri.018G081700 [exp]	12.96	0.9020
AT5G46240		KAT1	potassium channel in Arabidops...		Potri.004G132200 [exp]	13.85	0.8908	Pt-KAT1.1
AT3G09600	MYB	LCL5 (LHY-CCA1-...	REVEILLE 8, LHY-CCA1-LIKE5, Ho...		Potri.006G133000 [exp]	14.00	0.9037

Compare expression of checked genes

Potri.017G107500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.